Wall clock time and date at job start Mon Mar 30 2020 03:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47637 * 2 1 4 4 C 1.50698 * 109.46955 * 240.00336 * 2 1 3 5 5 H 1.07999 * 120.00275 * 240.00335 * 4 2 1 6 6 C 1.37875 * 120.00236 * 59.99810 * 4 2 1 7 7 N 1.31513 * 120.00073 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00146 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46999 * 120.00172 * 8 6 4 11 11 H 1.48498 * 109.47058 * 239.99772 * 8 6 4 12 12 N 1.46501 * 109.47271 * 120.00244 * 2 1 3 13 13 C 1.34770 * 119.99763 * 274.99778 * 12 2 1 14 14 O 1.21279 * 120.00262 * 359.97438 * 13 12 2 15 15 C 1.50708 * 119.99818 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47178 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46350 * 54.99912 * 16 15 13 18 18 C 1.53037 * 109.45250 * 174.97162 * 16 15 13 19 19 C 1.53118 * 109.27892 * 179.18844 * 18 16 15 20 20 C 1.53124 * 109.16008 * 302.34916 * 19 18 16 21 21 C 1.53036 * 109.27759 * 57.65133 * 20 19 18 22 22 N 1.46843 * 109.52504 * 300.82003 * 21 20 19 23 23 H 1.09003 * 109.47298 * 59.99553 * 1 2 3 24 24 H 1.08998 * 109.47637 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47020 * 300.00129 * 1 2 3 26 26 H 0.97001 * 120.00555 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99514 * 94.99715 * 12 2 1 28 28 H 1.09000 * 109.47077 * 59.99607 * 15 13 12 29 29 H 1.08997 * 109.47064 * 300.00372 * 15 13 12 30 30 H 1.08996 * 109.50651 * 299.13109 * 18 16 15 31 31 H 1.09001 * 109.50257 * 59.24953 * 18 16 15 32 32 H 1.08997 * 109.52579 * 182.44041 * 19 18 16 33 33 H 1.09000 * 109.52350 * 62.24885 * 19 18 16 34 34 H 1.08994 * 109.50502 * 297.71059 * 20 19 18 35 35 H 1.09004 * 109.50104 * 177.59657 * 20 19 18 36 36 H 1.09001 * 109.46076 * 180.80414 * 21 20 19 37 37 H 1.09001 * 109.46079 * 60.83975 * 21 20 19 38 38 H 1.00898 * 110.99889 * 185.83859 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1463 -2.2869 -3.6039 10 1 1.1659 -1.5865 -4.8161 11 1 3.1464 -0.1872 -4.8166 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3570 14 8 1.8591 1.1585 2.4114 15 6 2.6489 -0.7289 3.5877 16 6 2.7012 0.2543 4.7587 17 1 1.7217 0.7138 4.8911 18 6 3.0901 -0.4941 6.0356 19 6 3.1610 0.4968 7.2008 20 6 4.1692 1.5986 6.8628 21 6 3.7490 2.2863 5.5618 22 7 3.6967 1.2967 4.4782 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7087 1.1615 -3.4843 27 1 2.2490 -1.6319 1.1525 28 1 3.6480 -1.1216 3.3985 29 1 1.9760 -1.5507 3.8325 30 1 2.3428 -1.2574 6.2521 31 1 4.0634 -0.9654 5.8991 32 1 3.4799 -0.0244 8.1034 33 1 2.1782 0.9396 7.3626 34 1 5.1595 1.1603 6.7392 35 1 4.1928 2.3305 7.6703 36 1 4.4726 3.0619 5.3108 37 1 2.7645 2.7363 5.6906 38 1 3.5146 1.7413 3.5910 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694425334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:17 Heat of formation + Delta-G solvation = -84.029904 kcal Electronic energy + Delta-G solvation = -17575.215601 eV Core-core repulsion = 14836.350533 eV Total energy + Delta-G solvation = -2738.865068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89736 -39.13114 -36.69095 -34.33236 -33.62882 -32.69760 -31.01641 -28.32738 -27.33539 -24.52127 -23.61346 -22.29498 -21.05431 -20.53719 -18.81379 -17.58798 -17.18969 -16.95694 -16.58577 -16.00964 -15.33202 -15.11491 -14.89528 -14.50978 -14.40372 -13.91395 -13.76970 -13.48018 -13.16192 -13.03148 -12.86961 -12.69233 -12.57365 -12.28117 -12.11387 -11.97173 -11.62749 -11.42421 -11.24441 -11.09543 -10.66352 -10.51648 -9.74165 -9.33782 -8.17917 -6.35384 1.44166 1.45288 1.57423 1.86648 2.36417 2.68111 3.12699 3.29808 3.80665 3.92338 4.03857 4.13812 4.32608 4.41582 4.51785 4.61717 4.66703 4.74791 4.86167 4.88819 4.91158 4.98374 5.08476 5.09548 5.13828 5.25541 5.30792 5.43664 5.52187 5.62200 5.69291 5.91364 6.09943 6.21321 6.40819 6.73564 6.99834 7.33006 7.59898 8.88580 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050837 B = 0.004609 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.646790 B = 6073.046383 C = 6109.815004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.003 1.003 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.706 5.706 13 C 0.497 3.503 14 O -0.603 6.603 15 C -0.126 4.126 16 C 0.103 3.897 17 H 0.018 0.982 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.112 4.112 21 C 0.053 3.947 22 N -0.694 5.694 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.010 0.990 26 H 0.265 0.735 27 H 0.405 0.595 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.014 0.986 38 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -5.216 16.601 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.015 0.985 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.486 6.486 15 C -0.166 4.166 16 C -0.008 4.008 17 H 0.036 0.964 18 C -0.145 4.145 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.076 4.076 22 N -0.328 5.328 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.240 0.760 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.256 -4.655 16.721 18.135 hybrid contribution -0.813 0.346 -1.447 1.696 sum 4.443 -4.309 15.274 16.480 Atomic orbital electron populations 1.21885 0.98463 0.99380 0.99391 1.18315 0.90989 0.91913 0.82241 0.98524 1.21593 1.32430 1.13499 0.90847 0.90850 1.25815 0.94875 0.95578 1.02392 1.70063 1.37141 1.24020 1.24511 0.85284 0.78083 0.78531 0.78355 1.18286 1.20426 1.21020 1.46308 1.65066 1.14272 1.09793 1.21487 0.76923 0.87218 0.85875 1.90567 1.53519 1.18524 1.85982 1.21836 1.04639 0.99454 0.90694 1.21236 0.92774 0.92134 0.94644 0.96423 1.21640 1.02889 0.97741 0.92218 1.21591 0.99040 0.96797 0.98406 1.21586 0.99715 0.98225 0.95466 1.21973 0.98945 0.94118 0.92608 1.60576 1.50766 1.15580 1.05905 0.91669 0.94081 0.97088 0.92603 0.75965 0.86713 0.85865 0.89865 0.90433 0.89730 0.92923 0.91109 0.90354 0.90923 0.96800 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 14.06 2.56 44.24 0.11 14.17 16 3 H 0.00 -0.20 7.58 -2.39 -0.02 -0.21 16 4 C -0.55 -29.01 8.73 25.60 0.22 -28.79 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.15 11.32 21.45 0.24 -52.90 16 8 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 9 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.71 -29.04 5.07 -446.11 -2.26 -31.31 16 13 C 0.50 19.38 7.50 87.66 0.66 20.04 16 14 O -0.60 -28.82 13.85 -3.02 -0.04 -28.86 16 15 C -0.13 -3.36 5.38 29.85 0.16 -3.20 16 16 C 0.10 2.78 2.10 44.94 0.09 2.88 16 17 H 0.02 0.57 7.95 -2.39 -0.02 0.55 16 18 C -0.11 -2.06 5.37 30.65 0.16 -1.90 16 19 C -0.12 -2.14 6.00 30.68 0.18 -1.96 16 20 C -0.11 -2.15 6.09 30.65 0.19 -1.96 16 21 C 0.05 1.35 6.55 86.33 0.57 1.92 16 22 N -0.69 -20.90 6.50 -491.70 -3.20 -24.10 16 23 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.41 13.88 8.54 -92.71 -0.79 13.09 16 28 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.34 12.49 6.52 -89.70 -0.58 11.91 16 Total: -1.00 -65.94 302.87 -0.10 -66.04 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.33 Total: 30.72 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 3.47 Total: -3.75 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -5.22 Total: -108.31 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.04 Total: -28.86 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -65.94 -0.10 -66.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694425334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.991 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds