Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46903 * 2 1 4 4 C 1.50700 * 109.47039 * 240.00089 * 2 1 3 5 5 H 1.07997 * 120.00193 * 245.53669 * 4 2 1 6 6 C 1.37883 * 119.99769 * 65.53953 * 4 2 1 7 7 N 1.31511 * 120.00247 * 5.30040 * 6 4 2 8 8 Si 1.86802 * 119.99548 * 185.29983 * 6 4 2 9 9 H 1.48499 * 109.46978 * 95.00231 * 8 6 4 10 10 H 1.48500 * 109.46771 * 214.99841 * 8 6 4 11 11 H 1.48494 * 109.47272 * 334.99893 * 8 6 4 12 12 N 1.46896 * 109.47253 * 120.00092 * 2 1 3 13 13 C 1.46897 * 111.00315 * 58.95469 * 12 2 1 14 14 C 1.46910 * 110.99938 * 295.00003 * 12 2 1 15 15 C 1.52999 * 109.46855 * 209.00979 * 14 12 2 16 16 C 1.53002 * 110.54032 * 292.13179 * 15 14 12 17 17 C 1.54627 * 110.48424 * 169.52195 * 15 14 12 18 18 C 1.54479 * 101.76570 * 216.52444 * 17 15 14 19 19 N 1.46767 * 105.47214 * 25.41300 * 18 17 15 20 20 C 1.34420 * 111.30217 * 342.98515 * 19 18 17 21 21 O 1.21279 * 124.94508 * 180.38700 * 20 19 18 22 22 H 1.09003 * 109.46864 * 184.72817 * 1 2 3 23 23 H 1.08994 * 109.46921 * 304.72236 * 1 2 3 24 24 H 1.08998 * 109.47133 * 64.72516 * 1 2 3 25 25 H 0.96997 * 119.99594 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.46927 * 288.75558 * 13 12 2 27 27 H 1.09005 * 109.46835 * 48.74854 * 13 12 2 28 28 H 1.08998 * 109.47221 * 168.75342 * 13 12 2 29 29 H 1.08997 * 109.46647 * 89.00795 * 14 12 2 30 30 H 1.08998 * 109.46824 * 329.00684 * 14 12 2 31 31 H 1.09001 * 109.47331 * 193.53559 * 16 15 14 32 32 H 1.09006 * 109.47117 * 313.53199 * 16 15 14 33 33 H 1.09001 * 109.47121 * 73.53204 * 16 15 14 34 34 H 1.09005 * 110.96792 * 334.63497 * 17 15 14 35 35 H 1.09000 * 110.97568 * 98.36625 * 17 15 14 36 36 H 1.09000 * 110.24332 * 266.41479 * 18 17 15 37 37 H 1.08995 * 110.25303 * 144.41308 * 18 17 15 38 38 H 0.96995 * 124.34990 * 163.25560 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5775 -1.6377 -1.1340 6 6 1.7960 -0.1764 -2.4795 7 7 1.2248 1.0027 -2.5933 8 14 2.2871 -1.1280 -4.0102 9 1 1.1203 -1.8994 -4.5090 10 1 2.7382 -0.1789 -5.0595 11 1 3.3930 -2.0619 -3.6789 12 7 2.0197 -0.6925 1.1994 13 6 1.5285 -2.0761 1.2460 14 6 1.6488 0.0392 2.4181 15 6 2.6905 -0.2233 3.5075 16 6 2.6309 -1.6815 3.9670 17 6 2.4734 0.7307 4.7049 18 6 3.9260 1.0250 5.1405 19 7 4.7440 0.8211 3.9391 20 6 4.0769 0.1181 3.0076 21 8 4.5216 -0.1964 1.9240 22 1 -0.3633 -1.0242 0.0847 23 1 -0.3633 0.5853 0.8446 24 1 -0.3633 0.4388 -0.9293 25 1 1.0589 1.3784 -3.4720 26 1 0.4605 -2.0753 1.4641 27 1 1.7021 -2.5559 0.2827 28 1 2.0582 -2.6237 2.0255 29 1 0.6710 -0.2988 2.7612 30 1 1.6092 1.1070 2.2029 31 1 3.1967 -1.7944 4.8918 32 1 1.5929 -1.9661 4.1392 33 1 3.0606 -2.3228 3.1975 34 1 1.9683 1.6437 4.3896 35 1 1.9191 0.2360 5.5024 36 1 4.2314 0.3342 5.9264 37 1 4.0148 2.0546 5.4869 38 1 5.6510 1.1480 3.8325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698270496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = -19.710902 kcal Electronic energy + Delta-G solvation = -18531.650995 eV Core-core repulsion = 15795.575008 eV Total energy + Delta-G solvation = -2736.075987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.29855 -36.99491 -35.85285 -33.41500 -31.88047 -28.92796 -27.97988 -27.32415 -25.08373 -24.37845 -22.96363 -21.61105 -19.39962 -18.37395 -16.86785 -16.06225 -15.85289 -15.02969 -14.69128 -14.11573 -13.84593 -13.54846 -13.42501 -12.88827 -12.60819 -12.32811 -12.23052 -12.10373 -11.83211 -11.49227 -11.18761 -10.93834 -10.76020 -10.60952 -10.55999 -10.40292 -10.28659 -9.89011 -9.49479 -9.00328 -8.74918 -8.72347 -8.24223 -6.88658 -5.89415 -3.88257 3.25730 3.39483 3.45938 3.51992 3.69109 4.49330 4.60494 4.62919 4.85641 5.18002 5.35119 5.41412 5.45397 5.47945 5.66322 5.75765 5.91824 6.00283 6.08989 6.13616 6.27284 6.30804 6.46069 6.60024 6.74693 6.87383 7.00057 7.19281 7.23034 7.40773 7.58064 7.74406 7.98864 8.28694 8.53945 8.78023 8.88983 9.17734 9.74529 11.20463 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.006946 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.399430 B = 4030.338884 C = 4193.155015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.214 3.786 3 H 0.041 0.959 4 C -0.489 4.489 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.893 3.107 9 H -0.284 1.284 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.513 5.513 13 C 0.025 3.975 14 C 0.076 3.924 15 C -0.088 4.088 16 C -0.130 4.130 17 C -0.130 4.130 18 C 0.108 3.892 19 N -0.751 5.751 20 C 0.524 3.476 21 O -0.473 6.473 22 H 0.030 0.970 23 H 0.008 0.992 24 H 0.073 0.927 25 H 0.258 0.742 26 H 0.008 0.992 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -0.816 16.933 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.107 3.893 3 H 0.059 0.941 4 C -0.528 4.528 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.721 3.279 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.235 5.235 13 C -0.124 4.124 14 C -0.054 4.054 15 C -0.093 4.093 16 C -0.187 4.187 17 C -0.168 4.168 18 C -0.017 4.017 19 N -0.410 5.410 20 C 0.308 3.692 21 O -0.342 6.342 22 H 0.049 0.951 23 H 0.027 0.973 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.115 -0.940 16.129 16.294 hybrid contribution -0.367 -0.084 -0.752 0.841 sum 1.748 -1.024 15.377 15.510 Atomic orbital electron populations 1.22403 1.01502 0.98413 1.00322 1.19312 0.88802 0.94862 0.86300 0.94119 1.21137 1.33868 1.08012 0.89758 0.91892 1.24920 0.95692 0.94879 0.98926 1.69953 1.44379 1.16098 1.23362 0.86560 0.78609 0.79804 0.82933 1.21009 1.21424 1.19822 1.62193 1.58856 1.01299 1.01200 1.22574 0.95656 0.91839 1.02294 1.21932 0.93486 0.98942 0.91044 1.21419 0.95398 0.96633 0.95814 1.21871 1.01971 0.94125 1.00745 1.22744 0.95870 1.00203 0.97965 1.21883 0.91052 1.00977 0.87800 1.46326 1.17650 1.59315 1.17739 1.20594 0.87390 0.77432 0.83792 1.90856 1.71753 1.51885 1.19751 0.95095 0.97322 0.90853 0.93251 0.97329 0.90794 0.93017 0.94690 0.91837 0.93250 0.92013 0.90484 0.90090 0.89654 0.91935 0.91079 0.75969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.52 37.16 0.32 -3.79 16 2 C 0.21 5.65 2.12 -68.86 -0.15 5.50 16 3 H 0.04 1.22 7.90 -51.93 -0.41 0.81 16 4 C -0.49 -14.18 7.84 -34.44 -0.27 -14.45 16 5 H 0.06 1.86 6.62 -52.49 -0.35 1.51 16 6 C 0.06 1.63 5.23 -17.82 -0.09 1.54 16 7 N -0.90 -26.87 11.96 55.43 0.66 -26.21 16 8 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 9 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 12 N -0.51 -11.58 3.06 -236.28 -0.72 -12.31 16 13 C 0.02 0.50 8.20 60.06 0.49 1.00 16 14 C 0.08 1.39 3.22 -3.82 -0.01 1.38 16 15 C -0.09 -1.32 0.71 -154.52 -0.11 -1.43 16 16 C -0.13 -1.73 7.17 37.16 0.27 -1.46 16 17 C -0.13 -1.37 6.18 -25.10 -0.16 -1.53 16 18 C 0.11 1.02 7.78 -3.12 -0.02 0.99 16 19 N -0.75 -9.83 6.24 -59.20 -0.37 -10.20 16 20 C 0.52 9.31 7.15 -10.86 -0.08 9.23 16 21 O -0.47 -11.05 16.55 5.56 0.09 -10.96 16 22 H 0.03 0.72 6.39 -51.93 -0.33 0.39 16 23 H 0.01 0.17 7.47 -51.93 -0.39 -0.21 16 24 H 0.07 1.99 6.64 -51.93 -0.34 1.64 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.01 0.16 6.57 -51.93 -0.34 -0.18 16 27 H 0.07 1.66 6.15 -51.93 -0.32 1.34 16 28 H 0.05 0.92 4.64 -51.93 -0.24 0.68 16 29 H 0.04 0.60 7.57 -51.93 -0.39 0.21 16 30 H 0.06 1.23 7.49 -51.93 -0.39 0.85 16 31 H 0.05 0.54 8.07 -51.93 -0.42 0.13 16 32 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 33 H 0.08 1.21 5.92 -51.93 -0.31 0.90 16 34 H 0.08 0.86 7.80 -51.93 -0.40 0.45 16 35 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 4.66 8.96 -40.82 -0.37 4.29 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -33.54 291.54 -6.59 -40.13 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.81 Total: 0.72 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 0.19 Total: -3.02 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.43 Total: -48.72 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.54 -6.59 -40.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698270496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.415 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds