Wall clock time and date at job start Mon Mar 30 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 C 1.50705 * 109.46894 * 240.00444 * 2 1 3 5 5 H 1.08005 * 119.99482 * 275.00232 * 4 2 1 6 6 C 1.37873 * 120.00110 * 95.00294 * 4 2 1 7 7 N 1.31513 * 120.00186 * 184.91903 * 6 4 2 8 8 Si 1.86801 * 120.00208 * 4.91331 * 6 4 2 9 9 H 1.48498 * 109.47204 * 84.83267 * 8 6 4 10 10 H 1.48495 * 109.47413 * 204.83584 * 8 6 4 11 11 H 1.48501 * 109.46723 * 324.83732 * 8 6 4 12 12 N 1.46494 * 109.47311 * 120.00226 * 2 1 3 13 13 C 1.34777 * 120.00277 * 274.99625 * 12 2 1 14 14 O 1.21283 * 119.99658 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00271 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.46658 * 60.00536 * 15 13 12 17 17 C 1.53002 * 109.47353 * 300.00667 * 15 13 12 18 18 N 1.46898 * 109.47337 * 64.99494 * 17 15 13 19 19 C 1.52996 * 109.46979 * 180.02562 * 15 13 12 20 20 C 1.53785 * 113.61246 * 180.02562 * 19 15 13 21 21 C 1.53774 * 87.08175 * 139.98358 * 20 19 15 22 22 C 1.53785 * 87.17403 * 334.52315 * 21 20 19 23 23 H 1.09005 * 109.46823 * 295.03669 * 1 2 3 24 24 H 1.09001 * 109.47514 * 55.03014 * 1 2 3 25 25 H 1.09001 * 109.47262 * 175.03489 * 1 2 3 26 26 H 0.96992 * 120.00559 * 179.97438 * 7 6 4 27 27 H 0.97007 * 120.00003 * 94.99984 * 12 2 1 28 28 H 1.09000 * 109.47113 * 184.99771 * 17 15 13 29 29 H 1.08999 * 109.46612 * 304.99580 * 17 15 13 30 30 H 1.00902 * 110.99779 * 56.04464 * 18 17 15 31 31 H 1.00894 * 111.00447 * 180.02562 * 18 17 15 32 32 H 1.08997 * 112.84767 * 48.80849 * 19 15 13 33 33 H 1.09005 * 113.61356 * 25.43034 * 20 19 15 34 34 H 1.09000 * 113.61218 * 254.53545 * 20 19 15 35 35 H 1.08998 * 113.61913 * 89.11905 * 21 20 19 36 36 H 1.09005 * 113.61288 * 219.93176 * 21 20 19 37 37 H 1.08998 * 113.60956 * 140.02307 * 22 21 20 38 38 H 1.08997 * 113.61501 * 270.93208 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6129 -3.4623 8 14 2.3136 1.8792 -2.3174 9 1 3.5991 2.3949 -1.7821 10 1 2.1058 2.3993 -3.6927 11 1 1.1987 2.3275 -1.4449 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6490 -0.7289 3.5877 16 1 3.6482 -1.1214 3.3984 17 6 1.7045 -1.8826 3.9313 18 7 1.7463 -2.8857 2.8590 19 6 2.7001 0.2540 4.7590 20 6 3.2023 -0.3748 6.0694 21 6 3.9791 0.9309 6.3065 22 6 3.9721 1.1228 4.7806 23 1 -0.3633 0.4349 0.9312 24 1 -0.3634 0.5890 -0.8421 25 1 -0.3634 -1.0238 -0.0889 26 1 2.9361 -0.1047 -4.2556 27 1 2.2491 -1.6318 1.1525 28 1 2.0169 -2.3406 4.8698 29 1 0.6883 -1.5019 4.0334 30 1 2.6897 -3.2070 2.7011 31 1 1.1301 -3.6583 3.0623 32 1 1.7784 0.8245 4.8732 33 1 3.8436 -1.2434 5.9192 34 1 2.4125 -0.5518 6.7995 35 1 3.4078 1.6874 6.8444 36 1 4.9748 0.7772 6.7226 37 1 3.8034 2.1542 4.4711 38 1 4.8234 0.6630 4.2788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698435626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:48 Heat of formation + Delta-G solvation = -56.520339 kcal Electronic energy + Delta-G solvation = -17986.566428 eV Core-core repulsion = 15248.894264 eV Total energy + Delta-G solvation = -2737.672164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13356 -39.19073 -36.55128 -35.99557 -34.20151 -31.66652 -30.57063 -27.30610 -26.59889 -25.11892 -24.06671 -22.04737 -20.95559 -20.30494 -19.19888 -17.71550 -17.31082 -16.70884 -16.18034 -16.06820 -15.88651 -15.36895 -14.74958 -14.59458 -14.31007 -14.18696 -13.96027 -13.32471 -13.21275 -13.11777 -13.02007 -12.77206 -12.61285 -12.39827 -12.06590 -11.86958 -11.44337 -11.22375 -11.17593 -11.01988 -10.83147 -10.45773 -9.59308 -9.48796 -8.37175 -6.41640 1.27905 1.31714 1.43676 1.96262 2.27758 2.64386 3.07048 3.46246 3.72115 3.82250 3.95263 4.00696 4.20108 4.32338 4.39646 4.48328 4.62913 4.70357 4.78430 4.87601 4.88137 4.89274 4.93225 5.10052 5.12246 5.13933 5.20085 5.42632 5.43717 5.49894 5.65143 5.92398 6.21194 6.27869 6.63053 6.66865 7.16528 7.24484 7.71947 8.78081 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029714 B = 0.006795 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.083376 B = 4119.899038 C = 4592.726274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.231 3.769 3 H 0.023 0.977 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.033 3.967 7 N -0.930 5.930 8 Si 0.926 3.074 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.261 1.261 12 N -0.688 5.688 13 C 0.502 3.498 14 O -0.610 6.610 15 C -0.091 4.091 16 H 0.104 0.896 17 C 0.083 3.917 18 N -0.864 5.864 19 C -0.093 4.093 20 C -0.119 4.119 21 C -0.133 4.133 22 C -0.145 4.145 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.270 0.730 27 H 0.411 0.589 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.350 0.650 31 H 0.358 0.642 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -3.527 19.704 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.126 3.874 3 H 0.041 0.959 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.167 4.167 7 N -0.569 5.569 8 Si 0.751 3.249 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.185 1.185 12 N -0.339 5.339 13 C 0.289 3.711 14 O -0.493 6.493 15 C -0.112 4.112 16 H 0.122 0.878 17 C -0.048 4.048 18 N -0.398 5.398 19 C -0.113 4.113 20 C -0.156 4.156 21 C -0.170 4.170 22 C -0.182 4.182 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.251 0.749 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.885 -2.149 19.048 19.189 hybrid contribution 0.402 0.008 -0.157 0.432 sum 1.288 -2.141 18.891 19.055 Atomic orbital electron populations 1.22052 0.97579 1.00898 0.98864 1.18830 0.91792 0.92862 0.83885 0.95927 1.21192 1.43845 0.94742 0.96066 0.92602 1.25569 0.93967 1.02126 0.95027 1.69972 1.47043 1.37544 1.02373 0.86075 0.79476 0.81809 0.77539 1.20135 1.20055 1.18547 1.46488 1.64057 1.14867 1.08507 1.21250 0.77386 0.86728 0.85734 1.90584 1.54164 1.18411 1.86147 1.21475 1.01203 0.96657 0.91878 0.87761 1.21589 0.98556 0.91179 0.93510 1.58485 1.15261 1.19121 1.46892 1.22347 0.98533 0.96442 0.93934 1.22920 0.99978 0.97491 0.95200 1.22769 1.01377 0.98189 0.94690 1.23016 0.97694 0.99490 0.98015 0.94936 0.93830 0.92571 0.92094 0.74937 0.91156 0.92148 0.83652 0.82701 0.90627 0.88573 0.90117 0.90126 0.90093 0.93790 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 9.47 71.98 0.68 -5.57 16 2 C 0.23 11.59 2.22 44.25 0.10 11.69 16 3 H 0.02 1.25 4.73 -2.39 -0.01 1.24 16 4 C -0.52 -29.24 9.05 25.60 0.23 -29.01 16 5 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 6 C 0.03 1.92 5.47 84.65 0.46 2.38 16 7 N -0.93 -56.52 13.96 21.45 0.30 -56.22 16 8 Si 0.93 46.37 26.99 68.60 1.85 48.22 16 9 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.26 -12.98 6.82 99.48 0.68 -12.30 16 12 N -0.69 -29.07 4.78 -446.10 -2.13 -31.20 16 13 C 0.50 19.83 7.11 87.66 0.62 20.46 16 14 O -0.61 -29.05 15.51 -3.04 -0.05 -29.09 16 15 C -0.09 -2.41 2.16 -11.54 -0.02 -2.43 16 16 H 0.10 2.47 7.95 -2.38 -0.02 2.45 16 17 C 0.08 1.71 6.05 86.30 0.52 2.23 16 18 N -0.86 -17.53 7.25 -186.72 -1.35 -18.89 16 19 C -0.09 -2.30 2.54 -10.17 -0.03 -2.33 16 20 C -0.12 -1.92 6.59 31.12 0.21 -1.71 16 21 C -0.13 -2.36 8.07 31.12 0.25 -2.11 16 22 C -0.14 -3.61 7.63 31.21 0.24 -3.37 16 23 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.41 15.74 6.48 -92.70 -0.60 15.14 16 28 H 0.07 1.01 7.28 -2.39 -0.02 0.99 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.35 6.10 8.96 -89.69 -0.80 5.30 16 31 H 0.36 5.72 9.08 -89.70 -0.81 4.90 16 32 H 0.08 2.21 7.85 -2.39 -0.02 2.19 16 33 H 0.10 1.26 8.10 -2.38 -0.02 1.24 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 Total: -1.00 -70.01 305.77 0.70 -69.31 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -1.18 Total: 27.64 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 3.26 Total: -9.77 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.19 Total: -106.31 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.09 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.85 Total: 48.22 kcal Total: -70.01 0.70 -69.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698435626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.785 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds