Wall clock time and date at job start Mon Mar 30 2020 03:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47301 * 2 1 4 4 C 1.46759 * 124.35064 * 90.00203 * 3 2 1 5 5 C 1.54479 * 105.47417 * 162.98278 * 4 3 2 6 6 C 1.54633 * 101.76759 * 25.41400 * 5 4 3 7 7 H 1.08991 * 110.48790 * 216.39246 * 6 5 4 8 8 N 1.46902 * 110.48481 * 93.88040 * 6 5 4 9 9 C 1.46892 * 110.99958 * 64.10562 * 8 6 5 10 10 C 1.46904 * 110.99573 * 188.06066 * 8 6 5 11 11 H 1.09000 * 109.47244 * 55.00034 * 10 8 6 12 12 C 1.52995 * 109.47054 * 294.99876 * 10 8 6 13 13 C 1.50703 * 109.46996 * 175.00025 * 10 8 6 14 14 H 1.08001 * 119.99816 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00099 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99985 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 119.99990 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47418 * 90.00034 * 17 15 13 19 19 H 1.48500 * 109.47439 * 210.00134 * 17 15 13 20 20 H 1.48500 * 109.47129 * 330.00103 * 17 15 13 21 21 C 1.34752 * 124.29776 * 269.96029 * 3 2 1 22 22 O 1.21278 * 125.12311 * 0.42137 * 21 3 2 23 23 H 1.08994 * 109.46997 * 300.00155 * 1 2 3 24 24 H 1.09002 * 109.46857 * 60.00415 * 1 2 3 25 25 H 1.09002 * 109.47108 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47055 * 239.99416 * 2 1 3 27 27 H 1.08996 * 109.47431 * 120.00273 * 2 1 3 28 28 H 1.08999 * 110.24866 * 43.97912 * 4 3 2 29 29 H 1.09001 * 110.31716 * 282.01688 * 4 3 2 30 30 H 1.08995 * 110.97020 * 267.29553 * 5 4 3 31 31 H 1.09002 * 111.00189 * 143.54686 * 5 4 3 32 32 H 1.09003 * 109.47156 * 177.25506 * 9 8 6 33 33 H 1.08993 * 109.47734 * 297.25253 * 9 8 6 34 34 H 1.09005 * 109.47386 * 57.26110 * 9 8 6 35 35 H 1.08998 * 109.47003 * 180.02562 * 12 10 8 36 36 H 1.09000 * 109.47224 * 300.00171 * 12 10 8 37 37 H 1.09002 * 109.47279 * 60.00094 * 12 10 8 38 38 H 0.96999 * 120.00018 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2116 5 6 3.1746 3.3440 0.7486 6 6 2.7696 3.4753 -0.7380 7 1 3.6323 3.7481 -1.3457 8 7 1.6982 4.4684 -0.8931 9 6 2.1626 5.8080 -0.5093 10 6 1.1732 4.4661 -2.2651 11 1 0.8535 3.4583 -2.5302 12 6 2.2677 4.9245 -3.2308 13 6 -0.0017 5.4057 -2.3549 14 1 -0.3261 5.9497 -1.4801 15 6 -0.6624 5.5708 -3.5537 16 7 -0.2677 4.9079 -4.6188 17 14 -2.1190 6.7348 -3.6648 18 1 -1.6406 8.0934 -4.0260 19 1 -3.0624 6.2497 -4.7040 20 1 -2.8123 6.7869 -2.3525 21 6 2.2722 2.0968 -1.1132 22 8 2.1240 1.6971 -2.2486 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8899 28 1 2.8324 1.5530 1.9383 29 1 1.3645 2.5309 1.6442 30 1 4.2332 3.1032 0.8447 31 1 2.9314 4.2518 1.3008 32 1 1.3654 6.5316 -0.6798 33 1 2.4351 5.8097 0.5460 34 1 3.0318 6.0771 -1.1095 35 1 1.8780 4.9232 -4.2487 36 1 2.5874 5.9323 -2.9658 37 1 3.1175 4.2449 -3.1659 38 1 -0.7327 5.0237 -5.4621 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696581255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:06 Heat of formation + Delta-G solvation = -43.185094 kcal Electronic energy + Delta-G solvation = -18586.634652 eV Core-core repulsion = 15849.540748 eV Total energy + Delta-G solvation = -2737.093904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60353 -38.40154 -37.42925 -35.08441 -33.69941 -30.85528 -29.55261 -28.58069 -27.25027 -25.88882 -24.41269 -22.61618 -21.31607 -19.96138 -18.29843 -17.69868 -17.58468 -16.74134 -16.50804 -15.59862 -15.36894 -15.12731 -14.60897 -14.44188 -14.37806 -13.96567 -13.73897 -13.50985 -13.25560 -13.04853 -12.84426 -12.76891 -12.60026 -12.41822 -12.15706 -12.10409 -12.03289 -11.86268 -11.60074 -10.92555 -10.64675 -10.42037 -9.60594 -8.95081 -8.08975 -6.22399 1.39979 1.41863 1.52211 1.56062 2.17176 2.42106 3.19250 3.40212 3.48372 3.72028 4.07547 4.16992 4.30452 4.40649 4.51581 4.55101 4.66472 4.72199 4.75322 4.83155 4.83800 4.86765 4.96134 5.00512 5.14796 5.19421 5.29188 5.33209 5.57989 5.67051 5.74117 5.82155 6.13450 6.21980 6.44022 6.66379 6.92527 7.28218 7.46455 8.97379 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.008104 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.761384 B = 3454.302501 C = 3819.782929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.120 3.880 3 N -0.616 5.616 4 C 0.111 3.889 5 C -0.115 4.115 6 C 0.039 3.961 7 H 0.052 0.948 8 N -0.522 5.522 9 C 0.035 3.965 10 C 0.212 3.788 11 H 0.006 0.994 12 C -0.150 4.150 13 C -0.515 4.515 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.924 5.924 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.264 1.264 21 C 0.514 3.486 22 O -0.578 6.578 23 H 0.067 0.933 24 H 0.013 0.987 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.016 0.984 35 H 0.053 0.947 36 H 0.036 0.964 37 H 0.011 0.989 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -5.072 15.899 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.002 4.002 3 N -0.350 5.350 4 C -0.011 4.011 5 C -0.153 4.153 6 C -0.073 4.073 7 H 0.070 0.930 8 N -0.247 5.247 9 C -0.112 4.112 10 C 0.105 3.895 11 H 0.024 0.976 12 C -0.209 4.209 13 C -0.553 4.553 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.564 5.564 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.302 3.698 22 O -0.457 6.457 23 H 0.086 0.914 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.030 0.970 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.976 -5.538 15.477 17.491 hybrid contribution -0.281 0.677 -1.702 1.853 sum 5.694 -4.862 13.775 15.679 Atomic orbital electron populations 1.22109 0.96204 1.02892 1.00982 1.21496 0.94209 0.80632 1.03821 1.48517 1.64890 1.14238 1.07375 1.22244 1.00171 0.92505 0.86162 1.22792 1.00857 1.00276 0.91347 1.22460 0.94232 0.90616 0.99949 0.93024 1.62340 1.30278 1.05840 1.26250 1.22350 0.98788 0.89623 1.00485 1.19090 0.92100 0.95596 0.82755 0.97592 1.22099 0.97530 0.97548 1.03716 1.21424 1.13645 1.24781 0.95452 0.91685 1.25851 1.00353 0.97871 0.95446 1.70115 1.42024 1.43278 1.01010 0.85452 0.78837 0.78815 0.77887 1.19721 1.21449 1.18872 1.21267 0.76123 0.88128 0.84291 1.90681 1.54973 1.76407 1.23596 0.91437 0.96744 0.89211 0.92273 0.85970 0.86583 0.90930 0.87552 0.86990 0.92000 0.88914 0.96530 0.92772 0.94460 0.96977 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 10.24 71.98 0.74 -3.60 16 2 C 0.12 3.01 6.66 86.38 0.57 3.59 16 3 N -0.62 -18.78 2.94 -817.53 -2.40 -21.18 16 4 C 0.11 2.31 7.35 86.83 0.64 2.95 16 5 C -0.12 -2.56 6.68 31.65 0.21 -2.35 16 6 C 0.04 1.45 2.18 44.91 0.10 1.55 16 7 H 0.05 2.02 6.77 -2.39 -0.02 2.01 16 8 N -0.52 -22.40 4.62 -876.25 -4.05 -26.45 16 9 C 0.04 1.26 8.50 127.69 1.09 2.34 16 10 C 0.21 11.65 2.03 44.17 0.09 11.74 16 11 H 0.01 0.40 5.90 -2.39 -0.01 0.39 16 12 C -0.15 -8.11 8.28 71.98 0.60 -7.51 16 13 C -0.51 -29.62 7.85 25.60 0.20 -29.42 16 14 H 0.07 3.61 6.79 -2.91 -0.02 3.59 16 15 C 0.00 0.16 5.30 84.65 0.45 0.61 16 16 N -0.92 -57.80 11.32 21.45 0.24 -57.55 16 17 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.51 21.54 6.80 87.85 0.60 22.13 16 22 O -0.58 -30.79 16.01 -3.02 -0.05 -30.84 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.71 7.94 -2.39 -0.02 1.69 16 27 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.11 2.14 6.10 -2.39 -0.01 2.12 16 32 H 0.06 2.46 6.35 -2.39 -0.02 2.44 16 33 H 0.09 2.45 6.30 -2.39 -0.02 2.43 16 34 H 0.02 0.59 6.67 -2.38 -0.02 0.57 16 35 H 0.05 3.29 6.07 -2.39 -0.01 3.28 16 36 H 0.04 1.86 6.54 -2.39 -0.02 1.84 16 37 H 0.01 0.60 6.66 -2.39 -0.02 0.58 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -78.22 294.99 2.08 -76.13 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.04 Total: 10.28 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.28 Total: 2.03 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -6.21 Total: -105.18 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.22 2.08 -76.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.949 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds