Wall clock time and date at job start Mon Mar 30 2020 03:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.46862 * 2 1 4 4 C 1.46757 * 124.34789 * 269.72703 * 3 2 1 5 5 C 1.54664 * 105.38030 * 162.85426 * 4 3 2 6 6 C 1.54626 * 101.68379 * 25.76685 * 5 4 3 7 7 H 1.08994 * 110.48789 * 216.31100 * 6 5 4 8 8 N 1.46904 * 110.59877 * 93.71865 * 6 5 4 9 9 C 1.46900 * 111.00023 * 300.93852 * 8 6 5 10 10 C 1.46906 * 110.99680 * 176.98267 * 8 6 5 11 11 H 1.09001 * 109.47128 * 64.09991 * 10 8 6 12 12 C 1.53002 * 109.46868 * 184.09554 * 10 8 6 13 13 C 1.50698 * 109.47126 * 304.09524 * 10 8 6 14 14 H 1.07995 * 120.00380 * 0.02562 * 13 10 8 15 15 C 1.37879 * 119.99565 * 179.97438 * 13 10 8 16 16 N 1.31510 * 120.00359 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99744 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47139 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46875 * 120.00398 * 17 15 13 20 20 H 1.48502 * 109.47126 * 240.00336 * 17 15 13 21 21 C 1.34419 * 124.34523 * 90.02712 * 3 2 1 22 22 O 1.21274 * 124.94675 * 0.42742 * 21 3 2 23 23 H 1.08994 * 109.47081 * 60.00321 * 1 2 3 24 24 H 1.09005 * 109.46741 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46930 * 299.99370 * 1 2 3 26 26 H 1.08994 * 109.47350 * 120.00158 * 2 1 3 27 27 H 1.08998 * 109.47172 * 240.00167 * 2 1 3 28 28 H 1.09003 * 110.24917 * 281.98284 * 4 3 2 29 29 H 1.08994 * 110.24934 * 43.98330 * 4 3 2 30 30 H 1.08996 * 111.19089 * 267.59518 * 5 4 3 31 31 H 1.09000 * 110.85308 * 143.79030 * 5 4 3 32 32 H 1.08990 * 109.47055 * 60.00163 * 9 8 6 33 33 H 1.09004 * 109.46573 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47165 * 299.99521 * 9 8 6 35 35 H 1.09000 * 109.47149 * 304.13500 * 12 10 8 36 36 H 1.08999 * 109.46878 * 64.13432 * 12 10 8 37 37 H 1.08996 * 109.46977 * 184.12992 * 12 10 8 38 38 H 0.97000 * 119.99844 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2997 2.1601 -1.2117 5 6 2.3524 3.6348 -0.7484 6 6 2.7506 3.4821 0.7379 7 1 2.2495 4.2349 1.3463 8 7 4.2077 3.5819 0.8954 9 6 4.8942 2.5467 0.1113 10 6 4.5902 3.5097 2.3120 11 1 4.3228 2.5312 2.7111 12 6 6.1001 3.7189 2.4439 13 6 3.8651 4.5821 3.0834 14 1 3.1876 5.2503 2.5727 15 6 4.0659 4.7096 4.4415 16 7 4.8905 3.8956 5.0636 17 14 3.1666 6.0385 5.3979 18 1 2.3033 6.8158 4.4729 19 1 2.3258 5.4095 6.4481 20 1 4.1554 6.9462 6.0333 21 6 2.2716 2.0962 1.1098 22 8 2.1361 1.6892 2.2442 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.2574 1.8614 -1.6382 29 1 1.5019 2.0235 -1.9416 30 1 1.3775 4.1128 -0.8440 31 1 3.1119 4.1881 -1.3009 32 1 4.6477 2.6668 -0.9436 33 1 5.9716 2.6438 0.2457 34 1 4.5728 1.5616 0.4497 35 1 6.6234 2.9883 1.8271 36 1 6.3577 4.7250 2.1129 37 1 6.3947 3.5926 3.4856 38 1 5.0320 3.9856 6.0190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696581159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:01 Heat of formation + Delta-G solvation = -15.370986 kcal Electronic energy + Delta-G solvation = -18690.274153 eV Core-core repulsion = 15954.386358 eV Total energy + Delta-G solvation = -2735.887794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40337 -36.43946 -35.83968 -33.38433 -32.01017 -29.33283 -28.28697 -27.54956 -25.08033 -23.87973 -23.23618 -20.87060 -19.80238 -18.55041 -16.74870 -16.50915 -15.82312 -14.98211 -14.75744 -14.06768 -13.88194 -13.64513 -13.22459 -13.08995 -12.66171 -12.45499 -12.25077 -12.02387 -11.80922 -11.71622 -11.44419 -11.01988 -10.91806 -10.71768 -10.56845 -10.45389 -10.13218 -9.97723 -9.73062 -9.41673 -8.75916 -8.36692 -8.29282 -7.18142 -5.89364 -3.92250 3.21357 3.35751 3.38093 3.45058 3.48445 4.50159 4.75867 4.85663 4.95823 5.14351 5.28930 5.38309 5.41401 5.45891 5.49746 5.57456 5.75968 5.88077 5.95792 6.06330 6.09947 6.21102 6.26250 6.40292 6.56218 6.89364 6.94867 7.12430 7.13842 7.50341 7.61917 7.70095 7.89438 8.16853 8.35502 8.60215 8.82296 9.09896 9.70974 11.18728 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.008229 C = 0.007479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.949914 B = 3401.989884 C = 3743.140376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.122 3.878 3 N -0.631 5.631 4 C 0.102 3.898 5 C -0.131 4.131 6 C 0.065 3.935 7 H 0.124 0.876 8 N -0.507 5.507 9 C 0.012 3.988 10 C 0.205 3.795 11 H 0.015 0.985 12 C -0.131 4.131 13 C -0.498 4.498 14 H 0.061 0.939 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.490 3.510 22 O -0.507 6.507 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.014 0.986 35 H 0.008 0.992 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -4.573 -13.891 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.369 5.369 4 C -0.021 4.021 5 C -0.170 4.170 6 C -0.048 4.048 7 H 0.141 0.859 8 N -0.232 5.232 9 C -0.137 4.137 10 C 0.099 3.901 11 H 0.033 0.967 12 C -0.189 4.189 13 C -0.537 4.537 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.211 1.211 21 C 0.276 3.724 22 O -0.379 6.379 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.032 0.968 35 H 0.027 0.973 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.899 -4.440 -13.228 14.788 hybrid contribution -0.711 -0.262 0.821 1.117 sum -5.610 -4.702 -12.407 14.406 Atomic orbital electron populations 1.22141 0.96281 1.01731 1.02329 1.21200 0.93993 0.82383 1.02426 1.48540 1.67194 1.13426 1.07706 1.22189 1.00610 0.91835 0.87473 1.22743 1.02691 0.94876 0.96656 1.22544 0.92117 0.94150 0.95972 0.85875 1.62555 1.01642 1.44642 1.14402 1.22619 1.00292 0.93117 0.97661 1.19401 0.93054 0.97258 0.80354 0.96707 1.21854 0.96782 0.97895 1.02353 1.21037 1.25108 1.15184 0.92327 0.92101 1.24873 0.95348 0.96132 0.97604 1.69904 1.36291 1.37561 1.09300 0.86498 0.79556 0.81651 0.80010 1.19792 1.21208 1.21150 1.22295 0.76273 0.89545 0.84292 1.90733 1.50653 1.75482 1.21009 0.92713 0.91951 0.92214 0.90514 0.91130 0.91344 0.91414 0.90229 0.88621 0.92342 0.91272 0.96757 0.97333 0.94585 0.89798 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.12 1.62 6.65 -4.04 -0.03 1.60 16 3 N -0.63 -9.92 2.68 -172.30 -0.46 -10.38 16 4 C 0.10 1.25 6.47 -3.03 -0.02 1.23 16 5 C -0.13 -1.80 6.25 -25.00 -0.16 -1.95 16 6 C 0.06 1.27 2.89 -67.72 -0.20 1.08 16 7 H 0.12 2.71 6.12 -51.93 -0.32 2.39 16 8 N -0.51 -10.89 4.62 -228.30 -1.06 -11.94 16 9 C 0.01 0.21 7.88 60.06 0.47 0.69 16 10 C 0.20 5.38 1.75 -68.86 -0.12 5.26 16 11 H 0.02 0.46 6.76 -51.93 -0.35 0.11 16 12 C -0.13 -3.29 8.80 37.16 0.33 -2.96 16 13 C -0.50 -14.10 7.87 -34.44 -0.27 -14.37 16 14 H 0.06 1.69 6.43 -52.49 -0.34 1.35 16 15 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -26.72 11.36 55.43 0.63 -26.09 16 17 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.49 10.18 5.65 -10.86 -0.06 10.12 16 22 O -0.51 -13.12 16.45 5.56 0.09 -13.03 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.17 7.92 -51.93 -0.41 0.75 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.78 6.16 -51.93 -0.32 0.46 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.22 7.74 -51.93 -0.40 0.81 16 32 H 0.06 0.86 5.19 -51.93 -0.27 0.59 16 33 H 0.07 1.26 6.02 -51.93 -0.31 0.94 16 34 H 0.01 0.27 6.86 -51.93 -0.36 -0.08 16 35 H 0.01 0.18 6.11 -51.93 -0.32 -0.14 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 2.32 6.19 -51.93 -0.32 2.00 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -33.09 292.52 -6.98 -40.08 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.81 Total: -1.09 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 0.24 Total: 0.80 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.89 Total: -48.41 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.09 -6.98 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.705 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds