Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46903 * 2 1 4 4 C 1.50700 * 109.47039 * 240.00089 * 2 1 3 5 5 H 1.07997 * 120.00193 * 245.53669 * 4 2 1 6 6 C 1.37883 * 119.99769 * 65.53953 * 4 2 1 7 7 N 1.31511 * 120.00247 * 5.30040 * 6 4 2 8 8 Si 1.86802 * 119.99548 * 185.29983 * 6 4 2 9 9 H 1.48499 * 109.46978 * 95.00231 * 8 6 4 10 10 H 1.48500 * 109.46771 * 214.99841 * 8 6 4 11 11 H 1.48494 * 109.47272 * 334.99893 * 8 6 4 12 12 N 1.46896 * 109.47253 * 120.00092 * 2 1 3 13 13 C 1.46897 * 111.00315 * 58.95469 * 12 2 1 14 14 C 1.46910 * 110.99938 * 295.00003 * 12 2 1 15 15 C 1.52999 * 109.46855 * 209.00979 * 14 12 2 16 16 C 1.53002 * 110.54032 * 292.13179 * 15 14 12 17 17 C 1.54627 * 110.48424 * 169.52195 * 15 14 12 18 18 C 1.54479 * 101.76570 * 216.52444 * 17 15 14 19 19 N 1.46767 * 105.47214 * 25.41300 * 18 17 15 20 20 C 1.34420 * 111.30217 * 342.98515 * 19 18 17 21 21 O 1.21279 * 124.94508 * 180.38700 * 20 19 18 22 22 H 1.09003 * 109.46864 * 184.72817 * 1 2 3 23 23 H 1.08994 * 109.46921 * 304.72236 * 1 2 3 24 24 H 1.08998 * 109.47133 * 64.72516 * 1 2 3 25 25 H 0.96997 * 119.99594 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.46927 * 288.75558 * 13 12 2 27 27 H 1.09005 * 109.46835 * 48.74854 * 13 12 2 28 28 H 1.08998 * 109.47221 * 168.75342 * 13 12 2 29 29 H 1.08997 * 109.46647 * 89.00795 * 14 12 2 30 30 H 1.08998 * 109.46824 * 329.00684 * 14 12 2 31 31 H 1.09001 * 109.47331 * 193.53559 * 16 15 14 32 32 H 1.09006 * 109.47117 * 313.53199 * 16 15 14 33 33 H 1.09001 * 109.47121 * 73.53204 * 16 15 14 34 34 H 1.09005 * 110.96792 * 334.63497 * 17 15 14 35 35 H 1.09000 * 110.97568 * 98.36625 * 17 15 14 36 36 H 1.09000 * 110.24332 * 266.41479 * 18 17 15 37 37 H 1.08995 * 110.25303 * 144.41308 * 18 17 15 38 38 H 0.96995 * 124.34990 * 163.25560 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5775 -1.6377 -1.1340 6 6 1.7960 -0.1764 -2.4795 7 7 1.2248 1.0027 -2.5933 8 14 2.2871 -1.1280 -4.0102 9 1 1.1203 -1.8994 -4.5090 10 1 2.7382 -0.1789 -5.0595 11 1 3.3930 -2.0619 -3.6789 12 7 2.0197 -0.6925 1.1994 13 6 1.5285 -2.0761 1.2460 14 6 1.6488 0.0392 2.4181 15 6 2.6905 -0.2233 3.5075 16 6 2.6309 -1.6815 3.9670 17 6 2.4734 0.7307 4.7049 18 6 3.9260 1.0250 5.1405 19 7 4.7440 0.8211 3.9391 20 6 4.0769 0.1181 3.0076 21 8 4.5216 -0.1964 1.9240 22 1 -0.3633 -1.0242 0.0847 23 1 -0.3633 0.5853 0.8446 24 1 -0.3633 0.4388 -0.9293 25 1 1.0589 1.3784 -3.4720 26 1 0.4605 -2.0753 1.4641 27 1 1.7021 -2.5559 0.2827 28 1 2.0582 -2.6237 2.0255 29 1 0.6710 -0.2988 2.7612 30 1 1.6092 1.1070 2.2029 31 1 3.1967 -1.7944 4.8918 32 1 1.5929 -1.9661 4.1392 33 1 3.0606 -2.3228 3.1975 34 1 1.9683 1.6437 4.3896 35 1 1.9191 0.2360 5.5024 36 1 4.2314 0.3342 5.9264 37 1 4.0148 2.0546 5.4869 38 1 5.6510 1.1480 3.8325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698270496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = -45.273817 kcal Electronic energy + Delta-G solvation = -18532.759486 eV Core-core repulsion = 15795.575008 eV Total energy + Delta-G solvation = -2737.184478 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51236 -38.72488 -37.19367 -35.12257 -33.59279 -30.56344 -29.23948 -28.75754 -27.20848 -25.67108 -24.63742 -22.60164 -21.24209 -19.70872 -18.22253 -18.01619 -16.98590 -16.93400 -16.07907 -15.85468 -15.29263 -14.98430 -14.72610 -14.50728 -14.07163 -13.90093 -13.60371 -13.29458 -13.17027 -12.95197 -12.89638 -12.66027 -12.51765 -12.41157 -12.18970 -12.12598 -11.91501 -11.57362 -11.26484 -10.81533 -10.49049 -10.34726 -9.83526 -8.59705 -8.12246 -6.18630 1.37755 1.39266 1.51050 1.93005 2.42983 2.66158 3.17762 3.30767 3.67733 3.80544 4.01005 4.26122 4.36032 4.46923 4.59990 4.68749 4.74212 4.79884 4.82427 4.85148 4.88688 4.92483 5.01683 5.15192 5.17021 5.21782 5.26302 5.49786 5.54664 5.71919 5.75503 6.17531 6.24061 6.26932 6.61014 6.88467 6.96502 7.48889 7.63463 8.96922 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.006946 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.399430 B = 4030.338884 C = 4193.155015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.221 3.779 3 H -0.007 1.007 4 C -0.508 4.508 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.531 5.531 13 C 0.030 3.970 14 C 0.075 3.925 15 C -0.088 4.088 16 C -0.125 4.125 17 C -0.121 4.121 18 C 0.105 3.895 19 N -0.742 5.742 20 C 0.510 3.490 21 O -0.548 6.548 22 H 0.040 0.960 23 H 0.030 0.970 24 H 0.043 0.957 25 H 0.260 0.740 26 H 0.021 0.979 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 -1.370 19.604 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.113 3.887 3 H 0.011 0.989 4 C -0.546 4.546 5 H 0.068 0.932 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.200 1.200 12 N -0.253 5.253 13 C -0.118 4.118 14 C -0.054 4.054 15 C -0.093 4.093 16 C -0.183 4.183 17 C -0.159 4.159 18 C -0.018 4.018 19 N -0.398 5.398 20 C 0.295 3.705 21 O -0.423 6.423 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.659 -1.474 18.880 19.010 hybrid contribution -0.183 0.143 -1.469 1.487 sum 1.476 -1.331 17.411 17.524 Atomic orbital electron populations 1.22164 1.00114 0.99019 0.99670 1.18989 0.89653 0.92375 0.87648 0.98909 1.21407 1.34007 1.07823 0.91403 0.93192 1.25703 0.95715 0.95739 1.01875 1.70072 1.45147 1.17273 1.24085 0.85566 0.78522 0.78509 0.79186 1.19555 1.20887 1.19961 1.62069 1.59604 1.02222 1.01407 1.22552 0.96733 0.90732 1.01734 1.22026 0.95768 0.97268 0.90365 1.21443 0.92452 0.99136 0.96253 1.21836 1.03423 0.92016 1.00981 1.22817 0.97197 0.99184 0.96668 1.22243 0.89451 1.03593 0.86551 1.46386 1.18097 1.57285 1.18079 1.21221 0.88758 0.77133 0.83374 1.90813 1.73485 1.55095 1.22953 0.94109 0.95087 0.93767 0.93095 0.96049 0.93661 0.90256 0.92777 0.93872 0.90238 0.90147 0.93474 0.90247 0.86043 0.88939 0.88331 0.75335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.49 8.52 71.98 0.61 -6.88 16 2 C 0.22 12.15 2.12 44.17 0.09 12.24 16 3 H -0.01 -0.45 7.90 -2.39 -0.02 -0.47 16 4 C -0.51 -30.62 7.84 25.60 0.20 -30.42 16 5 H 0.05 3.07 6.62 -2.91 -0.02 3.05 16 6 C 0.01 0.44 5.23 84.66 0.44 0.88 16 7 N -0.93 -57.04 11.96 21.45 0.26 -56.78 16 8 Si 0.96 47.17 29.54 68.60 2.03 49.20 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.27 -13.49 7.11 99.48 0.71 -12.79 16 12 N -0.53 -24.48 3.06 -901.44 -2.76 -27.23 16 13 C 0.03 1.24 8.20 127.69 1.05 2.29 16 14 C 0.07 2.71 3.22 86.30 0.28 2.99 16 15 C -0.09 -2.48 0.71 -52.19 -0.04 -2.52 16 16 C -0.13 -2.95 7.17 71.98 0.52 -2.44 16 17 C -0.12 -2.06 6.18 31.65 0.20 -1.86 16 18 C 0.10 1.51 7.78 86.83 0.68 2.19 16 19 N -0.74 -18.06 6.24 -459.81 -2.87 -20.93 16 20 C 0.51 18.01 7.15 87.90 0.63 18.63 16 21 O -0.55 -26.76 16.55 -3.03 -0.05 -26.81 16 22 H 0.04 1.90 6.39 -2.39 -0.02 1.89 16 23 H 0.03 1.35 7.47 -2.39 -0.02 1.33 16 24 H 0.04 2.44 6.64 -2.39 -0.02 2.43 16 25 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 26 H 0.02 0.80 6.57 -2.39 -0.02 0.78 16 27 H 0.04 2.08 6.15 -2.38 -0.01 2.06 16 28 H 0.08 2.78 4.64 -2.39 -0.01 2.77 16 29 H 0.05 1.73 7.57 -2.39 -0.02 1.71 16 30 H 0.04 1.70 7.49 -2.39 -0.02 1.68 16 31 H 0.08 1.40 8.07 -2.39 -0.02 1.38 16 32 H 0.08 1.60 8.05 -2.38 -0.02 1.58 16 33 H 0.05 1.40 5.92 -2.39 -0.01 1.39 16 34 H 0.08 1.41 7.80 -2.38 -0.02 1.39 16 35 H 0.12 1.27 7.90 -2.39 -0.02 1.25 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.41 8.95 8.96 -92.71 -0.83 8.12 16 Total: -1.00 -78.04 291.54 1.49 -76.55 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.23 Total: 10.90 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 4.66 Total: -4.89 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -5.37 Total: -104.95 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -78.04 1.49 -76.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698270496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.275 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds