Wall clock time and date at job start Mon Mar 30 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47287 * 2 1 4 4 C 1.46765 * 124.34966 * 89.99347 * 3 2 1 5 5 C 1.54489 * 105.46922 * 162.96593 * 4 3 2 6 6 C 1.54621 * 101.76251 * 25.41634 * 5 4 3 7 7 H 1.09000 * 110.49080 * 94.01770 * 6 5 4 8 8 N 1.46503 * 110.48568 * 216.52022 * 6 5 4 9 9 C 1.36940 * 119.99827 * 60.00236 * 8 6 5 10 10 H 1.08001 * 119.99731 * 54.73603 * 9 8 6 11 11 C 1.38807 * 120.00225 * 234.73938 * 9 8 6 12 12 N 1.31616 * 119.99978 * 37.47043 * 11 9 8 13 13 Si 1.86798 * 120.00088 * 217.47123 * 11 9 8 14 14 H 1.48506 * 109.47152 * 59.99703 * 13 11 9 15 15 H 1.48500 * 109.47516 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47121 * 299.99797 * 13 11 9 17 17 C 1.46495 * 120.00520 * 239.72827 * 8 6 5 18 18 C 1.53001 * 109.47164 * 115.50290 * 17 8 6 19 19 C 1.52997 * 109.47464 * 235.50450 * 17 8 6 20 20 C 1.34413 * 124.34673 * 269.97480 * 3 2 1 21 21 O 1.21287 * 124.94313 * 0.42440 * 20 3 2 22 22 H 1.09000 * 109.47342 * 300.00321 * 1 2 3 23 23 H 1.08997 * 109.46909 * 60.00737 * 1 2 3 24 24 H 1.08999 * 109.47008 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47677 * 239.98982 * 2 1 3 26 26 H 1.09002 * 109.46799 * 119.99707 * 2 1 3 27 27 H 1.08989 * 110.24627 * 43.96576 * 4 3 2 28 28 H 1.09000 * 110.31731 * 281.99889 * 4 3 2 29 29 H 1.08995 * 110.96769 * 267.29624 * 5 4 3 30 30 H 1.08998 * 110.96282 * 143.53267 * 5 4 3 31 31 H 0.97003 * 120.00079 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.46912 * 355.49947 * 17 8 6 33 33 H 1.08991 * 109.47635 * 69.37944 * 18 17 8 34 34 H 1.09000 * 109.46767 * 189.38379 * 18 17 8 35 35 H 1.09003 * 109.47144 * 309.37652 * 18 17 8 36 36 H 1.09004 * 109.47223 * 54.40842 * 19 17 8 37 37 H 1.08994 * 109.47697 * 174.41267 * 19 17 8 38 38 H 1.09008 * 109.46751 * 294.40827 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1749 3.3439 0.7487 6 6 2.7703 3.4750 -0.7379 7 1 1.9772 4.2137 -0.8537 8 7 3.9307 3.8383 -1.5550 9 6 5.0237 3.0143 -1.5967 10 1 4.9069 1.9759 -1.8696 11 6 6.2815 3.5136 -1.2880 12 7 6.4191 4.4026 -0.3273 13 14 7.7790 2.9238 -2.2362 14 1 7.6099 3.2427 -3.6768 15 1 8.9928 3.6047 -1.7182 16 1 7.9247 1.4556 -2.0681 17 6 3.9196 5.0800 -2.3322 18 6 4.9995 6.0243 -1.8003 19 6 4.1981 4.7637 -3.8030 20 6 2.2716 2.0960 -1.1098 21 8 2.1222 1.6939 -2.2443 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5140 -0.8898 26 1 1.8933 -0.5138 0.8900 27 1 2.8319 1.5531 1.9385 28 1 1.3643 2.5312 1.6440 29 1 4.2335 3.1028 0.8451 30 1 2.9312 4.2515 1.3009 31 1 7.2981 4.7518 -0.1119 32 1 2.9435 5.5565 -2.2417 33 1 5.9839 5.6229 -2.0409 34 1 4.8842 7.0049 -2.2620 35 1 4.8997 6.1180 -0.7189 36 1 3.4881 4.0150 -4.1544 37 1 4.0921 5.6717 -4.3964 38 1 5.2128 4.3788 -3.9060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696581356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:45 Heat of formation + Delta-G solvation = -5.623247 kcal Electronic energy + Delta-G solvation = -18741.502137 eV Core-core repulsion = 16006.037036 eV Total energy + Delta-G solvation = -2735.465100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60058 -36.26576 -35.49117 -33.11367 -31.68391 -30.10015 -28.07054 -26.18355 -25.68452 -23.78848 -22.87799 -20.58812 -19.66610 -18.58358 -16.38610 -15.87478 -15.67713 -15.05335 -14.44708 -13.84335 -13.73144 -13.22169 -12.95913 -12.77714 -12.54273 -12.37501 -11.90862 -11.81805 -11.45763 -11.41264 -11.17028 -11.05385 -10.81005 -10.79780 -10.71945 -10.26889 -10.07670 -9.82394 -9.74704 -9.56514 -8.87763 -8.06851 -7.93842 -6.47469 -5.77549 -3.47882 3.35708 3.42214 3.47414 3.52777 3.70430 4.47282 5.07817 5.16329 5.29194 5.43813 5.48539 5.58811 5.63273 5.79500 5.87075 5.99745 6.15331 6.17766 6.20938 6.26121 6.35920 6.55705 6.59134 6.71786 6.78893 6.95859 7.18193 7.23977 7.26664 7.38695 7.53948 7.83953 7.87380 7.95082 8.69145 9.13016 9.19513 9.72703 10.49348 11.01000 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.008907 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.315456 B = 3142.806059 C = 3321.056579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.628 5.628 4 C 0.108 3.892 5 C -0.137 4.137 6 C 0.146 3.854 7 H 0.077 0.923 8 N -0.556 5.556 9 C -0.287 4.287 10 H 0.047 0.953 11 C 0.059 3.941 12 N -0.839 5.839 13 Si 0.864 3.136 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.180 3.820 18 C -0.141 4.141 19 C -0.147 4.147 20 C 0.514 3.486 21 O -0.536 6.536 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.255 0.745 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.007 0.993 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.030 0.970 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 -1.777 4.127 8.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.364 5.364 4 C -0.016 4.016 5 C -0.176 4.176 6 C 0.035 3.965 7 H 0.095 0.905 8 N -0.276 5.276 9 C -0.415 4.415 10 H 0.065 0.935 11 C -0.147 4.147 12 N -0.475 5.475 13 Si 0.691 3.309 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.205 1.205 17 C 0.074 3.926 18 C -0.200 4.200 19 C -0.206 4.206 20 C 0.301 3.699 21 O -0.411 6.411 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.026 0.974 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.541 -1.928 3.605 8.578 hybrid contribution 0.916 -0.365 -0.342 1.044 sum -6.624 -2.293 3.263 7.733 Atomic orbital electron populations 1.22150 0.96682 1.01482 1.02105 1.21170 0.93564 0.82890 1.02340 1.48322 1.67001 1.12917 1.08183 1.22034 0.98488 0.93900 0.87149 1.23059 1.02555 0.95542 0.96467 1.21081 0.92283 0.91675 0.91491 0.90506 1.43537 1.12703 1.22564 1.48820 1.18353 0.84429 0.93939 1.44825 0.93522 1.25237 0.98385 0.96905 0.94220 1.70416 1.23163 1.30848 1.23056 0.87048 0.82759 0.79083 0.81988 1.20363 1.21706 1.20477 1.20423 0.95460 0.86735 0.89944 1.22385 1.01145 0.94983 1.01508 1.22062 1.02339 0.98891 0.97312 1.22179 0.74550 0.89388 0.83747 1.90570 1.53035 1.75920 1.21611 0.92790 0.92451 0.92167 0.90695 0.91285 0.91852 0.92873 0.87155 0.91377 0.93463 0.94485 0.91828 0.97358 0.91603 0.93415 0.95066 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.12 1.85 6.65 -4.04 -0.03 1.83 16 3 N -0.63 -11.36 2.93 -172.41 -0.51 -11.86 16 4 C 0.11 1.69 7.35 -3.12 -0.02 1.67 16 5 C -0.14 -2.58 6.76 -25.10 -0.17 -2.75 16 6 C 0.15 3.12 3.48 -67.94 -0.24 2.88 16 7 H 0.08 1.52 7.61 -51.93 -0.40 1.13 16 8 N -0.56 -13.44 2.38 -158.16 -0.38 -13.82 16 9 C -0.29 -7.64 6.57 -15.06 -0.10 -7.74 16 10 H 0.05 1.39 7.83 -52.49 -0.41 0.98 16 11 C 0.06 1.54 3.47 -17.43 -0.06 1.47 16 12 N -0.84 -21.83 10.61 55.49 0.59 -21.24 16 13 Si 0.86 20.88 29.68 -169.99 -5.05 15.84 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.18 4.06 3.37 -67.93 -0.23 3.83 16 18 C -0.14 -3.18 7.65 37.16 0.28 -2.90 16 19 C -0.15 -3.22 8.98 37.16 0.33 -2.89 16 20 C 0.51 11.36 6.83 -10.86 -0.07 11.29 16 21 O -0.54 -13.72 17.59 5.55 0.10 -13.62 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.11 2.51 7.21 -51.93 -0.37 2.14 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.04 0.77 7.59 -51.93 -0.39 0.38 16 33 H 0.06 1.57 5.55 -51.93 -0.29 1.28 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.06 1.57 7.33 -51.93 -0.38 1.19 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 1.33 7.73 -51.92 -0.40 0.93 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -29.24 304.37 -6.99 -36.23 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.42 Total: -1.08 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 0.08 Total: 4.97 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.29 Total: -46.92 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.10 Total: -13.62 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.05 Total: 15.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.24 -6.99 -36.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.609 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds