Wall clock time and date at job start Mon Mar 30 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47279 * 2 1 4 4 C 1.46766 * 124.35230 * 270.00440 * 3 2 1 5 5 C 1.54474 * 105.47590 * 196.99210 * 4 3 2 6 6 C 1.54629 * 101.76280 * 334.58127 * 5 4 3 7 7 H 1.09007 * 110.48917 * 143.47555 * 6 5 4 8 8 N 1.46895 * 110.48880 * 266.11730 * 6 5 4 9 9 C 1.46901 * 110.99937 * 63.74140 * 8 6 5 10 10 C 1.46901 * 111.00371 * 187.69409 * 8 6 5 11 11 H 1.08991 * 109.47201 * 299.95859 * 10 8 6 12 12 C 1.52997 * 109.47025 * 179.97438 * 10 8 6 13 13 C 1.50704 * 109.46703 * 59.95524 * 10 8 6 14 14 H 1.07996 * 120.00343 * 4.99252 * 13 10 8 15 15 C 1.37878 * 119.99844 * 184.98815 * 13 10 8 16 16 N 1.31511 * 119.99906 * 194.88384 * 15 13 10 17 17 Si 1.86798 * 119.99839 * 14.88445 * 15 13 10 18 18 H 1.48504 * 109.47239 * 95.35417 * 17 15 13 19 19 H 1.48507 * 109.47121 * 215.35139 * 17 15 13 20 20 H 1.48501 * 109.47416 * 335.35067 * 17 15 13 21 21 C 1.34417 * 124.35012 * 89.97410 * 3 2 1 22 22 O 1.21285 * 124.93838 * 359.34701 * 21 3 2 23 23 H 1.08992 * 109.47144 * 299.99535 * 1 2 3 24 24 H 1.08997 * 109.46731 * 59.99960 * 1 2 3 25 25 H 1.09000 * 109.46775 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47231 * 239.99924 * 2 1 3 27 27 H 1.09001 * 109.47193 * 120.00169 * 2 1 3 28 28 H 1.09002 * 110.24243 * 315.98902 * 4 3 2 29 29 H 1.08999 * 110.24649 * 77.89864 * 4 3 2 30 30 H 1.09003 * 110.97316 * 92.69689 * 5 4 3 31 31 H 1.08995 * 110.97125 * 216.46005 * 5 4 3 32 32 H 1.09003 * 109.46798 * 60.00114 * 9 8 6 33 33 H 1.08998 * 109.47246 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47078 * 300.00417 * 9 8 6 35 35 H 1.09004 * 109.47234 * 66.59790 * 12 10 8 36 36 H 1.08999 * 109.46894 * 186.59561 * 12 10 8 37 37 H 1.09002 * 109.47348 * 306.58986 * 12 10 8 38 38 H 0.97005 * 119.99573 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1739 3.3444 -0.7486 6 6 2.7686 3.4756 0.7378 7 1 3.6316 3.7465 1.3462 8 7 1.6969 4.4683 0.8928 9 6 0.4761 4.0377 0.1984 10 6 1.4285 4.7361 2.3121 11 1 1.1229 3.8130 2.8045 12 6 0.3097 5.7726 2.4327 13 6 2.6776 5.2657 2.9682 14 1 3.5562 5.4671 2.3734 15 6 2.6986 5.4933 4.3279 16 7 3.6595 6.2175 4.8586 17 14 1.3621 4.7729 5.4161 18 1 1.8311 3.4860 5.9900 19 1 1.0540 5.7222 6.5159 20 1 0.1387 4.5379 4.6079 21 6 2.2707 2.0964 1.1098 22 8 2.1166 1.6960 2.2442 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.8327 1.5533 -1.9381 29 1 1.3636 2.5291 -1.6440 30 1 4.2328 3.1040 -0.8444 31 1 2.9301 4.2518 -1.3010 32 1 0.1368 3.0891 0.6145 33 1 -0.3009 4.7909 0.3288 34 1 0.6869 3.9138 -0.8639 35 1 -0.6228 5.3453 2.0640 36 1 0.1903 6.0583 3.4778 37 1 0.5646 6.6528 1.8424 38 1 3.6740 6.3779 5.8152 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696581124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:58 Heat of formation + Delta-G solvation = -39.067820 kcal Electronic energy + Delta-G solvation = -18807.082607 eV Core-core repulsion = 16070.167241 eV Total energy + Delta-G solvation = -2736.915366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92779 -38.27440 -37.43460 -35.03387 -33.92625 -31.47819 -29.95489 -29.00173 -26.96740 -25.66345 -24.38946 -22.28499 -21.51167 -20.09995 -18.93065 -18.09216 -17.66536 -16.63667 -16.48607 -15.64529 -15.55844 -15.14424 -14.70342 -14.53289 -14.47683 -14.24982 -13.79643 -13.76525 -13.51183 -13.22655 -12.89960 -12.73765 -12.70202 -12.40212 -12.25041 -12.06617 -11.98134 -11.67422 -11.45953 -11.15924 -11.09063 -10.65694 -9.66029 -9.03578 -8.32370 -6.26740 1.22775 1.31159 1.39364 1.54027 2.09216 2.30884 3.02212 3.14340 3.55878 3.69057 4.09276 4.14577 4.22260 4.30851 4.37498 4.46601 4.50493 4.62553 4.66930 4.73179 4.74925 4.80911 4.90571 4.93814 4.98761 5.10732 5.19001 5.22677 5.26317 5.45409 5.68614 5.71945 5.95560 6.12136 6.24478 6.59939 6.75378 7.22140 7.35341 8.84070 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028651 B = 0.008783 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.034025 B = 3187.073215 C = 3389.258379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.615 5.615 4 C 0.101 3.899 5 C -0.116 4.116 6 C 0.051 3.949 7 H 0.083 0.917 8 N -0.501 5.501 9 C 0.012 3.988 10 C 0.181 3.819 11 H -0.017 1.017 12 C -0.133 4.133 13 C -0.500 4.500 14 H 0.047 0.953 15 C 0.026 3.974 16 N -0.936 5.936 17 Si 0.917 3.083 18 H -0.295 1.295 19 H -0.275 1.275 20 H -0.243 1.243 21 C 0.482 3.518 22 O -0.583 6.583 23 H 0.019 0.981 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.003 0.997 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 -10.273 -17.364 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.006 4.006 3 N -0.350 5.350 4 C -0.021 4.021 5 C -0.154 4.154 6 C -0.062 4.062 7 H 0.101 0.899 8 N -0.225 5.225 9 C -0.136 4.136 10 C 0.073 3.927 11 H 0.000 1.000 12 C -0.191 4.191 13 C -0.538 4.538 14 H 0.065 0.935 15 C -0.172 4.172 16 N -0.577 5.577 17 Si 0.743 3.257 18 H -0.223 1.223 19 H -0.201 1.201 20 H -0.166 1.166 21 C 0.269 3.731 22 O -0.461 6.461 23 H 0.039 0.961 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.137 0.863 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.021 0.979 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.493 -10.041 -16.850 20.662 hybrid contribution -0.442 -0.941 1.955 2.215 sum -6.935 -10.982 -14.895 19.763 Atomic orbital electron populations 1.22099 0.95375 1.03127 1.01320 1.21523 0.94803 0.80683 1.03577 1.48601 1.64867 1.14129 1.07396 1.22509 1.00604 0.92608 0.86331 1.22722 1.01064 1.00036 0.91587 1.22597 0.96828 0.86538 1.00219 0.89924 1.62333 1.07340 1.39232 1.13608 1.22768 0.92457 0.98096 1.00274 1.19543 0.94526 0.93169 0.85435 0.99987 1.22067 0.96831 0.99855 1.00326 1.21059 0.98450 1.41715 0.92560 0.93455 1.25488 0.97752 0.94632 0.99344 1.70060 1.36361 1.38716 1.12526 0.86317 0.82011 0.78055 0.79345 1.22270 1.20084 1.16617 1.22387 0.76896 0.89356 0.84486 1.90654 1.55271 1.76238 1.23960 0.96134 0.90747 0.89469 0.86348 0.92814 0.86761 0.89149 0.88433 0.86775 0.97859 0.90580 0.87865 0.93009 0.94490 0.91951 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 71.98 0.74 -2.51 16 2 C 0.12 2.52 6.65 86.38 0.57 3.09 16 3 N -0.62 -16.69 2.72 -817.99 -2.22 -18.91 16 4 C 0.10 1.81 6.46 86.83 0.56 2.37 16 5 C -0.12 -2.73 6.28 31.65 0.20 -2.54 16 6 C 0.05 1.95 2.93 44.91 0.13 2.08 16 7 H 0.08 3.92 6.39 -2.38 -0.02 3.90 16 8 N -0.50 -20.30 4.59 -876.24 -4.02 -24.32 16 9 C 0.01 0.36 7.97 127.69 1.02 1.38 16 10 C 0.18 9.08 1.45 44.17 0.06 9.14 16 11 H -0.02 -0.97 5.36 -2.39 -0.01 -0.99 16 12 C -0.13 -5.91 7.86 71.98 0.57 -5.35 16 13 C -0.50 -29.73 8.11 25.60 0.21 -29.52 16 14 H 0.05 3.05 7.23 -2.91 -0.02 3.03 16 15 C 0.03 1.59 5.33 84.66 0.45 2.04 16 16 N -0.94 -60.40 13.96 21.45 0.30 -60.10 16 17 Si 0.92 48.72 25.75 68.60 1.77 50.48 16 18 H -0.30 -16.32 7.11 99.48 0.71 -15.61 16 19 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.24 -12.14 5.52 99.48 0.55 -11.60 16 21 C 0.48 19.25 5.54 87.90 0.49 19.74 16 22 O -0.58 -30.02 16.52 -3.05 -0.05 -30.07 16 23 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.05 1.44 7.93 -2.39 -0.02 1.42 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.32 6.18 -2.39 -0.01 1.30 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 2.37 7.99 -2.39 -0.02 2.35 16 32 H 0.00 0.10 6.81 -2.39 -0.02 0.08 16 33 H 0.08 2.28 6.16 -2.39 -0.01 2.26 16 34 H 0.10 2.36 5.22 -2.39 -0.01 2.34 16 35 H 0.05 1.96 6.65 -2.38 -0.02 1.94 16 36 H 0.04 1.72 5.06 -2.39 -0.01 1.70 16 37 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -79.92 288.36 1.65 -78.27 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 0.88 Total: 4.73 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 5.00 Total: -0.08 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -5.94 Total: -103.33 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.05 Total: -30.07 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.77 Total: 50.48 kcal Total: -79.92 1.65 -78.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.197 kcal (2) G-P(sol) polarization free energy of solvation -79.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds