Wall clock time and date at job start Mon Mar 30 2020 03:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47746 * 2 1 4 4 C 1.50704 * 109.47139 * 119.99983 * 2 1 3 5 5 H 1.07997 * 120.00019 * 119.99104 * 4 2 1 6 6 C 1.37883 * 119.99652 * 300.00190 * 4 2 1 7 7 N 1.31506 * 120.00061 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99645 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47085 * 89.99782 * 8 6 4 10 10 H 1.48494 * 109.46803 * 209.99789 * 8 6 4 11 11 H 1.48504 * 109.46994 * 329.99354 * 8 6 4 12 12 N 1.46901 * 109.47194 * 239.99639 * 2 1 3 13 13 C 1.46892 * 110.99992 * 306.04977 * 12 2 1 14 14 C 1.46898 * 110.99716 * 70.00401 * 12 2 1 15 15 C 1.52997 * 109.47183 * 161.91007 * 14 12 2 16 16 C 1.53001 * 110.43223 * 303.51911 * 15 14 12 17 17 C 1.54624 * 110.49110 * 66.06317 * 15 14 12 18 18 C 1.54473 * 101.76616 * 143.61169 * 17 15 14 19 19 N 1.46763 * 105.55215 * 334.53764 * 18 17 15 20 20 C 1.34619 * 111.17931 * 17.05847 * 19 18 17 21 21 O 1.21284 * 124.91120 * 179.57561 * 20 19 18 22 22 H 1.09005 * 109.46824 * 300.00173 * 1 2 3 23 23 H 1.09001 * 109.46848 * 59.99739 * 1 2 3 24 24 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 25 25 H 0.97003 * 119.99772 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47447 * 195.10964 * 13 12 2 27 27 H 1.09001 * 109.47626 * 315.11412 * 13 12 2 28 28 H 1.09000 * 109.47132 * 75.11606 * 13 12 2 29 29 H 1.09001 * 109.47507 * 41.90476 * 14 12 2 30 30 H 1.09007 * 109.47290 * 281.90828 * 14 12 2 31 31 H 1.08999 * 109.47335 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47326 * 300.00501 * 16 15 14 33 33 H 1.08998 * 109.47378 * 60.00691 * 16 15 14 34 34 H 1.08997 * 110.96920 * 25.48863 * 17 15 14 35 35 H 1.09004 * 111.00123 * 261.74447 * 17 15 14 36 36 H 1.08997 * 110.25048 * 93.58692 * 18 17 15 37 37 H 1.09006 * 110.24202 * 215.49436 * 18 17 15 38 38 H 0.96995 * 124.35053 * 197.08383 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4856 -2.5663 3.7120 12 7 2.0197 -0.6926 -1.1994 13 6 1.4343 -2.0354 -1.3077 14 6 1.7530 0.0972 -2.4090 15 6 2.6424 -0.4012 -3.5498 16 6 4.1163 -0.3394 -3.1441 17 6 2.2515 -1.8424 -3.9509 18 6 2.4576 -1.8104 -5.4815 19 7 2.2984 -0.4043 -5.8706 20 6 2.4040 0.4104 -4.8041 21 8 2.3198 1.6197 -4.8434 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7095 1.1618 3.4844 26 1 1.9997 -2.6209 -2.0327 27 1 1.4709 -2.5273 -0.3357 28 1 0.3978 -1.9546 -1.6352 29 1 1.9687 1.1473 -2.2122 30 1 0.7056 -0.0119 -2.6906 31 1 4.7350 -0.6969 -3.9672 32 1 4.3854 0.6902 -2.9084 33 1 4.2787 -0.9670 -2.2679 34 1 1.2105 -2.0479 -3.7016 35 1 2.9136 -2.5713 -3.4833 36 1 3.4580 -2.1610 -5.7348 37 1 1.7062 -2.4260 -5.9762 38 1 2.1377 -0.1024 -6.7782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698270493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:43 Heat of formation + Delta-G solvation = -26.753908 kcal Electronic energy + Delta-G solvation = -18344.312163 eV Core-core repulsion = 15607.930768 eV Total energy + Delta-G solvation = -2736.381395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59874 -37.35580 -36.10426 -33.52972 -31.94551 -28.95459 -28.49817 -26.62714 -25.32514 -25.11280 -22.83039 -21.69470 -19.46891 -18.59931 -17.13974 -16.14319 -15.89645 -15.21876 -14.69230 -14.44962 -14.06331 -13.75329 -13.48347 -13.30969 -12.60879 -12.56045 -12.28330 -12.13678 -11.77532 -11.49462 -11.06004 -10.99716 -10.79279 -10.60826 -10.56357 -10.45071 -10.26798 -10.00805 -9.78617 -9.42018 -9.07973 -8.84944 -8.35415 -7.15884 -5.97898 -4.01638 2.76102 3.32874 3.38877 3.39583 3.42076 4.38617 4.49062 4.56433 4.83224 5.08234 5.26517 5.33934 5.34740 5.50256 5.57674 5.91420 5.95995 6.11113 6.12057 6.20207 6.29925 6.38420 6.48145 6.68719 6.70299 6.85461 6.88744 6.91313 7.03189 7.17137 7.49092 7.73248 7.86227 8.16680 8.37502 8.40992 8.61520 9.04329 9.63099 11.09242 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.006120 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.234191 B = 4574.430653 C = 4740.860487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.527 5.527 13 C 0.021 3.979 14 C 0.078 3.922 15 C -0.084 4.084 16 C -0.117 4.117 17 C -0.126 4.126 18 C 0.099 3.901 19 N -0.739 5.739 20 C 0.527 3.473 21 O -0.530 6.530 22 H 0.087 0.913 23 H 0.005 0.995 24 H 0.029 0.971 25 H 0.260 0.740 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.011 0.989 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -7.185 -13.963 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.250 5.250 13 C -0.127 4.127 14 C -0.052 4.052 15 C -0.088 4.088 16 C -0.174 4.174 17 C -0.164 4.164 18 C -0.025 4.025 19 N -0.395 5.395 20 C 0.313 3.687 21 O -0.406 6.406 22 H 0.106 0.894 23 H 0.024 0.976 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.780 -6.516 -13.655 15.383 hybrid contribution -0.808 -0.238 0.289 0.890 sum 1.973 -6.754 -13.366 15.105 Atomic orbital electron populations 1.22407 1.00841 0.99266 1.00478 1.19346 0.89737 0.94551 0.85914 0.94328 1.21093 1.30456 1.12443 0.89580 0.91909 1.24937 0.95277 0.95168 0.98999 1.69891 1.37054 1.23078 1.23351 0.86528 0.78496 0.79928 0.82591 1.20732 1.21464 1.19994 1.62208 1.58580 1.02311 1.01911 1.22635 0.95559 0.92284 1.02260 1.21846 0.94820 0.98565 0.89960 1.21353 0.99590 0.94445 0.93405 1.21538 0.90902 1.03450 1.01549 1.23055 1.03372 0.97007 0.92923 1.22136 1.01458 0.82124 0.96829 1.46271 1.74665 1.08256 1.10273 1.21075 0.74162 0.87033 0.86425 1.90716 1.50327 1.13255 1.86293 0.89428 0.97580 0.95155 0.93038 0.92636 0.90778 0.97032 0.90603 0.95530 0.93891 0.92208 0.89336 0.89828 0.88444 0.91371 0.90742 0.75735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.28 37.16 0.31 -3.84 16 2 C 0.21 5.24 2.29 -68.86 -0.16 5.08 16 3 H 0.04 1.08 7.84 -51.93 -0.41 0.67 16 4 C -0.50 -13.33 7.75 -34.44 -0.27 -13.60 16 5 H 0.06 1.67 7.24 -52.49 -0.38 1.29 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.53 -10.76 3.81 -236.29 -0.90 -11.66 16 13 C 0.02 0.38 7.05 60.06 0.42 0.80 16 14 C 0.08 1.45 3.45 -3.83 -0.01 1.44 16 15 C -0.08 -1.26 0.70 -154.52 -0.11 -1.37 16 16 C -0.12 -1.71 8.31 37.16 0.31 -1.40 16 17 C -0.13 -1.44 4.17 -25.10 -0.10 -1.54 16 18 C 0.10 0.88 7.77 -3.13 -0.02 0.86 16 19 N -0.74 -8.40 6.26 -59.15 -0.37 -8.77 16 20 C 0.53 8.30 7.19 -10.77 -0.08 8.22 16 21 O -0.53 -10.49 17.86 5.55 0.10 -10.39 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 23 H 0.01 0.12 7.12 -51.93 -0.37 -0.25 16 24 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.06 0.81 4.66 -51.93 -0.24 0.57 16 27 H 0.07 1.48 6.59 -51.93 -0.34 1.14 16 28 H 0.01 0.20 6.74 -51.93 -0.35 -0.15 16 29 H 0.08 1.59 7.75 -51.93 -0.40 1.19 16 30 H 0.03 0.51 7.12 -51.93 -0.37 0.14 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 34 H 0.08 1.00 6.57 -51.93 -0.34 0.65 16 35 H 0.10 1.02 6.72 -51.93 -0.35 0.67 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 3.79 8.96 -40.82 -0.37 3.43 16 LS Contribution 290.88 15.07 4.38 4.38 Total: -1.00 -30.60 290.88 -6.79 -37.39 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.80 Total: 1.69 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 0.19 Total: -3.89 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.64 Total: -45.33 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.10 Total: -10.39 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.60 -6.79 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698270493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.632 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds