Wall clock time and date at job start Mon Mar 30 2020 03:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.46862 * 2 1 4 4 C 1.46757 * 124.34789 * 269.72703 * 3 2 1 5 5 C 1.54664 * 105.38030 * 162.85426 * 4 3 2 6 6 C 1.54626 * 101.68379 * 25.76685 * 5 4 3 7 7 H 1.08994 * 110.48789 * 216.31100 * 6 5 4 8 8 N 1.46904 * 110.59877 * 93.71865 * 6 5 4 9 9 C 1.46900 * 111.00023 * 300.93852 * 8 6 5 10 10 C 1.46906 * 110.99680 * 176.98267 * 8 6 5 11 11 H 1.09001 * 109.47128 * 64.09991 * 10 8 6 12 12 C 1.53002 * 109.46868 * 184.09554 * 10 8 6 13 13 C 1.50698 * 109.47126 * 304.09524 * 10 8 6 14 14 H 1.07995 * 120.00380 * 0.02562 * 13 10 8 15 15 C 1.37879 * 119.99565 * 179.97438 * 13 10 8 16 16 N 1.31510 * 120.00359 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99744 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47139 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46875 * 120.00398 * 17 15 13 20 20 H 1.48502 * 109.47126 * 240.00336 * 17 15 13 21 21 C 1.34419 * 124.34523 * 90.02712 * 3 2 1 22 22 O 1.21274 * 124.94675 * 0.42742 * 21 3 2 23 23 H 1.08994 * 109.47081 * 60.00321 * 1 2 3 24 24 H 1.09005 * 109.46741 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46930 * 299.99370 * 1 2 3 26 26 H 1.08994 * 109.47350 * 120.00158 * 2 1 3 27 27 H 1.08998 * 109.47172 * 240.00167 * 2 1 3 28 28 H 1.09003 * 110.24917 * 281.98284 * 4 3 2 29 29 H 1.08994 * 110.24934 * 43.98330 * 4 3 2 30 30 H 1.08996 * 111.19089 * 267.59518 * 5 4 3 31 31 H 1.09000 * 110.85308 * 143.79030 * 5 4 3 32 32 H 1.08990 * 109.47055 * 60.00163 * 9 8 6 33 33 H 1.09004 * 109.46573 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47165 * 299.99521 * 9 8 6 35 35 H 1.09000 * 109.47149 * 304.13500 * 12 10 8 36 36 H 1.08999 * 109.46878 * 64.13432 * 12 10 8 37 37 H 1.08996 * 109.46977 * 184.12992 * 12 10 8 38 38 H 0.97000 * 119.99844 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2997 2.1601 -1.2117 5 6 2.3524 3.6348 -0.7484 6 6 2.7506 3.4821 0.7379 7 1 2.2495 4.2349 1.3463 8 7 4.2077 3.5819 0.8954 9 6 4.8942 2.5467 0.1113 10 6 4.5902 3.5097 2.3120 11 1 4.3228 2.5312 2.7111 12 6 6.1001 3.7189 2.4439 13 6 3.8651 4.5821 3.0834 14 1 3.1876 5.2503 2.5727 15 6 4.0659 4.7096 4.4415 16 7 4.8905 3.8956 5.0636 17 14 3.1666 6.0385 5.3979 18 1 2.3033 6.8158 4.4729 19 1 2.3258 5.4095 6.4481 20 1 4.1554 6.9462 6.0333 21 6 2.2716 2.0962 1.1098 22 8 2.1361 1.6892 2.2442 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.2574 1.8614 -1.6382 29 1 1.5019 2.0235 -1.9416 30 1 1.3775 4.1128 -0.8440 31 1 3.1119 4.1881 -1.3009 32 1 4.6477 2.6668 -0.9436 33 1 5.9716 2.6438 0.2457 34 1 4.5728 1.5616 0.4497 35 1 6.6234 2.9883 1.8271 36 1 6.3577 4.7250 2.1129 37 1 6.3947 3.5926 3.4856 38 1 5.0320 3.9856 6.0190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696581159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:01 Heat of formation + Delta-G solvation = -39.897243 kcal Electronic energy + Delta-G solvation = -18691.337691 eV Core-core repulsion = 15954.386358 eV Total energy + Delta-G solvation = -2736.951332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.85743 -38.16095 -37.37217 -35.07132 -33.66923 -30.88944 -29.86864 -29.01201 -27.01405 -25.56666 -24.36077 -22.24655 -21.60272 -20.07042 -18.53498 -18.04926 -17.42109 -16.67582 -16.40188 -15.64242 -15.48787 -14.96557 -14.71294 -14.56202 -14.28061 -13.88166 -13.85414 -13.54204 -13.18568 -12.96369 -12.90786 -12.69284 -12.53612 -12.33414 -12.23673 -12.13119 -12.05771 -11.78017 -11.44506 -11.07993 -10.82276 -10.50622 -9.61594 -8.96130 -8.09612 -6.19218 1.37925 1.39758 1.51055 1.63218 2.13561 2.42356 3.17784 3.27563 3.62645 3.71914 4.11024 4.18472 4.22095 4.34911 4.44007 4.47504 4.56337 4.66705 4.78967 4.80651 4.85901 4.94421 4.96032 5.05097 5.15389 5.20861 5.23804 5.25923 5.52230 5.68899 5.75240 5.79347 6.16695 6.23983 6.28368 6.64545 6.92179 7.30975 7.47837 8.98188 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.008229 C = 0.007479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.949914 B = 3401.989884 C = 3743.140376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.115 3.885 3 N -0.619 5.619 4 C 0.099 3.901 5 C -0.116 4.116 6 C 0.053 3.947 7 H 0.088 0.912 8 N -0.507 5.507 9 C 0.015 3.985 10 C 0.212 3.788 11 H -0.038 1.038 12 C -0.119 4.119 13 C -0.509 4.509 14 H 0.060 0.940 15 C 0.005 3.995 16 N -0.924 5.924 17 Si 0.958 3.042 18 H -0.262 1.262 19 H -0.290 1.290 20 H -0.274 1.274 21 C 0.479 3.521 22 O -0.579 6.579 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.068 0.932 34 H -0.003 1.003 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 -4.196 -17.457 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.007 4.007 3 N -0.355 5.355 4 C -0.022 4.022 5 C -0.154 4.154 6 C -0.060 4.060 7 H 0.106 0.894 8 N -0.231 5.231 9 C -0.133 4.133 10 C 0.105 3.895 11 H -0.020 1.020 12 C -0.177 4.177 13 C -0.547 4.547 14 H 0.078 0.922 15 C -0.192 4.192 16 N -0.565 5.565 17 Si 0.783 3.217 18 H -0.186 1.186 19 H -0.216 1.216 20 H -0.200 1.200 21 C 0.265 3.735 22 O -0.457 6.457 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.015 0.985 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.704 -4.065 -16.889 18.284 hybrid contribution -0.494 -0.462 1.834 1.954 sum -6.197 -4.527 -15.055 16.899 Atomic orbital electron populations 1.22071 0.94746 1.03142 1.01645 1.21463 0.95242 0.80993 1.02972 1.48626 1.65073 1.14237 1.07516 1.22539 1.03381 0.89891 0.86407 1.22776 1.04312 0.96649 0.91636 1.22611 0.90625 0.92795 0.99936 0.89403 1.62481 1.03245 1.45946 1.11467 1.22710 0.99844 0.91225 0.99507 1.19079 0.93374 0.93811 0.83217 1.02037 1.21657 0.96453 0.98682 1.00934 1.21377 1.24992 1.15392 0.92957 0.92205 1.25743 0.96272 0.98443 0.98788 1.70056 1.37721 1.39252 1.09424 0.85505 0.78564 0.79104 0.78477 1.18562 1.21647 1.19962 1.22516 0.76007 0.90556 0.84397 1.90684 1.54015 1.76902 1.24050 0.90426 0.89600 0.95687 0.93644 0.86851 0.89405 0.86954 0.88073 0.86671 0.87678 0.91342 0.98478 0.94846 0.94298 0.92824 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.24 71.98 0.74 -2.59 16 2 C 0.11 2.82 6.65 86.38 0.57 3.39 16 3 N -0.62 -18.27 2.68 -817.62 -2.19 -20.46 16 4 C 0.10 1.93 6.47 86.90 0.56 2.49 16 5 C -0.12 -2.73 6.25 31.72 0.20 -2.53 16 6 C 0.05 2.07 2.89 44.91 0.13 2.20 16 7 H 0.09 4.01 6.12 -2.39 -0.01 3.99 16 8 N -0.51 -21.64 4.62 -876.21 -4.05 -25.69 16 9 C 0.01 0.52 7.88 127.69 1.01 1.52 16 10 C 0.21 11.56 1.75 44.17 0.08 11.64 16 11 H -0.04 -2.46 6.76 -2.39 -0.02 -2.47 16 12 C -0.12 -6.14 8.80 71.98 0.63 -5.50 16 13 C -0.51 -29.87 7.87 25.60 0.20 -29.67 16 14 H 0.06 3.43 6.43 -2.91 -0.02 3.41 16 15 C 0.01 0.32 5.30 84.66 0.45 0.77 16 16 N -0.92 -57.87 11.36 21.45 0.24 -57.63 16 17 Si 0.96 46.91 29.54 68.60 2.03 48.94 16 18 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 21 C 0.48 20.33 5.65 87.90 0.50 20.83 16 22 O -0.58 -32.07 16.45 -3.01 -0.05 -32.12 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.04 1.41 7.92 -2.39 -0.02 1.39 16 27 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 28 H 0.09 1.45 6.16 -2.39 -0.01 1.44 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.11 2.33 7.74 -2.39 -0.02 2.31 16 32 H 0.10 2.61 5.19 -2.39 -0.01 2.60 16 33 H 0.07 2.36 6.02 -2.38 -0.01 2.34 16 34 H 0.00 -0.13 6.86 -2.38 -0.02 -0.15 16 35 H 0.03 1.49 6.11 -2.39 -0.01 1.48 16 36 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 3.08 6.19 -2.39 -0.01 3.07 16 38 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -79.38 292.52 2.09 -77.29 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.04 Total: 7.14 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 5.07 Total: 2.54 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.99 Total: -103.78 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.38 2.09 -77.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.393 kcal (2) G-P(sol) polarization free energy of solvation -79.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds