Wall clock time and date at job start Mon Mar 30 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 C 1.50705 * 109.46894 * 240.00444 * 2 1 3 5 5 H 1.08005 * 119.99482 * 275.00232 * 4 2 1 6 6 C 1.37873 * 120.00110 * 95.00294 * 4 2 1 7 7 N 1.31513 * 120.00186 * 184.91903 * 6 4 2 8 8 Si 1.86801 * 120.00208 * 4.91331 * 6 4 2 9 9 H 1.48498 * 109.47204 * 84.83267 * 8 6 4 10 10 H 1.48495 * 109.47413 * 204.83584 * 8 6 4 11 11 H 1.48501 * 109.46723 * 324.83732 * 8 6 4 12 12 N 1.46494 * 109.47311 * 120.00226 * 2 1 3 13 13 C 1.34777 * 120.00277 * 274.99625 * 12 2 1 14 14 O 1.21283 * 119.99658 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00271 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.46658 * 60.00536 * 15 13 12 17 17 C 1.53002 * 109.47353 * 300.00667 * 15 13 12 18 18 N 1.46898 * 109.47337 * 64.99494 * 17 15 13 19 19 C 1.52996 * 109.46979 * 180.02562 * 15 13 12 20 20 C 1.53785 * 113.61246 * 180.02562 * 19 15 13 21 21 C 1.53774 * 87.08175 * 139.98358 * 20 19 15 22 22 C 1.53785 * 87.17403 * 334.52315 * 21 20 19 23 23 H 1.09005 * 109.46823 * 295.03669 * 1 2 3 24 24 H 1.09001 * 109.47514 * 55.03014 * 1 2 3 25 25 H 1.09001 * 109.47262 * 175.03489 * 1 2 3 26 26 H 0.96992 * 120.00559 * 179.97438 * 7 6 4 27 27 H 0.97007 * 120.00003 * 94.99984 * 12 2 1 28 28 H 1.09000 * 109.47113 * 184.99771 * 17 15 13 29 29 H 1.08999 * 109.46612 * 304.99580 * 17 15 13 30 30 H 1.00902 * 110.99779 * 56.04464 * 18 17 15 31 31 H 1.00894 * 111.00447 * 180.02562 * 18 17 15 32 32 H 1.08997 * 112.84767 * 48.80849 * 19 15 13 33 33 H 1.09005 * 113.61356 * 25.43034 * 20 19 15 34 34 H 1.09000 * 113.61218 * 254.53545 * 20 19 15 35 35 H 1.08998 * 113.61913 * 89.11905 * 21 20 19 36 36 H 1.09005 * 113.61288 * 219.93176 * 21 20 19 37 37 H 1.08998 * 113.60956 * 140.02307 * 22 21 20 38 38 H 1.08997 * 113.61501 * 270.93208 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6129 -3.4623 8 14 2.3136 1.8792 -2.3174 9 1 3.5991 2.3949 -1.7821 10 1 2.1058 2.3993 -3.6927 11 1 1.1987 2.3275 -1.4449 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6490 -0.7289 3.5877 16 1 3.6482 -1.1214 3.3984 17 6 1.7045 -1.8826 3.9313 18 7 1.7463 -2.8857 2.8590 19 6 2.7001 0.2540 4.7590 20 6 3.2023 -0.3748 6.0694 21 6 3.9791 0.9309 6.3065 22 6 3.9721 1.1228 4.7806 23 1 -0.3633 0.4349 0.9312 24 1 -0.3634 0.5890 -0.8421 25 1 -0.3634 -1.0238 -0.0889 26 1 2.9361 -0.1047 -4.2556 27 1 2.2491 -1.6318 1.1525 28 1 2.0169 -2.3406 4.8698 29 1 0.6883 -1.5019 4.0334 30 1 2.6897 -3.2070 2.7011 31 1 1.1301 -3.6583 3.0623 32 1 1.7784 0.8245 4.8732 33 1 3.8436 -1.2434 5.9192 34 1 2.4125 -0.5518 6.7995 35 1 3.4078 1.6874 6.8444 36 1 4.9748 0.7772 6.7226 37 1 3.8034 2.1542 4.4711 38 1 4.8234 0.6630 4.2788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698435626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:48 Heat of formation + Delta-G solvation = -32.863790 kcal Electronic energy + Delta-G solvation = -17985.540603 eV Core-core repulsion = 15248.894264 eV Total energy + Delta-G solvation = -2736.646339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82444 -37.88180 -34.95728 -34.61885 -32.10994 -30.23331 -29.07563 -25.69561 -25.18936 -24.15668 -22.72697 -20.41122 -19.34905 -19.22906 -17.33602 -16.06974 -16.03438 -15.36091 -14.96113 -14.63087 -14.53751 -13.79515 -13.62027 -12.84739 -12.76817 -12.41586 -12.38730 -12.25003 -12.18219 -11.60954 -11.39028 -11.00132 -10.96616 -10.70626 -10.53003 -10.41852 -10.22511 -10.07580 -9.78660 -9.07416 -8.90963 -8.61915 -8.55301 -7.76364 -6.13836 -4.15563 3.32928 3.40041 3.48991 3.52884 4.18111 4.40309 4.41545 4.67263 4.80681 4.85295 4.91824 5.21628 5.32212 5.34978 5.41602 5.58847 5.69191 5.74633 5.81911 5.86410 6.00164 6.06770 6.20806 6.34887 6.50866 6.59695 6.69227 6.84165 7.08663 7.09904 7.37849 7.41801 7.57280 7.79610 8.32502 8.85712 8.91534 9.31721 9.51140 10.98268 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029714 B = 0.006795 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.083376 B = 4119.899038 C = 4592.726274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.229 3.771 3 H 0.045 0.955 4 C -0.523 4.523 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.687 5.687 13 C 0.509 3.491 14 O -0.571 6.571 15 C -0.102 4.102 16 H 0.088 0.912 17 C 0.075 3.925 18 N -0.848 5.848 19 C -0.084 4.084 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.131 4.131 23 H 0.026 0.974 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.266 0.734 27 H 0.402 0.598 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.341 0.659 31 H 0.345 0.655 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -2.838 17.539 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.126 3.874 3 H 0.063 0.937 4 C -0.562 4.562 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.337 5.337 13 C 0.293 3.707 14 O -0.452 6.452 15 C -0.123 4.123 16 H 0.106 0.894 17 C -0.057 4.057 18 N -0.378 5.378 19 C -0.103 4.103 20 C -0.175 4.175 21 C -0.180 4.180 22 C -0.169 4.169 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.240 0.760 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.602 -1.429 16.862 16.933 hybrid contribution 0.491 -0.177 0.504 0.726 sum 1.093 -1.606 17.366 17.474 Atomic orbital electron populations 1.22174 0.98889 1.00387 0.98786 1.19062 0.90833 0.94122 0.83342 0.93712 1.21053 1.44506 0.95638 0.94953 0.90384 1.24937 0.93864 0.98458 0.95212 1.69887 1.45476 1.36010 1.01659 0.86900 0.79726 0.86157 0.77116 1.20015 1.21358 1.18535 1.46642 1.63654 1.14488 1.08949 1.20225 0.78628 0.87058 0.84773 1.90606 1.52675 1.16432 1.85441 1.21455 1.00144 0.96060 0.94687 0.89393 1.21672 1.00021 0.92000 0.91963 1.58564 1.14232 1.18416 1.46627 1.22319 0.99411 0.96223 0.92391 1.22975 0.99738 0.97299 0.97507 1.22802 1.00211 0.97889 0.97105 1.22924 0.97546 1.01006 0.95383 0.95467 0.93410 0.93435 0.92434 0.75992 0.94723 0.90745 0.84587 0.84166 0.88433 0.90397 0.91745 0.90401 0.91817 0.91099 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.47 37.16 0.35 -3.00 16 2 C 0.23 5.76 2.22 -69.08 -0.15 5.60 16 3 H 0.05 1.23 4.73 -51.93 -0.25 0.98 16 4 C -0.52 -14.58 9.05 -34.44 -0.31 -14.89 16 5 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 8 Si 0.87 22.35 26.99 -169.99 -4.59 17.76 16 9 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.63 6.82 56.52 0.39 -6.24 16 12 N -0.69 -14.65 4.78 -54.93 -0.26 -14.92 16 13 C 0.51 10.17 7.11 -10.98 -0.08 10.09 16 14 O -0.57 -13.45 15.51 5.56 0.09 -13.36 16 15 C -0.10 -1.45 2.16 -91.77 -0.20 -1.64 16 16 H 0.09 1.16 7.95 -51.93 -0.41 0.75 16 17 C 0.07 0.87 6.05 -3.82 -0.02 0.85 16 18 N -0.85 -9.60 7.25 -10.37 -0.08 -9.67 16 19 C -0.08 -1.11 2.54 -89.66 -0.23 -1.34 16 20 C -0.14 -1.37 6.59 -25.92 -0.17 -1.54 16 21 C -0.14 -1.46 8.07 -25.92 -0.21 -1.67 16 22 C -0.13 -1.70 7.63 -25.77 -0.20 -1.90 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.40 7.85 6.48 -40.82 -0.26 7.59 16 28 H 0.03 0.33 7.28 -51.93 -0.38 -0.05 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.34 3.42 8.96 -39.29 -0.35 3.07 16 31 H 0.35 3.19 9.08 -39.29 -0.36 2.83 16 32 H 0.10 1.44 7.85 -51.93 -0.41 1.04 16 33 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -32.20 305.77 -6.98 -39.18 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.21 Total: 9.79 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.31 Total: -7.27 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.44 Total: -50.71 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.59 Total: 17.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.20 -6.98 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698435626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.319 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds