Wall clock time and date at job start Mon Mar 30 2020 03:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47301 * 2 1 4 4 C 1.46759 * 124.35064 * 90.00203 * 3 2 1 5 5 C 1.54479 * 105.47417 * 162.98278 * 4 3 2 6 6 C 1.54633 * 101.76759 * 25.41400 * 5 4 3 7 7 H 1.08991 * 110.48790 * 216.39246 * 6 5 4 8 8 N 1.46902 * 110.48481 * 93.88040 * 6 5 4 9 9 C 1.46892 * 110.99958 * 64.10562 * 8 6 5 10 10 C 1.46904 * 110.99573 * 188.06066 * 8 6 5 11 11 H 1.09000 * 109.47244 * 55.00034 * 10 8 6 12 12 C 1.52995 * 109.47054 * 294.99876 * 10 8 6 13 13 C 1.50703 * 109.46996 * 175.00025 * 10 8 6 14 14 H 1.08001 * 119.99816 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00099 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99985 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 119.99990 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47418 * 90.00034 * 17 15 13 19 19 H 1.48500 * 109.47439 * 210.00134 * 17 15 13 20 20 H 1.48500 * 109.47129 * 330.00103 * 17 15 13 21 21 C 1.34752 * 124.29776 * 269.96029 * 3 2 1 22 22 O 1.21278 * 125.12311 * 0.42137 * 21 3 2 23 23 H 1.08994 * 109.46997 * 300.00155 * 1 2 3 24 24 H 1.09002 * 109.46857 * 60.00415 * 1 2 3 25 25 H 1.09002 * 109.47108 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47055 * 239.99416 * 2 1 3 27 27 H 1.08996 * 109.47431 * 120.00273 * 2 1 3 28 28 H 1.08999 * 110.24866 * 43.97912 * 4 3 2 29 29 H 1.09001 * 110.31716 * 282.01688 * 4 3 2 30 30 H 1.08995 * 110.97020 * 267.29553 * 5 4 3 31 31 H 1.09002 * 111.00189 * 143.54686 * 5 4 3 32 32 H 1.09003 * 109.47156 * 177.25506 * 9 8 6 33 33 H 1.08993 * 109.47734 * 297.25253 * 9 8 6 34 34 H 1.09005 * 109.47386 * 57.26110 * 9 8 6 35 35 H 1.08998 * 109.47003 * 180.02562 * 12 10 8 36 36 H 1.09000 * 109.47224 * 300.00171 * 12 10 8 37 37 H 1.09002 * 109.47279 * 60.00094 * 12 10 8 38 38 H 0.96999 * 120.00018 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2116 5 6 3.1746 3.3440 0.7486 6 6 2.7696 3.4753 -0.7380 7 1 3.6323 3.7481 -1.3457 8 7 1.6982 4.4684 -0.8931 9 6 2.1626 5.8080 -0.5093 10 6 1.1732 4.4661 -2.2651 11 1 0.8535 3.4583 -2.5302 12 6 2.2677 4.9245 -3.2308 13 6 -0.0017 5.4057 -2.3549 14 1 -0.3261 5.9497 -1.4801 15 6 -0.6624 5.5708 -3.5537 16 7 -0.2677 4.9079 -4.6188 17 14 -2.1190 6.7348 -3.6648 18 1 -1.6406 8.0934 -4.0260 19 1 -3.0624 6.2497 -4.7040 20 1 -2.8123 6.7869 -2.3525 21 6 2.2722 2.0968 -1.1132 22 8 2.1240 1.6971 -2.2486 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8899 28 1 2.8324 1.5530 1.9383 29 1 1.3645 2.5309 1.6442 30 1 4.2332 3.1032 0.8447 31 1 2.9314 4.2518 1.3008 32 1 1.3654 6.5316 -0.6798 33 1 2.4351 5.8097 0.5460 34 1 3.0318 6.0771 -1.1095 35 1 1.8780 4.9232 -4.2487 36 1 2.5874 5.9323 -2.9658 37 1 3.1175 4.2449 -3.1659 38 1 -0.7327 5.0237 -5.4621 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696581255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:06 Heat of formation + Delta-G solvation = -19.030645 kcal Electronic energy + Delta-G solvation = -18585.587236 eV Core-core repulsion = 15849.540748 eV Total energy + Delta-G solvation = -2736.046489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17143 -36.68312 -35.93451 -33.39188 -32.05371 -29.19526 -28.03123 -27.17053 -25.08990 -24.29682 -23.24713 -21.07897 -19.71772 -18.45383 -16.46171 -16.25100 -15.92544 -15.15763 -14.77423 -14.01907 -13.84215 -13.60728 -13.25853 -13.08642 -12.73508 -12.34903 -12.24916 -11.98546 -11.66458 -11.55358 -11.28713 -11.14447 -10.92929 -10.75805 -10.67991 -10.56155 -10.36415 -9.94651 -9.77392 -9.09480 -8.73598 -8.35982 -8.22937 -7.21507 -5.90520 -3.95650 3.09357 3.34840 3.38887 3.41417 3.44910 4.46606 4.75486 4.81720 4.97242 5.16901 5.28927 5.40191 5.44521 5.54450 5.62687 5.66340 5.86332 5.96666 5.98427 6.10977 6.17469 6.20754 6.37087 6.44986 6.74350 6.91627 6.95868 7.00403 7.27125 7.48267 7.55374 7.79631 7.87289 8.21861 8.44272 8.62757 8.75341 9.09786 9.67916 11.15987 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.008104 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.761384 B = 3454.302501 C = 3819.782929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.623 5.623 4 C 0.116 3.884 5 C -0.131 4.131 6 C 0.048 3.952 7 H 0.066 0.934 8 N -0.516 5.516 9 C 0.033 3.967 10 C 0.203 3.797 11 H 0.057 0.943 12 C -0.166 4.166 13 C -0.503 4.503 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.534 3.466 22 O -0.514 6.514 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.087 0.913 36 H 0.025 0.975 37 H 0.008 0.992 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -5.444 12.377 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.360 5.360 4 C -0.007 4.007 5 C -0.169 4.169 6 C -0.064 4.064 7 H 0.084 0.916 8 N -0.242 5.242 9 C -0.115 4.115 10 C 0.097 3.903 11 H 0.075 0.925 12 C -0.225 4.225 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.723 3.277 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.321 3.679 22 O -0.387 6.387 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.027 0.973 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.504 -5.913 11.869 14.357 hybrid contribution -0.172 0.870 -0.672 1.113 sum 5.332 -5.043 11.197 13.388 Atomic orbital electron populations 1.22157 0.95908 1.01628 1.03117 1.21227 0.94480 0.81628 1.02227 1.48312 1.66836 1.13427 1.07408 1.21892 0.99479 0.92308 0.87016 1.22724 0.98874 0.99121 0.96207 1.22300 0.95888 0.92402 0.95857 0.91628 1.62488 1.28306 1.03734 1.29718 1.22298 0.99735 0.91744 0.97737 1.19496 0.92100 0.98883 0.79812 0.92548 1.22315 0.97554 0.96961 1.05686 1.21086 1.13005 1.24727 0.95310 0.92055 1.24935 0.97397 0.96176 0.95807 1.69931 1.40630 1.41629 1.00484 0.86557 0.82560 0.80883 0.77720 1.20863 1.21345 1.19931 1.20766 0.76111 0.86927 0.84126 1.90731 1.52052 1.75062 1.20879 0.92511 0.91642 0.92061 0.90489 0.91077 0.91466 0.91088 0.90723 0.88721 0.90093 0.93587 0.96364 0.89390 0.95578 0.97281 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.13 1.70 6.66 -4.04 -0.03 1.67 16 3 N -0.62 -9.98 2.94 -172.33 -0.51 -10.49 16 4 C 0.12 1.47 7.35 -3.13 -0.02 1.44 16 5 C -0.13 -1.73 6.68 -25.10 -0.17 -1.90 16 6 C 0.05 0.89 2.18 -67.72 -0.15 0.75 16 7 H 0.07 1.28 6.77 -51.93 -0.35 0.93 16 8 N -0.52 -11.15 4.62 -228.31 -1.05 -12.20 16 9 C 0.03 0.62 8.50 60.06 0.51 1.13 16 10 C 0.20 5.37 2.03 -68.86 -0.14 5.23 16 11 H 0.06 1.73 5.90 -51.93 -0.31 1.42 16 12 C -0.17 -4.31 8.28 37.16 0.31 -4.00 16 13 C -0.50 -14.15 7.85 -34.44 -0.27 -14.42 16 14 H 0.06 1.70 6.79 -52.49 -0.36 1.34 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -26.62 11.32 55.43 0.63 -25.99 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.53 10.93 6.80 -10.71 -0.07 10.86 16 22 O -0.51 -12.78 16.01 5.56 0.09 -12.70 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.11 7.94 -51.93 -0.41 0.69 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.16 6.10 -51.93 -0.32 0.84 16 32 H 0.08 1.66 6.35 -51.93 -0.33 1.33 16 33 H 0.05 0.70 6.30 -51.93 -0.33 0.37 16 34 H 0.02 0.34 6.67 -51.93 -0.35 -0.01 16 35 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 36 H 0.03 0.63 6.54 -51.93 -0.34 0.29 16 37 H 0.01 0.21 6.66 -51.93 -0.35 -0.14 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 294.99 15.07 4.45 4.45 Total: -1.00 -32.87 294.99 -7.01 -39.87 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.84 Total: -0.20 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 0.26 Total: 0.40 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.93 Total: -48.68 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.87 -7.01 -39.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.843 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds