Wall clock time and date at job start Mon Mar 30 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47491 * 2 1 4 4 C 1.50698 * 109.47693 * 240.00000 * 2 1 3 5 5 H 1.08003 * 120.00248 * 275.01180 * 4 2 1 6 6 C 1.37879 * 120.00061 * 95.00170 * 4 2 1 7 7 N 1.31514 * 120.00065 * 184.92370 * 6 4 2 8 8 Si 1.86799 * 120.00086 * 4.91820 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.83083 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.83377 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.83552 * 8 6 4 12 12 N 1.46500 * 109.46835 * 120.00006 * 2 1 3 13 13 C 1.34781 * 120.00238 * 274.99456 * 12 2 1 14 14 O 1.21281 * 119.99451 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00167 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47024 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.46206 * 304.98398 * 16 15 13 18 18 C 1.53040 * 109.46140 * 185.00276 * 16 15 13 19 19 C 1.53119 * 109.27700 * 180.80488 * 18 16 15 20 20 C 1.53119 * 109.16169 * 57.65659 * 19 18 16 21 21 C 1.53038 * 109.27616 * 302.34670 * 20 19 18 22 22 N 1.46840 * 109.52686 * 59.17737 * 21 20 19 23 23 H 1.09002 * 109.47365 * 175.03440 * 1 2 3 24 24 H 1.09001 * 109.46944 * 55.03325 * 1 2 3 25 25 H 1.08998 * 109.47309 * 295.04120 * 1 2 3 26 26 H 0.96997 * 119.99915 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99838 * 95.00168 * 12 2 1 28 28 H 1.08998 * 109.47267 * 300.01194 * 15 13 12 29 29 H 1.09009 * 109.46626 * 60.00842 * 15 13 12 30 30 H 1.08997 * 109.50598 * 300.74701 * 18 16 15 31 31 H 1.09001 * 109.50015 * 60.82833 * 18 16 15 32 32 H 1.09000 * 109.52432 * 177.56153 * 19 18 16 33 33 H 1.09000 * 109.52628 * 297.68602 * 19 18 16 34 34 H 1.08999 * 109.50018 * 62.28470 * 20 19 18 35 35 H 1.08996 * 109.50505 * 182.40122 * 20 19 18 36 36 H 1.08997 * 109.46178 * 179.19440 * 21 20 19 37 37 H 1.08997 * 109.46298 * 299.16835 * 21 20 19 38 38 H 1.00903 * 111.00439 * 174.15793 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7820 10 1 2.1061 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4449 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6487 -0.7288 3.5878 16 6 2.6998 0.2542 4.7591 17 1 3.3018 1.1193 4.4811 18 6 3.3257 -0.4333 5.9748 19 6 3.3563 0.5477 7.1501 20 6 1.9314 1.0255 7.4432 21 6 1.3460 1.6706 6.1849 22 7 1.3378 0.6920 5.0901 23 1 -0.3634 -1.0238 -0.0890 24 1 -0.3633 0.5890 -0.8422 25 1 -0.3634 0.4350 0.9310 26 1 2.9365 -0.1048 -4.2555 27 1 2.2489 -1.6318 1.1526 28 1 1.9759 -1.5507 3.8326 29 1 3.6479 -1.1214 3.3986 30 1 2.7318 -1.3064 6.2449 31 1 4.3419 -0.7448 5.7335 32 1 3.7616 0.0489 8.0304 33 1 3.9829 1.4024 6.8950 34 1 1.3156 0.1753 7.7364 35 1 1.9518 1.7567 8.2513 36 1 0.3263 1.9991 6.3861 37 1 1.9545 2.5289 5.9001 38 1 0.8696 1.0630 4.2770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694425340.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:25 Heat of formation + Delta-G solvation = -63.386823 kcal Electronic energy + Delta-G solvation = -17665.951863 eV Core-core repulsion = 14927.981946 eV Total energy + Delta-G solvation = -2737.969917 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56862 -37.99247 -34.91177 -32.65846 -32.33450 -31.75224 -29.92146 -27.24403 -25.30668 -23.56320 -22.30833 -20.60419 -19.60514 -19.53781 -17.32368 -16.39067 -15.85331 -15.55776 -15.17002 -14.34363 -14.13099 -14.05771 -13.60905 -13.19849 -13.07256 -12.54561 -12.52750 -12.31874 -12.09208 -11.78715 -11.30886 -11.11209 -10.98881 -10.84688 -10.82055 -10.59874 -10.48912 -10.36894 -9.88922 -9.20800 -9.09643 -8.70922 -8.27781 -8.06054 -6.24465 -4.28008 3.24122 3.30473 3.32937 3.40021 4.00939 4.31439 4.33436 4.77985 4.83561 4.91813 5.10125 5.22543 5.24342 5.42647 5.53412 5.57715 5.65719 5.78817 5.83937 5.85753 5.91524 5.96317 6.09266 6.17569 6.34667 6.37503 6.53093 6.68648 6.93732 7.19359 7.22584 7.37419 7.53615 7.67522 8.13387 8.57909 8.76325 8.99196 9.37866 10.87381 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044004 B = 0.005217 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.148776 B = 5365.633526 C = 5495.947287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.703 5.703 13 C 0.502 3.498 14 O -0.568 6.568 15 C -0.141 4.141 16 C 0.105 3.895 17 H 0.044 0.956 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.059 3.941 22 N -0.687 5.687 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.029 0.971 26 H 0.268 0.732 27 H 0.394 0.606 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 0.551 18.202 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.702 3.298 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.350 5.350 13 C 0.288 3.712 14 O -0.449 6.449 15 C -0.181 4.181 16 C -0.006 4.006 17 H 0.062 0.938 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.071 4.071 22 N -0.324 5.324 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.227 0.773 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.098 0.877 18.380 18.402 hybrid contribution 0.509 1.243 -0.713 1.521 sum 0.411 2.120 17.667 17.799 Atomic orbital electron populations 1.22205 0.98587 1.00546 0.99199 1.19117 0.90931 0.94293 0.82929 0.93319 1.21028 1.45181 0.95635 0.95024 0.90349 1.24944 0.93639 0.98615 0.95159 1.69883 1.44825 1.36185 1.01687 0.86880 0.79717 0.85875 0.77317 1.19955 1.21189 1.18530 1.46650 1.64551 1.13877 1.09955 1.20632 0.78124 0.87457 0.84954 1.90566 1.52508 1.16464 1.85349 1.21818 1.03191 0.99931 0.93162 1.21134 0.90266 0.96325 0.92829 0.93786 1.21647 1.00240 0.98708 0.94503 1.21557 0.96967 0.99128 0.98150 1.21595 0.96343 1.00626 0.96932 1.21833 1.00196 0.93080 0.91964 1.60455 1.17044 1.42298 1.12589 0.93437 0.93037 0.95189 0.92246 0.77302 0.88486 0.88851 0.91143 0.91718 0.92056 0.92403 0.91318 0.92111 0.91231 0.95479 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.47 37.15 0.35 -2.87 16 2 C 0.23 5.46 2.22 -69.09 -0.15 5.31 16 3 H 0.05 1.27 4.73 -51.93 -0.25 1.02 16 4 C -0.53 -14.26 9.05 -34.44 -0.31 -14.57 16 5 H 0.08 2.22 8.06 -52.48 -0.42 1.79 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 8 Si 0.88 21.68 26.99 -169.99 -4.59 17.09 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.38 6.82 56.52 0.39 -5.99 16 12 N -0.70 -13.94 5.07 -54.93 -0.28 -14.22 16 13 C 0.50 9.35 7.50 -10.98 -0.08 9.27 16 14 O -0.57 -12.37 13.85 5.56 0.08 -12.29 16 15 C -0.14 -1.93 5.38 -27.88 -0.15 -2.08 16 16 C 0.10 1.43 2.10 -67.72 -0.14 1.29 16 17 H 0.04 0.69 7.96 -51.93 -0.41 0.28 16 18 C -0.11 -1.22 5.37 -26.65 -0.14 -1.36 16 19 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 20 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 21 C 0.06 0.72 6.55 -3.84 -0.03 0.70 16 22 N -0.69 -9.80 6.50 -106.77 -0.69 -10.49 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.39 6.88 8.59 -40.82 -0.35 6.53 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.36 5.93 6.52 -39.29 -0.26 5.67 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -30.25 302.62 -7.56 -37.81 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.34 Total: 7.85 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -1.08 Total: -4.87 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.20 Total: -50.15 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.25 -7.56 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694425340.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.575 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds