Wall clock time and date at job start Mon Mar 30 2020 03:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47223 * 2 1 4 4 C 1.46766 * 124.34709 * 269.72675 * 3 2 1 5 5 C 1.54482 * 105.47318 * 163.24908 * 4 3 2 6 6 C 1.54624 * 101.76698 * 25.41330 * 5 4 3 7 7 H 1.09000 * 110.59992 * 93.93597 * 6 5 4 8 8 N 1.46899 * 110.48737 * 216.52737 * 6 5 4 9 9 C 1.46898 * 110.99690 * 310.45141 * 8 6 5 10 10 C 1.46902 * 110.99800 * 186.50349 * 8 6 5 11 11 H 1.09006 * 109.46949 * 309.15887 * 10 8 6 12 12 C 1.52995 * 109.47472 * 69.16550 * 10 8 6 13 13 C 1.50704 * 109.46947 * 189.16791 * 10 8 6 14 14 H 1.08002 * 119.99643 * 359.97438 * 13 10 8 15 15 C 1.37872 * 120.00075 * 179.97438 * 13 10 8 16 16 N 1.31522 * 119.99876 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 120.00131 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47167 * 90.00023 * 17 15 13 19 19 H 1.48498 * 109.47482 * 209.99984 * 17 15 13 20 20 H 1.48503 * 109.47205 * 330.00427 * 17 15 13 21 21 C 1.34417 * 124.35310 * 90.02137 * 3 2 1 22 22 O 1.21284 * 124.94135 * 0.12644 * 21 3 2 23 23 H 1.09004 * 109.47313 * 300.00337 * 1 2 3 24 24 H 1.08999 * 109.47436 * 60.00287 * 1 2 3 25 25 H 1.09003 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47313 * 239.99663 * 2 1 3 27 27 H 1.08999 * 109.47436 * 119.99713 * 2 1 3 28 28 H 1.09004 * 110.24654 * 282.24796 * 4 3 2 29 29 H 1.09004 * 110.24731 * 44.24528 * 4 3 2 30 30 H 1.09005 * 110.96391 * 267.29371 * 5 4 3 31 31 H 1.09001 * 111.00288 * 143.54873 * 5 4 3 32 32 H 1.09001 * 109.47249 * 60.00323 * 9 8 6 33 33 H 1.09005 * 109.46633 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.47572 * 300.00159 * 9 8 6 35 35 H 1.08997 * 109.47571 * 59.99954 * 12 10 8 36 36 H 1.09004 * 109.47436 * 180.02562 * 12 10 8 37 37 H 1.09007 * 109.47073 * 299.99956 * 12 10 8 38 38 H 0.97000 * 119.99526 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3630 3.6327 -0.7497 6 6 2.7569 3.4799 0.7377 7 1 3.8380 3.5499 0.8573 8 7 2.0834 4.4979 1.5551 9 6 2.2517 5.8362 0.9730 10 6 2.5657 4.4628 2.9422 11 1 2.5155 3.4410 3.3186 12 6 4.0138 4.9539 2.9914 13 6 1.7031 5.3556 3.7967 14 1 0.8794 5.8954 3.3534 15 6 1.9656 5.4832 5.1442 16 7 2.9690 4.8262 5.6838 17 14 0.8969 6.5904 6.2031 18 1 -0.2380 5.8054 6.7518 19 1 1.7065 7.1377 7.3212 20 1 0.3724 7.7083 5.3782 21 6 2.2715 2.0962 1.1097 22 8 2.1311 1.6910 2.2442 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2552 1.8579 -1.6408 29 1 1.4996 2.0271 -1.9399 30 1 1.3902 4.1145 -0.8482 31 1 3.1260 4.1826 -1.3008 32 1 1.8232 5.8530 -0.0291 33 1 1.7438 6.5707 1.5981 34 1 3.3131 6.0778 0.9184 35 1 4.0640 5.9757 2.6151 36 1 4.3718 4.9274 4.0206 37 1 4.6377 4.3081 2.3734 38 1 3.1538 4.9163 6.6317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696581248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:04 Heat of formation + Delta-G solvation = -17.972614 kcal Electronic energy + Delta-G solvation = -18398.250826 eV Core-core repulsion = 15662.250217 eV Total energy + Delta-G solvation = -2736.000609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18069 -36.75112 -35.95598 -33.41789 -32.08761 -29.27194 -28.05821 -27.13788 -25.11599 -24.32736 -23.26508 -21.02495 -19.71675 -18.43844 -16.58210 -16.35260 -15.88903 -15.09064 -14.80831 -14.15369 -13.81094 -13.55005 -13.31732 -13.27810 -12.74547 -12.38455 -12.22133 -11.96017 -11.79280 -11.71025 -11.21305 -11.08043 -10.99561 -10.88014 -10.70204 -10.50753 -10.32010 -9.94479 -9.79762 -9.15535 -8.62110 -8.43059 -8.17858 -7.13640 -5.86796 -3.89465 3.10467 3.32471 3.39293 3.44986 3.47774 4.50794 4.67705 4.76562 4.92594 5.13674 5.21579 5.38684 5.44522 5.44831 5.50100 5.56885 5.75884 5.79037 5.94957 6.02399 6.14586 6.23122 6.28384 6.38872 6.72462 6.85162 6.86156 6.97710 7.25285 7.45131 7.57866 7.78792 7.93871 8.34786 8.47397 8.68033 8.78507 9.15650 9.73275 11.20689 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.007159 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.616693 B = 3910.438903 C = 4261.269883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 N -0.630 5.630 4 C 0.109 3.891 5 C -0.128 4.128 6 C 0.047 3.953 7 H 0.072 0.928 8 N -0.517 5.517 9 C 0.032 3.968 10 C 0.196 3.804 11 H 0.071 0.929 12 C -0.170 4.170 13 C -0.495 4.495 14 H 0.060 0.940 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.529 3.471 22 O -0.502 6.502 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.018 0.982 35 H 0.029 0.971 36 H 0.089 0.911 37 H 0.003 0.997 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -5.286 -15.505 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.003 3.997 3 N -0.368 5.368 4 C -0.015 4.015 5 C -0.167 4.167 6 C -0.065 4.065 7 H 0.090 0.910 8 N -0.242 5.242 9 C -0.116 4.116 10 C 0.090 3.910 11 H 0.089 0.911 12 C -0.229 4.229 13 C -0.533 4.533 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.201 1.201 21 C 0.316 3.684 22 O -0.374 6.374 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.107 0.893 37 H 0.022 0.978 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.992 -5.716 -14.674 15.779 hybrid contribution 0.378 0.771 0.533 1.010 sum -0.614 -4.945 -14.141 14.993 Atomic orbital electron populations 1.22155 0.96081 1.01766 1.02715 1.21220 0.94241 0.81715 1.02474 1.48290 1.67480 1.13679 1.07332 1.21969 1.00567 0.91305 0.87618 1.22753 1.03595 0.95246 0.95062 1.22252 0.98226 0.92517 0.93500 0.91050 1.62446 1.55491 1.02139 1.04095 1.22292 0.98851 0.92060 0.98389 1.19649 0.90001 0.99794 0.81563 0.91094 1.22396 1.00012 0.97367 1.03147 1.21066 1.13435 1.26190 0.92652 0.92204 1.24910 0.95456 0.96176 0.97836 1.69909 1.28934 1.42420 1.11972 0.86547 0.80352 0.80724 0.80013 1.20791 1.21453 1.20058 1.20809 0.76160 0.87305 0.84158 1.90725 1.51265 1.74635 1.20763 0.91822 0.92699 0.91915 0.91019 0.90294 0.91777 0.90956 0.89096 0.89942 0.93601 0.90482 0.96366 0.95234 0.89270 0.97841 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.15 0.38 -1.61 16 2 C 0.13 1.57 6.65 -4.04 -0.03 1.54 16 3 N -0.63 -9.47 2.93 -172.41 -0.51 -9.97 16 4 C 0.11 1.23 7.35 -3.12 -0.02 1.20 16 5 C -0.13 -1.67 5.47 -25.10 -0.14 -1.81 16 6 C 0.05 0.88 2.56 -67.72 -0.17 0.71 16 7 H 0.07 1.37 6.34 -51.93 -0.33 1.04 16 8 N -0.52 -11.47 4.56 -228.31 -1.04 -12.51 16 9 C 0.03 0.62 8.30 60.06 0.50 1.12 16 10 C 0.20 5.23 2.20 -68.86 -0.15 5.08 16 11 H 0.07 2.19 5.69 -51.93 -0.30 1.89 16 12 C -0.17 -4.31 8.25 37.15 0.31 -4.01 16 13 C -0.49 -14.25 7.90 -34.44 -0.27 -14.52 16 14 H 0.06 1.71 7.06 -52.49 -0.37 1.34 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -26.88 11.32 55.43 0.63 -26.25 16 17 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.53 10.64 7.62 -10.86 -0.08 10.56 16 22 O -0.50 -12.57 15.25 5.55 0.08 -12.48 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.21 7.18 -51.93 -0.37 0.84 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.71 6.38 -51.93 -0.33 0.38 16 33 H 0.08 1.61 6.70 -51.93 -0.35 1.26 16 34 H 0.02 0.34 6.46 -51.93 -0.34 0.00 16 35 H 0.03 0.70 6.42 -51.93 -0.33 0.37 16 36 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 37 H 0.00 0.06 6.52 -51.93 -0.34 -0.28 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -33.47 294.81 -7.06 -40.53 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.88 Total: -0.83 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 0.22 Total: -0.19 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.92 Total: -48.73 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.47 -7.06 -40.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.560 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds