Wall clock time and date at job start Mon Mar 30 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47746 * 2 1 4 4 C 1.50704 * 109.47139 * 119.99983 * 2 1 3 5 5 H 1.07997 * 120.00019 * 119.99104 * 4 2 1 6 6 C 1.37883 * 119.99652 * 300.00190 * 4 2 1 7 7 N 1.31506 * 120.00061 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99645 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47085 * 89.99782 * 8 6 4 10 10 H 1.48494 * 109.46803 * 209.99789 * 8 6 4 11 11 H 1.48504 * 109.46994 * 329.99354 * 8 6 4 12 12 N 1.46901 * 109.47194 * 239.99639 * 2 1 3 13 13 C 1.46892 * 110.99992 * 306.04977 * 12 2 1 14 14 C 1.46898 * 110.99716 * 70.00401 * 12 2 1 15 15 C 1.52997 * 109.47183 * 161.91007 * 14 12 2 16 16 C 1.53001 * 110.43223 * 303.51911 * 15 14 12 17 17 C 1.54624 * 110.49110 * 66.06317 * 15 14 12 18 18 C 1.54473 * 101.76616 * 143.61169 * 17 15 14 19 19 N 1.46763 * 105.55215 * 334.53764 * 18 17 15 20 20 C 1.34619 * 111.17931 * 17.05847 * 19 18 17 21 21 O 1.21284 * 124.91120 * 179.57561 * 20 19 18 22 22 H 1.09005 * 109.46824 * 300.00173 * 1 2 3 23 23 H 1.09001 * 109.46848 * 59.99739 * 1 2 3 24 24 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 25 25 H 0.97003 * 119.99772 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47447 * 195.10964 * 13 12 2 27 27 H 1.09001 * 109.47626 * 315.11412 * 13 12 2 28 28 H 1.09000 * 109.47132 * 75.11606 * 13 12 2 29 29 H 1.09001 * 109.47507 * 41.90476 * 14 12 2 30 30 H 1.09007 * 109.47290 * 281.90828 * 14 12 2 31 31 H 1.08999 * 109.47335 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47326 * 300.00501 * 16 15 14 33 33 H 1.08998 * 109.47378 * 60.00691 * 16 15 14 34 34 H 1.08997 * 110.96920 * 25.48863 * 17 15 14 35 35 H 1.09004 * 111.00123 * 261.74447 * 17 15 14 36 36 H 1.08997 * 110.25048 * 93.58692 * 18 17 15 37 37 H 1.09006 * 110.24202 * 215.49436 * 18 17 15 38 38 H 0.96995 * 124.35053 * 197.08383 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4856 -2.5663 3.7120 12 7 2.0197 -0.6926 -1.1994 13 6 1.4343 -2.0354 -1.3077 14 6 1.7530 0.0972 -2.4090 15 6 2.6424 -0.4012 -3.5498 16 6 4.1163 -0.3394 -3.1441 17 6 2.2515 -1.8424 -3.9509 18 6 2.4576 -1.8104 -5.4815 19 7 2.2984 -0.4043 -5.8706 20 6 2.4040 0.4104 -4.8041 21 8 2.3198 1.6197 -4.8434 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7095 1.1618 3.4844 26 1 1.9997 -2.6209 -2.0327 27 1 1.4709 -2.5273 -0.3357 28 1 0.3978 -1.9546 -1.6352 29 1 1.9687 1.1473 -2.2122 30 1 0.7056 -0.0119 -2.6906 31 1 4.7350 -0.6969 -3.9672 32 1 4.3854 0.6902 -2.9084 33 1 4.2787 -0.9670 -2.2679 34 1 1.2105 -2.0479 -3.7016 35 1 2.9136 -2.5713 -3.4833 36 1 3.4580 -2.1610 -5.7348 37 1 1.7062 -2.4260 -5.9762 38 1 2.1377 -0.1024 -6.7782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698270493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:42 Heat of formation + Delta-G solvation = -49.692199 kcal Electronic energy + Delta-G solvation = -18345.306842 eV Core-core repulsion = 15607.930768 eV Total energy + Delta-G solvation = -2737.376074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.76416 -38.96709 -37.37552 -35.17214 -33.58992 -30.37210 -29.96003 -28.06476 -27.19766 -26.52065 -24.40415 -22.68147 -21.23380 -19.89526 -18.28921 -18.12227 -17.09930 -16.80021 -16.11891 -15.92449 -15.59234 -15.07289 -14.91977 -14.69259 -14.22634 -13.94480 -13.62575 -13.36055 -13.25455 -13.00022 -12.85553 -12.64788 -12.52712 -12.27940 -12.18246 -11.99546 -11.90367 -11.61479 -11.36343 -10.92260 -10.66431 -10.46828 -10.02366 -8.84764 -8.07441 -6.18577 1.45781 1.46604 1.53826 1.56851 2.41035 2.47806 3.21960 3.25564 3.53529 3.64209 3.99234 4.12262 4.20508 4.50583 4.62304 4.64230 4.73018 4.79679 4.85557 4.87336 4.88312 4.94277 5.01291 5.15709 5.21868 5.23627 5.31624 5.48184 5.54929 5.71055 5.80037 5.90389 6.03732 6.23464 6.52206 6.72828 6.95881 7.28057 7.50730 8.99246 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.006120 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.234191 B = 4574.430653 C = 4740.860487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H -0.006 1.006 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.006 3.994 7 N -0.926 5.926 8 Si 0.963 3.037 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.526 5.526 13 C 0.024 3.976 14 C 0.084 3.916 15 C -0.084 4.084 16 C -0.111 4.111 17 C -0.124 4.124 18 C 0.102 3.898 19 N -0.721 5.721 20 C 0.519 3.481 21 O -0.584 6.584 22 H 0.058 0.942 23 H 0.013 0.987 24 H 0.039 0.961 25 H 0.259 0.741 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.015 0.985 29 H 0.037 0.963 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -10.247 -15.492 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.012 0.988 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.192 4.192 7 N -0.567 5.567 8 Si 0.788 3.212 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.249 5.249 13 C -0.124 4.124 14 C -0.046 4.046 15 C -0.088 4.088 16 C -0.169 4.169 17 C -0.161 4.161 18 C -0.021 4.021 19 N -0.375 5.375 20 C 0.305 3.695 21 O -0.464 6.464 22 H 0.077 0.923 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.478 -9.639 -15.237 18.362 hybrid contribution -1.031 0.719 0.692 1.435 sum 2.447 -8.920 -14.544 17.236 Atomic orbital electron populations 1.22208 1.00549 0.99373 0.99407 1.19096 0.89842 0.92636 0.87799 0.98772 1.21366 1.30286 1.12426 0.90413 0.91690 1.25769 0.95473 0.95846 1.02118 1.70045 1.38217 1.24507 1.23903 0.85482 0.77699 0.79291 0.78685 1.20542 1.21387 1.18663 1.62135 1.58612 1.03226 1.00960 1.22719 0.96458 0.90765 1.02461 1.21745 0.95549 0.96595 0.90679 1.21282 0.98823 0.97015 0.91699 1.21481 0.91247 1.01752 1.02426 1.23082 1.03676 0.94209 0.95184 1.22393 1.04301 0.80617 0.94805 1.46234 1.72405 1.08984 1.09903 1.21199 0.74062 0.86546 0.87708 1.90689 1.53024 1.15581 1.87130 0.92271 0.96787 0.94220 0.93151 0.88360 0.92708 0.96697 0.94421 0.96048 0.90727 0.94944 0.90051 0.89936 0.86542 0.88593 0.87386 0.74307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.80 8.28 71.98 0.60 -7.20 16 2 C 0.21 11.01 2.29 44.17 0.10 11.11 16 3 H -0.01 -0.34 7.84 -2.39 -0.02 -0.36 16 4 C -0.51 -27.53 7.75 25.60 0.20 -27.33 16 5 H 0.06 3.44 7.24 -2.91 -0.02 3.42 16 6 C 0.01 0.32 5.30 84.66 0.45 0.77 16 7 N -0.93 -54.40 11.32 21.45 0.24 -54.16 16 8 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 12 N -0.53 -21.62 3.81 -901.48 -3.43 -25.05 16 13 C 0.02 0.80 7.05 127.69 0.90 1.70 16 14 C 0.08 3.20 3.45 86.30 0.30 3.50 16 15 C -0.08 -2.42 0.70 -52.19 -0.04 -2.46 16 16 C -0.11 -3.14 8.31 71.98 0.60 -2.54 16 17 C -0.12 -2.33 4.17 31.65 0.13 -2.20 16 18 C 0.10 1.28 7.77 86.83 0.68 1.95 16 19 N -0.72 -14.07 6.26 -459.54 -2.87 -16.95 16 20 C 0.52 15.83 7.19 87.87 0.63 16.46 16 21 O -0.58 -23.71 17.86 -3.04 -0.05 -23.77 16 22 H 0.06 3.30 6.07 -2.38 -0.01 3.29 16 23 H 0.01 0.63 7.12 -2.39 -0.02 0.61 16 24 H 0.04 1.85 6.67 -2.39 -0.02 1.84 16 25 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.10 2.51 4.66 -2.39 -0.01 2.50 16 27 H 0.05 2.10 6.59 -2.39 -0.02 2.09 16 28 H 0.01 0.49 6.74 -2.39 -0.02 0.48 16 29 H 0.04 1.70 7.75 -2.39 -0.02 1.68 16 30 H 0.02 0.83 7.12 -2.38 -0.02 0.81 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 2.40 7.58 -2.39 -0.02 2.38 16 34 H 0.08 1.62 6.57 -2.39 -0.02 1.61 16 35 H 0.12 1.80 6.72 -2.38 -0.02 1.78 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.42 6.48 8.96 -92.71 -0.83 5.65 16 Total: -1.00 -70.06 290.88 0.68 -69.38 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.23 Total: 11.19 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.54 Total: -6.23 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -6.06 Total: -96.15 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.06 0.68 -69.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698270493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.690 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds