Wall clock time and date at job start Mon Mar 30 2020 03:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21290 * 119.99507 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00516 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47046 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.46516 * 55.00241 * 16 15 13 18 18 C 1.53041 * 109.46293 * 174.98127 * 16 15 13 19 19 C 1.53109 * 109.28055 * 179.20726 * 18 16 15 20 20 C 1.53117 * 109.15234 * 302.32779 * 19 18 16 21 21 C 1.53032 * 109.27848 * 57.66121 * 20 19 18 22 22 N 1.46848 * 109.46324 * 295.02277 * 16 15 13 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 28 28 H 1.09003 * 109.46738 * 300.00359 * 15 13 12 29 29 H 1.08994 * 109.46445 * 60.00413 * 15 13 12 30 30 H 1.09002 * 109.49917 * 299.13535 * 18 16 15 31 31 H 1.09001 * 109.50301 * 59.25074 * 18 16 15 32 32 H 1.08998 * 109.52683 * 182.42691 * 19 18 16 33 33 H 1.09001 * 109.58882 * 62.26502 * 19 18 16 34 34 H 1.09004 * 109.50452 * 297.71785 * 20 19 18 35 35 H 1.09004 * 109.50561 * 177.60288 * 20 19 18 36 36 H 1.09001 * 109.46490 * 180.80466 * 21 20 19 37 37 H 1.09000 * 109.46425 * 60.83694 * 21 20 19 38 38 H 1.00898 * 111.00161 * 54.14871 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8589 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5879 16 6 2.7009 0.2548 -4.7588 17 1 3.3030 1.1196 -4.4803 18 6 3.3272 -0.4324 -5.9743 19 6 3.3592 0.5489 -7.1492 20 6 1.9346 1.0272 -7.4431 21 6 1.3485 1.6720 -6.1852 22 7 1.3392 0.6931 -5.0906 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7006 1.1552 3.4844 27 1 2.2490 -1.6317 -1.1528 28 1 3.6480 -1.1211 -3.3987 29 1 1.9759 -1.5503 -3.8327 30 1 4.3435 -0.7438 -5.7328 31 1 2.7332 -1.3053 -6.2451 32 1 3.7650 0.0503 -8.0294 33 1 3.9851 1.4041 -6.8941 34 1 1.3188 0.1772 -7.7372 35 1 1.9557 1.7587 -8.2510 36 1 0.3290 2.0008 -6.3869 37 1 1.9569 2.5302 -5.8997 38 1 0.8705 1.0640 -4.2777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694425338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:22 Heat of formation + Delta-G solvation = -62.956883 kcal Electronic energy + Delta-G solvation = -17580.856560 eV Core-core repulsion = 14842.905286 eV Total energy + Delta-G solvation = -2737.951273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45948 -37.88788 -34.80700 -32.60104 -32.31884 -31.67853 -29.21529 -27.04923 -25.24163 -23.51019 -22.27383 -20.71161 -19.55849 -19.35026 -17.01085 -16.33163 -15.54815 -15.38602 -15.10619 -14.38932 -14.11778 -13.95725 -13.59691 -13.15310 -12.99817 -12.46709 -12.30061 -12.04878 -11.83047 -11.46027 -11.09610 -10.98033 -10.92362 -10.80233 -10.69686 -10.46512 -10.31755 -10.30801 -10.22332 -9.05441 -8.95345 -8.54390 -8.19804 -7.88303 -6.11803 -4.21281 3.25583 3.30832 3.31910 3.42691 4.10803 4.36562 4.41857 4.82842 4.89102 4.97000 5.20149 5.24771 5.29693 5.47916 5.58584 5.63186 5.70119 5.85471 5.88947 5.90486 5.96009 6.00721 6.14125 6.22037 6.42173 6.84030 6.98407 7.16555 7.28787 7.46024 7.56976 7.70110 7.73293 7.92713 8.16333 8.68643 8.78510 9.14918 9.46483 10.94050 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057273 B = 0.004635 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.766940 B = 6039.101973 C = 6328.801760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.502 3.498 14 O -0.564 6.564 15 C -0.141 4.141 16 C 0.106 3.894 17 H 0.044 0.956 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.059 3.941 22 N -0.688 5.688 23 H 0.015 0.985 24 H 0.026 0.974 25 H 0.089 0.911 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -3.081 -15.575 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.355 5.355 13 C 0.288 3.712 14 O -0.444 6.444 15 C -0.181 4.181 16 C -0.005 4.005 17 H 0.062 0.938 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.071 4.071 22 N -0.324 5.324 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.221 0.779 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.868 -2.637 -15.810 16.283 hybrid contribution 0.737 -0.160 1.422 1.610 sum 3.605 -2.796 -14.388 15.094 Atomic orbital electron populations 1.22065 0.98452 0.99086 1.00858 1.18727 0.91042 0.93931 0.80134 0.93491 1.21195 1.32417 1.13286 0.90414 0.92167 1.24887 0.94795 0.94961 0.99050 1.69892 1.35777 1.22500 1.23959 0.86510 0.79129 0.79626 0.81828 1.20198 1.21124 1.20147 1.46544 1.64767 1.13529 1.10681 1.20520 0.78362 0.87465 0.84859 1.90580 1.52227 1.16377 1.85223 1.21815 1.02960 0.99925 0.93409 1.21121 0.90306 0.96306 0.92762 0.93791 1.21648 1.00166 0.98709 0.94576 1.21554 0.97001 0.99116 0.98118 1.21597 0.96322 1.00608 0.96969 1.21835 1.00218 0.93094 0.91944 1.60459 1.17001 1.42278 1.12693 0.96637 0.95514 0.89226 0.92535 0.77902 0.89098 0.88649 0.91795 0.91183 0.92109 0.92393 0.91350 0.92128 0.91215 0.95452 0.81729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.74 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.03 11.31 55.43 0.63 -24.40 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.68 5.07 -54.93 -0.28 -14.96 16 13 C 0.50 9.81 7.50 -10.99 -0.08 9.73 16 14 O -0.56 -12.98 13.85 5.55 0.08 -12.90 16 15 C -0.14 -2.01 5.38 -27.88 -0.15 -2.16 16 16 C 0.11 1.50 2.10 -67.72 -0.14 1.35 16 17 H 0.04 0.71 7.96 -51.93 -0.41 0.30 16 18 C -0.11 -1.26 5.37 -26.65 -0.14 -1.40 16 19 C -0.12 -1.23 6.00 -26.61 -0.16 -1.39 16 20 C -0.12 -1.23 6.09 -26.65 -0.16 -1.40 16 21 C 0.06 0.75 6.55 -3.83 -0.03 0.73 16 22 N -0.69 -10.30 6.50 -106.76 -0.69 -10.99 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.39 6.97 8.54 -40.82 -0.35 6.63 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.36 6.31 6.52 -39.29 -0.26 6.05 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -29.57 302.85 -8.16 -37.73 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.34 Total: 9.45 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.09 Total: -4.14 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.35 Total: -50.35 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.57 -8.16 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694425338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.230 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds