Wall clock time and date at job start Mon Mar 30 2020 03:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47223 * 2 1 4 4 C 1.46766 * 124.34709 * 269.72675 * 3 2 1 5 5 C 1.54482 * 105.47318 * 163.24908 * 4 3 2 6 6 C 1.54624 * 101.76698 * 25.41330 * 5 4 3 7 7 H 1.09000 * 110.59992 * 93.93597 * 6 5 4 8 8 N 1.46899 * 110.48737 * 216.52737 * 6 5 4 9 9 C 1.46898 * 110.99690 * 310.45141 * 8 6 5 10 10 C 1.46902 * 110.99800 * 186.50349 * 8 6 5 11 11 H 1.09006 * 109.46949 * 309.15887 * 10 8 6 12 12 C 1.52995 * 109.47472 * 69.16550 * 10 8 6 13 13 C 1.50704 * 109.46947 * 189.16791 * 10 8 6 14 14 H 1.08002 * 119.99643 * 359.97438 * 13 10 8 15 15 C 1.37872 * 120.00075 * 179.97438 * 13 10 8 16 16 N 1.31522 * 119.99876 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 120.00131 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47167 * 90.00023 * 17 15 13 19 19 H 1.48498 * 109.47482 * 209.99984 * 17 15 13 20 20 H 1.48503 * 109.47205 * 330.00427 * 17 15 13 21 21 C 1.34417 * 124.35310 * 90.02137 * 3 2 1 22 22 O 1.21284 * 124.94135 * 0.12644 * 21 3 2 23 23 H 1.09004 * 109.47313 * 300.00337 * 1 2 3 24 24 H 1.08999 * 109.47436 * 60.00287 * 1 2 3 25 25 H 1.09003 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47313 * 239.99663 * 2 1 3 27 27 H 1.08999 * 109.47436 * 119.99713 * 2 1 3 28 28 H 1.09004 * 110.24654 * 282.24796 * 4 3 2 29 29 H 1.09004 * 110.24731 * 44.24528 * 4 3 2 30 30 H 1.09005 * 110.96391 * 267.29371 * 5 4 3 31 31 H 1.09001 * 111.00288 * 143.54873 * 5 4 3 32 32 H 1.09001 * 109.47249 * 60.00323 * 9 8 6 33 33 H 1.09005 * 109.46633 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.47572 * 300.00159 * 9 8 6 35 35 H 1.08997 * 109.47571 * 59.99954 * 12 10 8 36 36 H 1.09004 * 109.47436 * 180.02562 * 12 10 8 37 37 H 1.09007 * 109.47073 * 299.99956 * 12 10 8 38 38 H 0.97000 * 119.99526 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3630 3.6327 -0.7497 6 6 2.7569 3.4799 0.7377 7 1 3.8380 3.5499 0.8573 8 7 2.0834 4.4979 1.5551 9 6 2.2517 5.8362 0.9730 10 6 2.5657 4.4628 2.9422 11 1 2.5155 3.4410 3.3186 12 6 4.0138 4.9539 2.9914 13 6 1.7031 5.3556 3.7967 14 1 0.8794 5.8954 3.3534 15 6 1.9656 5.4832 5.1442 16 7 2.9690 4.8262 5.6838 17 14 0.8969 6.5904 6.2031 18 1 -0.2380 5.8054 6.7518 19 1 1.7065 7.1377 7.3212 20 1 0.3724 7.7083 5.3782 21 6 2.2715 2.0962 1.1097 22 8 2.1311 1.6910 2.2442 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2552 1.8579 -1.6408 29 1 1.4996 2.0271 -1.9399 30 1 1.3902 4.1145 -0.8482 31 1 3.1260 4.1826 -1.3008 32 1 1.8232 5.8530 -0.0291 33 1 1.7438 6.5707 1.5981 34 1 3.3131 6.0778 0.9184 35 1 4.0640 5.9757 2.6151 36 1 4.3718 4.9274 4.0206 37 1 4.6377 4.3081 2.3734 38 1 3.1538 4.9163 6.6317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696581248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:03 Heat of formation + Delta-G solvation = -42.653078 kcal Electronic energy + Delta-G solvation = -18399.321051 eV Core-core repulsion = 15662.250217 eV Total energy + Delta-G solvation = -2737.070834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55827 -38.44826 -37.41712 -35.07325 -33.70588 -30.88344 -29.51472 -28.52635 -27.27349 -25.89837 -24.33388 -22.49102 -21.32600 -19.92317 -18.22777 -17.90039 -17.48578 -16.86272 -16.23580 -15.78916 -15.23627 -15.15053 -14.60575 -14.55835 -14.34518 -13.92491 -13.70416 -13.40306 -13.23147 -13.07540 -12.88233 -12.65292 -12.63843 -12.29657 -12.28178 -12.05926 -11.99428 -11.92239 -11.64316 -10.96513 -10.61579 -10.27665 -9.62473 -8.85770 -8.07692 -6.18471 1.39317 1.41868 1.51576 1.63940 2.14103 2.43442 3.21101 3.42724 3.50221 3.73656 4.10221 4.19719 4.24137 4.32085 4.51204 4.55493 4.63676 4.72504 4.78070 4.83998 4.85974 4.88521 4.97718 5.03409 5.13703 5.18174 5.27400 5.31274 5.59160 5.69221 5.78910 5.85641 6.15275 6.29175 6.53440 6.73108 6.95167 7.34226 7.49129 8.99172 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.007159 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.616693 B = 3910.438903 C = 4261.269883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.118 3.882 3 N -0.621 5.621 4 C 0.107 3.893 5 C -0.116 4.116 6 C 0.039 3.961 7 H 0.063 0.937 8 N -0.533 5.533 9 C 0.036 3.964 10 C 0.202 3.798 11 H 0.022 0.978 12 C -0.154 4.154 13 C -0.511 4.511 14 H 0.056 0.944 15 C 0.003 3.997 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.282 1.282 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.511 3.489 22 O -0.572 6.572 23 H 0.020 0.980 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -4.840 -18.868 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.356 5.356 4 C -0.015 4.015 5 C -0.153 4.153 6 C -0.073 4.073 7 H 0.081 0.919 8 N -0.257 5.257 9 C -0.111 4.111 10 C 0.095 3.905 11 H 0.040 0.960 12 C -0.213 4.213 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.194 4.194 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.208 1.208 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.298 3.702 22 O -0.450 6.450 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.137 0.863 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.496 -5.270 -18.128 18.938 hybrid contribution 0.533 0.542 1.475 1.660 sum -0.963 -4.727 -16.652 17.337 Atomic orbital electron populations 1.22098 0.95460 1.03043 1.01393 1.21485 0.94739 0.80569 1.03530 1.48456 1.65384 1.14489 1.07290 1.22347 1.03601 0.89251 0.86295 1.22816 1.04601 0.97272 0.90644 1.22414 0.97407 0.90824 0.96637 0.91922 1.62231 1.56282 1.04506 1.02685 1.22308 0.99197 0.89782 0.99824 1.19258 0.90437 0.96490 0.84360 0.96002 1.22162 0.99592 0.98192 1.01392 1.21400 1.13656 1.26411 0.93516 0.92545 1.25784 0.96759 0.97661 0.99234 1.70072 1.30486 1.43774 1.12172 0.85493 0.78415 0.79014 0.78292 1.20843 1.20711 1.18651 1.21284 0.76060 0.88504 0.84347 1.90683 1.54554 1.76031 1.23726 0.96112 0.90832 0.89458 0.86329 0.92796 0.88657 0.87390 0.88977 0.86466 0.89271 0.92812 0.95915 0.94167 0.92513 0.96334 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.83 16 2 C 0.12 2.73 6.65 86.38 0.57 3.30 16 3 N -0.62 -17.52 2.93 -817.97 -2.40 -19.92 16 4 C 0.11 1.88 7.35 86.83 0.64 2.52 16 5 C -0.12 -2.54 5.47 31.65 0.17 -2.37 16 6 C 0.04 1.44 2.56 44.91 0.11 1.55 16 7 H 0.06 2.37 6.34 -2.39 -0.02 2.36 16 8 N -0.53 -23.75 4.56 -876.23 -3.99 -27.74 16 9 C 0.04 1.34 8.30 127.69 1.06 2.40 16 10 C 0.20 11.23 2.20 44.17 0.10 11.33 16 11 H 0.02 1.45 5.69 -2.38 -0.01 1.44 16 12 C -0.15 -8.05 8.25 71.98 0.59 -7.46 16 13 C -0.51 -30.38 7.90 25.60 0.20 -30.18 16 14 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 15 C 0.00 0.19 5.30 84.65 0.45 0.64 16 16 N -0.92 -57.91 11.32 21.45 0.24 -57.67 16 17 Si 0.96 46.65 29.54 68.60 2.03 48.68 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 21 C 0.51 20.94 7.62 87.90 0.67 21.61 16 22 O -0.57 -30.71 15.25 -3.04 -0.05 -30.76 16 23 H 0.02 0.61 8.14 -2.38 -0.02 0.60 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.05 1.52 7.93 -2.39 -0.02 1.50 16 28 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.09 2.05 7.18 -2.38 -0.02 2.03 16 31 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 2.47 6.38 -2.39 -0.02 2.46 16 33 H 0.05 2.21 6.70 -2.38 -0.02 2.19 16 34 H 0.02 0.80 6.46 -2.39 -0.02 0.78 16 35 H 0.04 1.94 6.42 -2.39 -0.02 1.93 16 36 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 37 H 0.02 0.86 6.52 -2.38 -0.02 0.84 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -79.86 294.81 2.18 -77.68 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.04 Total: 9.20 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.31 Total: 0.52 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -6.15 Total: -105.33 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.05 Total: -30.76 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -79.86 2.18 -77.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.028 kcal (2) G-P(sol) polarization free energy of solvation -79.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds