Wall clock time and date at job start Mon Mar 30 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47279 * 2 1 4 4 C 1.46766 * 124.35230 * 270.00440 * 3 2 1 5 5 C 1.54474 * 105.47590 * 196.99210 * 4 3 2 6 6 C 1.54629 * 101.76280 * 334.58127 * 5 4 3 7 7 H 1.09007 * 110.48917 * 143.47555 * 6 5 4 8 8 N 1.46895 * 110.48880 * 266.11730 * 6 5 4 9 9 C 1.46901 * 110.99937 * 63.74140 * 8 6 5 10 10 C 1.46901 * 111.00371 * 187.69409 * 8 6 5 11 11 H 1.08991 * 109.47201 * 299.95859 * 10 8 6 12 12 C 1.52997 * 109.47025 * 179.97438 * 10 8 6 13 13 C 1.50704 * 109.46703 * 59.95524 * 10 8 6 14 14 H 1.07996 * 120.00343 * 4.99252 * 13 10 8 15 15 C 1.37878 * 119.99844 * 184.98815 * 13 10 8 16 16 N 1.31511 * 119.99906 * 194.88384 * 15 13 10 17 17 Si 1.86798 * 119.99839 * 14.88445 * 15 13 10 18 18 H 1.48504 * 109.47239 * 95.35417 * 17 15 13 19 19 H 1.48507 * 109.47121 * 215.35139 * 17 15 13 20 20 H 1.48501 * 109.47416 * 335.35067 * 17 15 13 21 21 C 1.34417 * 124.35012 * 89.97410 * 3 2 1 22 22 O 1.21285 * 124.93838 * 359.34701 * 21 3 2 23 23 H 1.08992 * 109.47144 * 299.99535 * 1 2 3 24 24 H 1.08997 * 109.46731 * 59.99960 * 1 2 3 25 25 H 1.09000 * 109.46775 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47231 * 239.99924 * 2 1 3 27 27 H 1.09001 * 109.47193 * 120.00169 * 2 1 3 28 28 H 1.09002 * 110.24243 * 315.98902 * 4 3 2 29 29 H 1.08999 * 110.24649 * 77.89864 * 4 3 2 30 30 H 1.09003 * 110.97316 * 92.69689 * 5 4 3 31 31 H 1.08995 * 110.97125 * 216.46005 * 5 4 3 32 32 H 1.09003 * 109.46798 * 60.00114 * 9 8 6 33 33 H 1.08998 * 109.47246 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47078 * 300.00417 * 9 8 6 35 35 H 1.09004 * 109.47234 * 66.59790 * 12 10 8 36 36 H 1.08999 * 109.46894 * 186.59561 * 12 10 8 37 37 H 1.09002 * 109.47348 * 306.58986 * 12 10 8 38 38 H 0.97005 * 119.99573 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1739 3.3444 -0.7486 6 6 2.7686 3.4756 0.7378 7 1 3.6316 3.7465 1.3462 8 7 1.6969 4.4683 0.8928 9 6 0.4761 4.0377 0.1984 10 6 1.4285 4.7361 2.3121 11 1 1.1229 3.8130 2.8045 12 6 0.3097 5.7726 2.4327 13 6 2.6776 5.2657 2.9682 14 1 3.5562 5.4671 2.3734 15 6 2.6986 5.4933 4.3279 16 7 3.6595 6.2175 4.8586 17 14 1.3621 4.7729 5.4161 18 1 1.8311 3.4860 5.9900 19 1 1.0540 5.7222 6.5159 20 1 0.1387 4.5379 4.6079 21 6 2.2707 2.0964 1.1098 22 8 2.1166 1.6960 2.2442 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.8327 1.5533 -1.9381 29 1 1.3636 2.5291 -1.6440 30 1 4.2328 3.1040 -0.8444 31 1 2.9301 4.2518 -1.3010 32 1 0.1368 3.0891 0.6145 33 1 -0.3009 4.7909 0.3288 34 1 0.6869 3.9138 -0.8639 35 1 -0.6228 5.3453 2.0640 36 1 0.1903 6.0583 3.4778 37 1 0.5646 6.6528 1.8424 38 1 3.6740 6.3779 5.8152 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696581124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:58 Heat of formation + Delta-G solvation = -12.992304 kcal Electronic energy + Delta-G solvation = -18805.951888 eV Core-core repulsion = 16070.167241 eV Total energy + Delta-G solvation = -2735.784647 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53957 -36.62623 -35.98434 -33.44620 -32.13544 -29.84188 -28.64715 -27.60978 -25.18758 -23.99977 -23.28175 -20.95788 -19.81991 -18.62357 -16.91282 -16.62622 -16.31657 -15.13521 -14.72349 -14.21343 -13.91695 -13.74020 -13.37575 -13.06058 -12.79872 -12.48398 -12.40638 -12.31189 -12.21195 -11.82214 -11.61463 -11.45124 -11.06871 -10.77243 -10.67607 -10.43501 -10.22838 -10.17599 -9.60924 -9.44125 -9.04119 -8.48202 -8.37156 -7.36738 -6.01416 -3.94490 3.04861 3.24823 3.38891 3.47370 3.54529 4.53091 4.60642 4.79153 4.82867 5.07708 5.19742 5.29941 5.33867 5.36032 5.39341 5.51463 5.67881 5.75312 5.87877 5.94521 6.03022 6.16354 6.20528 6.27121 6.45303 6.49097 6.64840 6.73723 6.83905 6.98148 7.31347 7.41638 7.68917 7.88349 8.00481 8.63350 8.69754 9.05851 9.65271 11.11204 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028651 B = 0.008783 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.034025 B = 3187.073215 C = 3389.258379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.628 5.628 4 C 0.101 3.899 5 C -0.129 4.129 6 C 0.063 3.937 7 H 0.131 0.869 8 N -0.496 5.496 9 C 0.009 3.991 10 C 0.177 3.823 11 H 0.011 0.989 12 C -0.138 4.138 13 C -0.506 4.506 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.893 5.893 17 Si 0.865 3.135 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.259 1.259 21 C 0.492 3.508 22 O -0.518 6.518 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.016 0.984 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 -9.175 -13.953 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.000 4.000 3 N -0.366 5.366 4 C -0.022 4.022 5 C -0.167 4.167 6 C -0.050 4.050 7 H 0.148 0.852 8 N -0.221 5.221 9 C -0.140 4.140 10 C 0.070 3.930 11 H 0.029 0.971 12 C -0.196 4.196 13 C -0.544 4.544 14 H 0.098 0.902 15 C -0.124 4.124 16 N -0.531 5.531 17 Si 0.692 3.308 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.183 1.183 21 C 0.278 3.722 22 O -0.391 6.391 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.769 -8.934 -13.352 16.758 hybrid contribution -1.054 -1.219 1.032 1.914 sum -5.823 -10.153 -12.320 16.993 Atomic orbital electron populations 1.22156 0.96280 1.01805 1.02407 1.21238 0.94082 0.82165 1.02490 1.48525 1.66972 1.13321 1.07743 1.22189 0.99446 0.93212 0.87319 1.22700 0.99544 0.98200 0.96294 1.22587 0.98777 0.86912 0.96684 0.85175 1.62386 1.05463 1.37921 1.16293 1.22665 0.93992 0.98703 0.98612 1.19773 0.96015 0.94179 0.83031 0.97134 1.22184 0.96276 1.00232 1.00865 1.20792 0.97768 1.43194 0.92630 0.90219 1.24805 0.95612 0.94083 0.97909 1.69961 1.34255 1.36792 1.12121 0.87154 0.83653 0.79448 0.80521 1.20626 1.21572 1.18313 1.22308 0.76948 0.88687 0.84276 1.90703 1.52206 1.74941 1.21216 0.92306 0.92600 0.91872 0.90928 0.90457 0.91178 0.91356 0.89975 0.88384 0.96567 0.91267 0.91941 0.96054 0.93103 0.92562 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.24 37.16 0.38 -1.55 16 2 C 0.12 1.51 6.65 -4.04 -0.03 1.49 16 3 N -0.63 -9.33 2.72 -172.42 -0.47 -9.79 16 4 C 0.10 1.17 6.46 -3.12 -0.02 1.15 16 5 C -0.13 -1.72 6.28 -25.10 -0.16 -1.88 16 6 C 0.06 1.20 2.93 -67.73 -0.20 1.00 16 7 H 0.13 2.89 6.39 -51.92 -0.33 2.55 16 8 N -0.50 -10.21 4.59 -228.31 -1.05 -11.25 16 9 C 0.01 0.15 7.97 60.07 0.48 0.63 16 10 C 0.18 4.37 1.45 -68.86 -0.10 4.27 16 11 H 0.01 0.30 5.36 -51.93 -0.28 0.02 16 12 C -0.14 -3.13 7.86 37.16 0.29 -2.84 16 13 C -0.51 -14.43 8.11 -34.44 -0.28 -14.71 16 14 H 0.08 2.42 7.23 -52.49 -0.38 2.04 16 15 C 0.08 2.32 5.33 -17.82 -0.09 2.22 16 16 N -0.89 -27.72 13.96 55.43 0.77 -26.95 16 17 Si 0.86 22.89 25.75 -169.99 -4.38 18.51 16 18 H -0.28 -7.62 7.11 56.52 0.40 -7.21 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.26 -6.58 5.52 56.52 0.31 -6.27 16 21 C 0.49 9.75 5.54 -10.86 -0.06 9.69 16 22 O -0.52 -12.71 16.52 5.55 0.09 -12.62 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.07 7.93 -51.93 -0.41 0.65 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.73 6.18 -51.93 -0.32 0.40 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.22 7.99 -51.93 -0.42 0.81 16 32 H 0.02 0.29 6.81 -51.93 -0.35 -0.06 16 33 H 0.07 1.15 6.16 -51.93 -0.32 0.83 16 34 H 0.06 0.87 5.22 -51.93 -0.27 0.59 16 35 H 0.02 0.42 6.65 -51.93 -0.35 0.07 16 36 H 0.05 1.21 5.06 -51.93 -0.26 0.94 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 288.36 15.07 4.35 4.35 Total: -1.00 -33.74 288.36 -6.34 -40.08 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.87 Total: -1.79 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 0.21 Total: -0.54 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.74 Total: -47.99 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.38 Total: 18.51 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.74 -6.34 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.088 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds