Wall clock time and date at job start Mon Mar 30 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47287 * 2 1 4 4 C 1.46765 * 124.34966 * 89.99347 * 3 2 1 5 5 C 1.54489 * 105.46922 * 162.96593 * 4 3 2 6 6 C 1.54621 * 101.76251 * 25.41634 * 5 4 3 7 7 H 1.09000 * 110.49080 * 94.01770 * 6 5 4 8 8 N 1.46503 * 110.48568 * 216.52022 * 6 5 4 9 9 C 1.36940 * 119.99827 * 60.00236 * 8 6 5 10 10 H 1.08001 * 119.99731 * 54.73603 * 9 8 6 11 11 C 1.38807 * 120.00225 * 234.73938 * 9 8 6 12 12 N 1.31616 * 119.99978 * 37.47043 * 11 9 8 13 13 Si 1.86798 * 120.00088 * 217.47123 * 11 9 8 14 14 H 1.48506 * 109.47152 * 59.99703 * 13 11 9 15 15 H 1.48500 * 109.47516 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47121 * 299.99797 * 13 11 9 17 17 C 1.46495 * 120.00520 * 239.72827 * 8 6 5 18 18 C 1.53001 * 109.47164 * 115.50290 * 17 8 6 19 19 C 1.52997 * 109.47464 * 235.50450 * 17 8 6 20 20 C 1.34413 * 124.34673 * 269.97480 * 3 2 1 21 21 O 1.21287 * 124.94313 * 0.42440 * 20 3 2 22 22 H 1.09000 * 109.47342 * 300.00321 * 1 2 3 23 23 H 1.08997 * 109.46909 * 60.00737 * 1 2 3 24 24 H 1.08999 * 109.47008 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47677 * 239.98982 * 2 1 3 26 26 H 1.09002 * 109.46799 * 119.99707 * 2 1 3 27 27 H 1.08989 * 110.24627 * 43.96576 * 4 3 2 28 28 H 1.09000 * 110.31731 * 281.99889 * 4 3 2 29 29 H 1.08995 * 110.96769 * 267.29624 * 5 4 3 30 30 H 1.08998 * 110.96282 * 143.53267 * 5 4 3 31 31 H 0.97003 * 120.00079 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.46912 * 355.49947 * 17 8 6 33 33 H 1.08991 * 109.47635 * 69.37944 * 18 17 8 34 34 H 1.09000 * 109.46767 * 189.38379 * 18 17 8 35 35 H 1.09003 * 109.47144 * 309.37652 * 18 17 8 36 36 H 1.09004 * 109.47223 * 54.40842 * 19 17 8 37 37 H 1.08994 * 109.47697 * 174.41267 * 19 17 8 38 38 H 1.09008 * 109.46751 * 294.40827 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1749 3.3439 0.7487 6 6 2.7703 3.4750 -0.7379 7 1 1.9772 4.2137 -0.8537 8 7 3.9307 3.8383 -1.5550 9 6 5.0237 3.0143 -1.5967 10 1 4.9069 1.9759 -1.8696 11 6 6.2815 3.5136 -1.2880 12 7 6.4191 4.4026 -0.3273 13 14 7.7790 2.9238 -2.2362 14 1 7.6099 3.2427 -3.6768 15 1 8.9928 3.6047 -1.7182 16 1 7.9247 1.4556 -2.0681 17 6 3.9196 5.0800 -2.3322 18 6 4.9995 6.0243 -1.8003 19 6 4.1981 4.7637 -3.8030 20 6 2.2716 2.0960 -1.1098 21 8 2.1222 1.6939 -2.2443 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5140 -0.8898 26 1 1.8933 -0.5138 0.8900 27 1 2.8319 1.5531 1.9385 28 1 1.3643 2.5312 1.6440 29 1 4.2335 3.1028 0.8451 30 1 2.9312 4.2515 1.3009 31 1 7.2981 4.7518 -0.1119 32 1 2.9435 5.5565 -2.2417 33 1 5.9839 5.6229 -2.0409 34 1 4.8842 7.0049 -2.2620 35 1 4.8997 6.1180 -0.7189 36 1 3.4881 4.0150 -4.1544 37 1 4.0921 5.6717 -4.3964 38 1 5.2128 4.3788 -3.9060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696581356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:45 Heat of formation + Delta-G solvation = -23.074730 kcal Electronic energy + Delta-G solvation = -18742.258890 eV Core-core repulsion = 16006.037036 eV Total energy + Delta-G solvation = -2736.221853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18915 -38.06975 -37.14271 -34.53266 -33.65842 -31.69011 -29.55345 -27.90568 -27.45622 -25.57534 -24.17463 -22.13253 -21.51971 -20.14873 -18.20906 -17.48122 -17.28475 -16.70328 -16.40342 -15.44853 -15.20149 -14.84526 -14.45007 -14.30663 -14.22911 -14.03549 -13.52925 -13.40505 -13.04417 -12.94011 -12.83423 -12.75216 -12.62706 -12.56021 -12.15369 -11.95828 -11.78571 -11.64483 -11.50330 -11.37196 -10.61025 -9.93919 -9.50535 -8.44250 -7.71546 -5.50532 1.37848 1.43748 1.51438 1.83133 2.30838 2.49583 3.08214 3.61744 3.81950 4.05807 4.27839 4.31177 4.38677 4.46235 4.47132 4.54276 4.72272 4.75910 4.78488 4.85406 4.93015 5.00555 5.00742 5.20498 5.29147 5.32727 5.36915 5.41232 5.67617 5.76861 5.79833 5.90579 6.06261 6.34050 6.62042 7.25198 7.49292 7.80689 8.52508 8.97521 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.008907 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.315456 B = 3142.806059 C = 3321.056579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.115 3.885 3 N -0.624 5.624 4 C 0.113 3.887 5 C -0.127 4.127 6 C 0.135 3.865 7 H 0.094 0.906 8 N -0.568 5.568 9 C -0.289 4.289 10 H 0.005 0.995 11 C 0.041 3.959 12 N -0.843 5.843 13 Si 0.900 3.100 14 H -0.285 1.285 15 H -0.282 1.282 16 H -0.286 1.286 17 C 0.170 3.830 18 C -0.126 4.126 19 C -0.138 4.138 20 C 0.503 3.497 21 O -0.586 6.586 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.256 0.744 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.049 0.951 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -1.292 5.688 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.007 4.007 3 N -0.359 5.359 4 C -0.010 4.010 5 C -0.166 4.166 6 C 0.024 3.976 7 H 0.111 0.889 8 N -0.289 5.289 9 C -0.419 4.419 10 H 0.023 0.977 11 C -0.165 4.165 12 N -0.479 5.479 13 Si 0.727 3.273 14 H -0.211 1.211 15 H -0.207 1.207 16 H -0.212 1.212 17 C 0.065 3.935 18 C -0.185 4.185 19 C -0.197 4.197 20 C 0.290 3.710 21 O -0.466 6.466 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.667 -1.450 5.223 10.222 hybrid contribution 1.227 -0.543 -0.817 1.571 sum -7.440 -1.993 4.406 8.874 Atomic orbital electron populations 1.22052 0.94395 1.03130 1.01710 1.21439 0.95418 0.81178 1.02651 1.48464 1.65577 1.13940 1.07881 1.22196 0.99866 0.92653 0.86254 1.22853 1.00765 0.97974 0.95019 1.21319 0.91734 0.91871 0.92645 0.88851 1.43623 1.12818 1.22664 1.49788 1.17899 0.85955 0.92737 1.45299 0.97716 1.25443 0.99193 0.97321 0.94526 1.70426 1.23346 1.31053 1.23027 0.86502 0.81574 0.78334 0.80856 1.21130 1.20700 1.21206 1.20611 0.96584 0.86448 0.89896 1.22163 0.99609 0.96147 1.00576 1.21962 1.00136 0.99797 0.97758 1.22340 0.74473 0.90247 0.83941 1.90529 1.55452 1.76971 1.23645 0.90938 0.94935 0.89575 0.93255 0.88106 0.89855 0.88917 0.91147 0.89247 0.93382 0.92338 0.94358 0.94627 0.93151 0.95015 0.91782 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 10.24 71.98 0.74 -2.79 16 2 C 0.11 3.26 6.65 86.38 0.57 3.84 16 3 N -0.62 -21.71 2.93 -817.98 -2.40 -24.11 16 4 C 0.11 3.18 7.35 86.83 0.64 3.82 16 5 C -0.13 -4.59 6.76 31.65 0.21 -4.38 16 6 C 0.13 5.69 3.48 44.98 0.16 5.85 16 7 H 0.09 3.56 7.61 -2.39 -0.02 3.54 16 8 N -0.57 -27.69 2.38 -654.31 -1.56 -29.25 16 9 C -0.29 -15.85 6.57 84.03 0.55 -15.30 16 10 H 0.01 0.33 7.83 -2.91 -0.02 0.31 16 11 C 0.04 2.17 3.47 84.86 0.29 2.47 16 12 N -0.84 -43.85 10.61 21.65 0.23 -43.62 16 13 Si 0.90 43.43 29.68 68.60 2.04 45.46 16 14 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 15 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 16 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 17 C 0.17 7.54 3.37 44.99 0.15 7.69 16 18 C -0.13 -5.53 7.65 71.98 0.55 -4.98 16 19 C -0.14 -6.00 8.98 71.98 0.65 -5.35 16 20 C 0.50 22.36 6.83 87.90 0.60 22.96 16 21 O -0.59 -31.08 17.59 -3.05 -0.05 -31.14 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.65 7.93 -2.39 -0.02 1.63 16 26 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 3.18 7.21 -2.39 -0.02 3.16 16 30 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 32 H 0.06 2.33 7.59 -2.39 -0.02 2.31 16 33 H 0.04 1.85 5.55 -2.39 -0.01 1.84 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 2.34 7.33 -2.39 -0.02 2.32 16 36 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.03 1.45 7.73 -2.38 -0.02 1.43 16 Total: -1.00 -65.61 304.37 4.38 -61.23 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.01 Total: 7.60 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.12 Total: 13.81 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -3.73 Total: -96.97 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.05 Total: -31.14 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.04 Total: 45.46 kcal Total: -65.61 4.38 -61.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696581356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.159 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds