Wall clock time and date at job start Mon Mar 30 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47491 * 2 1 4 4 C 1.50698 * 109.47693 * 240.00000 * 2 1 3 5 5 H 1.08003 * 120.00248 * 275.01180 * 4 2 1 6 6 C 1.37879 * 120.00061 * 95.00170 * 4 2 1 7 7 N 1.31514 * 120.00065 * 184.92370 * 6 4 2 8 8 Si 1.86799 * 120.00086 * 4.91820 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.83083 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.83377 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.83552 * 8 6 4 12 12 N 1.46500 * 109.46835 * 120.00006 * 2 1 3 13 13 C 1.34781 * 120.00238 * 274.99456 * 12 2 1 14 14 O 1.21281 * 119.99451 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00167 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47024 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.46206 * 304.98398 * 16 15 13 18 18 C 1.53040 * 109.46140 * 185.00276 * 16 15 13 19 19 C 1.53119 * 109.27700 * 180.80488 * 18 16 15 20 20 C 1.53119 * 109.16169 * 57.65659 * 19 18 16 21 21 C 1.53038 * 109.27616 * 302.34670 * 20 19 18 22 22 N 1.46840 * 109.52686 * 59.17737 * 21 20 19 23 23 H 1.09002 * 109.47365 * 175.03440 * 1 2 3 24 24 H 1.09001 * 109.46944 * 55.03325 * 1 2 3 25 25 H 1.08998 * 109.47309 * 295.04120 * 1 2 3 26 26 H 0.96997 * 119.99915 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99838 * 95.00168 * 12 2 1 28 28 H 1.08998 * 109.47267 * 300.01194 * 15 13 12 29 29 H 1.09009 * 109.46626 * 60.00842 * 15 13 12 30 30 H 1.08997 * 109.50598 * 300.74701 * 18 16 15 31 31 H 1.09001 * 109.50015 * 60.82833 * 18 16 15 32 32 H 1.09000 * 109.52432 * 177.56153 * 19 18 16 33 33 H 1.09000 * 109.52628 * 297.68602 * 19 18 16 34 34 H 1.08999 * 109.50018 * 62.28470 * 20 19 18 35 35 H 1.08996 * 109.50505 * 182.40122 * 20 19 18 36 36 H 1.08997 * 109.46178 * 179.19440 * 21 20 19 37 37 H 1.08997 * 109.46298 * 299.16835 * 21 20 19 38 38 H 1.00903 * 111.00439 * 174.15793 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7820 10 1 2.1061 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4449 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6487 -0.7288 3.5878 16 6 2.6998 0.2542 4.7591 17 1 3.3018 1.1193 4.4811 18 6 3.3257 -0.4333 5.9748 19 6 3.3563 0.5477 7.1501 20 6 1.9314 1.0255 7.4432 21 6 1.3460 1.6706 6.1849 22 7 1.3378 0.6920 5.0901 23 1 -0.3634 -1.0238 -0.0890 24 1 -0.3633 0.5890 -0.8422 25 1 -0.3634 0.4350 0.9310 26 1 2.9365 -0.1048 -4.2555 27 1 2.2489 -1.6318 1.1526 28 1 1.9759 -1.5507 3.8326 29 1 3.6479 -1.1214 3.3986 30 1 2.7318 -1.3064 6.2449 31 1 4.3419 -0.7448 5.7335 32 1 3.7616 0.0489 8.0304 33 1 3.9829 1.4024 6.8950 34 1 1.3156 0.1753 7.7364 35 1 1.9518 1.7567 8.2513 36 1 0.3263 1.9991 6.3861 37 1 1.9545 2.5289 5.9001 38 1 0.8696 1.0630 4.2770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694425340.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:25 Heat of formation + Delta-G solvation = -85.340567 kcal Electronic energy + Delta-G solvation = -17666.903849 eV Core-core repulsion = 14927.981946 eV Total energy + Delta-G solvation = -2738.921903 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94219 -39.15652 -36.69127 -34.39206 -33.68353 -32.72470 -31.59383 -28.39175 -27.33141 -24.52397 -23.53073 -22.13155 -21.17626 -20.53565 -19.20923 -17.63213 -17.48033 -16.96756 -16.50462 -15.92791 -15.39976 -15.16481 -14.93679 -14.59500 -14.39809 -14.32496 -13.90708 -13.53859 -13.33393 -13.16860 -12.97118 -12.78626 -12.58856 -12.43356 -11.97288 -11.89718 -11.63242 -11.43943 -11.24938 -11.23671 -10.86810 -10.58617 -9.79799 -9.33740 -8.40400 -6.46219 1.27067 1.31657 1.42110 1.82127 2.25184 2.50903 3.03139 3.29958 3.79994 3.90952 4.03453 4.13344 4.32280 4.39490 4.44807 4.54542 4.61619 4.67870 4.73961 4.82856 4.86937 4.89240 4.98114 5.08244 5.10774 5.13536 5.25476 5.30818 5.37599 5.45378 5.51892 5.76580 6.11664 6.20330 6.43938 6.59183 6.93702 7.20195 7.50320 8.74751 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044004 B = 0.005217 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.148776 B = 5365.633526 C = 5495.947287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.233 3.767 3 H 0.028 0.972 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.033 3.967 7 N -0.930 5.930 8 Si 0.928 3.072 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.258 1.258 12 N -0.704 5.704 13 C 0.500 3.500 14 O -0.600 6.600 15 C -0.129 4.129 16 C 0.103 3.897 17 H 0.018 0.982 18 C -0.108 4.108 19 C -0.121 4.121 20 C -0.112 4.112 21 C 0.054 3.946 22 N -0.691 5.691 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.270 0.730 27 H 0.406 0.594 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.014 0.986 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 0.282 20.337 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.129 3.871 3 H 0.046 0.954 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.569 5.569 8 Si 0.753 3.247 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.182 1.182 12 N -0.353 5.353 13 C 0.288 3.712 14 O -0.483 6.483 15 C -0.168 4.168 16 C -0.008 4.008 17 H 0.036 0.964 18 C -0.146 4.146 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.076 4.076 22 N -0.326 5.326 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.241 0.759 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.032 0.968 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.049 0.586 20.552 20.560 hybrid contribution 0.454 1.294 -1.322 1.905 sum 0.503 1.880 19.230 19.328 Atomic orbital electron populations 1.22093 0.97186 1.01162 0.99403 1.18854 0.91929 0.93043 0.83283 0.95396 1.21221 1.44222 0.94831 0.96197 0.92483 1.25597 0.93818 1.02296 0.95007 1.69976 1.46736 1.37709 1.02452 0.86046 0.79526 0.81537 0.77621 1.20148 1.20239 1.18215 1.46415 1.65018 1.14453 1.09403 1.21448 0.77008 0.87133 0.85616 1.90557 1.53647 1.18190 1.85904 1.21841 1.04720 0.99879 0.90405 1.21222 0.89776 0.95640 0.94145 0.96421 1.21636 1.00876 0.98748 0.93308 1.21588 0.96734 0.98930 0.98631 1.21583 0.96378 1.00987 0.96074 1.21962 1.00588 0.92609 0.92413 1.60563 1.17217 1.42614 1.12173 0.92454 0.93654 0.94284 0.92024 0.75884 0.86378 0.86349 0.90370 0.90195 0.89925 0.93016 0.91054 0.90444 0.90689 0.96816 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 9.47 71.98 0.68 -5.32 16 2 C 0.23 10.95 2.22 44.24 0.10 11.05 16 3 H 0.03 1.45 4.73 -2.39 -0.01 1.43 16 4 C -0.53 -28.39 9.05 25.60 0.23 -28.16 16 5 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 6 C 0.03 1.87 5.47 84.66 0.46 2.33 16 7 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 8 Si 0.93 44.86 26.99 68.60 1.85 46.71 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.26 -12.24 6.82 99.48 0.68 -11.56 16 12 N -0.70 -27.18 5.07 -446.10 -2.26 -29.44 16 13 C 0.50 18.00 7.50 87.66 0.66 18.65 16 14 O -0.60 -25.96 13.85 -3.03 -0.04 -26.01 16 15 C -0.13 -3.23 5.38 29.85 0.16 -3.06 16 16 C 0.10 2.62 2.10 44.94 0.09 2.72 16 17 H 0.02 0.55 7.96 -2.39 -0.02 0.53 16 18 C -0.11 -2.00 5.37 30.65 0.16 -1.84 16 19 C -0.12 -2.06 6.00 30.67 0.18 -1.88 16 20 C -0.11 -2.00 6.09 30.65 0.19 -1.82 16 21 C 0.05 1.25 6.55 86.33 0.57 1.82 16 22 N -0.69 -18.91 6.50 -491.70 -3.20 -22.10 16 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.41 13.64 8.59 -92.71 -0.80 12.84 16 28 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.34 11.20 6.52 -89.69 -0.58 10.62 16 Total: -1.00 -64.97 302.62 -0.23 -65.20 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -0.37 Total: 26.26 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 3.49 Total: -5.50 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -5.16 Total: -106.66 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.04 Total: -26.01 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.85 Total: 46.71 kcal Total: -64.97 -0.23 -65.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694425340.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.143 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds