Wall clock time and date at job start Mon Mar 30 2020 03:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46576 * 2 1 4 4 C 1.50702 * 109.47100 * 119.99676 * 2 1 3 5 5 H 1.08004 * 119.99698 * 120.00383 * 4 2 1 6 6 C 1.37871 * 120.00281 * 300.00215 * 4 2 1 7 7 N 1.31519 * 119.99893 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00252 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47013 * 89.99900 * 8 6 4 10 10 H 1.48493 * 109.47507 * 210.00391 * 8 6 4 11 11 H 1.48501 * 109.46943 * 330.00409 * 8 6 4 12 12 N 1.46497 * 109.47218 * 239.99769 * 2 1 3 13 13 C 1.34780 * 119.99566 * 85.00262 * 12 2 1 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 17 17 C 1.53002 * 109.47419 * 59.99803 * 15 13 12 18 18 N 1.46896 * 109.47181 * 185.00155 * 17 15 13 19 19 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 20 20 C 1.53779 * 113.61807 * 157.49597 * 19 15 13 21 21 C 1.53775 * 87.08445 * 220.02120 * 20 19 15 22 22 C 1.53780 * 87.08291 * 25.43110 * 21 20 19 23 23 H 1.09006 * 109.46570 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47614 * 299.99524 * 1 2 3 25 25 H 1.08998 * 109.47302 * 60.00130 * 1 2 3 26 26 H 0.96997 * 119.99814 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00423 * 264.99567 * 12 2 1 28 28 H 1.09008 * 109.46873 * 305.00091 * 17 15 13 29 29 H 1.08997 * 109.47047 * 64.99780 * 17 15 13 30 30 H 1.00898 * 111.00117 * 179.97438 * 18 17 15 31 31 H 1.00903 * 111.00011 * 303.95191 * 18 17 15 32 32 H 1.09006 * 112.85292 * 288.80718 * 19 15 13 33 33 H 1.09003 * 113.61460 * 334.56934 * 20 19 15 34 34 H 1.08997 * 113.61480 * 105.47119 * 20 19 15 35 35 H 1.09008 * 113.61327 * 270.88310 * 21 20 19 36 36 H 1.08999 * 113.69441 * 139.99189 * 21 20 19 37 37 H 1.08996 * 113.61725 * 220.02384 * 22 21 20 38 38 H 1.08994 * 113.61525 * 89.11921 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5458 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4860 -2.5661 3.7120 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8583 1.1584 -2.4117 15 6 2.6489 -0.7288 -3.5877 16 1 3.6481 -1.1213 -3.3985 17 6 1.7044 -1.8823 -3.9314 18 7 2.2559 -2.6478 -5.0574 19 6 2.7000 0.2542 -4.7590 20 6 3.6715 -0.1664 -5.8744 21 6 4.0680 1.3156 -5.9800 22 6 3.6262 1.4571 -4.5138 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7081 1.1608 3.4844 27 1 2.2491 -1.6317 -1.1526 28 1 1.5984 -2.5355 -3.0652 29 1 0.7284 -1.4829 -4.2069 30 1 1.6500 -3.4162 -5.3035 31 1 2.4240 -2.0504 -5.8530 32 1 1.7104 0.5321 -5.1219 33 1 4.4798 -0.8111 -5.5292 34 1 3.1739 -0.5498 -6.7651 35 1 3.4528 1.8835 -6.6781 36 1 5.1358 1.4736 -6.1315 37 1 3.0921 2.3843 -4.3063 38 1 4.4221 1.2563 -3.7967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698436093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:56 Heat of formation + Delta-G solvation = -34.004292 kcal Electronic energy + Delta-G solvation = -17848.695611 eV Core-core repulsion = 15111.999816 eV Total energy + Delta-G solvation = -2736.695795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.89579 -37.82854 -34.83942 -34.69702 -32.29107 -30.22504 -28.38038 -25.43516 -25.24447 -24.61187 -22.47158 -20.60543 -19.30336 -19.14442 -17.23313 -16.25261 -15.82362 -15.52376 -14.87275 -14.58782 -14.33490 -13.91648 -13.49739 -12.89833 -12.70337 -12.36072 -12.26707 -12.20228 -11.75490 -11.42524 -11.27074 -11.04435 -10.94507 -10.69264 -10.40902 -10.28982 -10.21823 -10.16232 -9.85071 -9.02844 -8.82599 -8.74472 -8.52016 -7.84497 -6.10479 -4.19564 3.25768 3.32310 3.34316 3.44878 4.07620 4.37939 4.63532 4.73709 4.76694 4.87616 5.06306 5.21710 5.27991 5.36707 5.52090 5.73024 5.76613 5.81623 5.92861 5.93759 6.02086 6.12612 6.39257 6.45288 6.67622 6.84373 6.98461 7.05195 7.17865 7.38016 7.50845 7.60217 7.72514 7.94544 8.17577 8.72703 8.81776 9.20018 9.48510 10.95486 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034958 B = 0.005603 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.760531 B = 4996.354666 C = 5238.988034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.506 3.494 14 O -0.550 6.550 15 C -0.101 4.101 16 H 0.099 0.901 17 C 0.072 3.928 18 N -0.850 5.850 19 C -0.089 4.089 20 C -0.133 4.133 21 C -0.148 4.148 22 C -0.119 4.119 23 H 0.025 0.975 24 H 0.089 0.911 25 H 0.013 0.987 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.339 0.661 31 H 0.341 0.659 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 -4.697 -14.660 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.358 5.358 13 C 0.290 3.710 14 O -0.428 6.428 15 C -0.122 4.122 16 H 0.117 0.883 17 C -0.059 4.059 18 N -0.382 5.382 19 C -0.108 4.108 20 C -0.171 4.171 21 C -0.185 4.185 22 C -0.156 4.156 23 H 0.044 0.956 24 H 0.108 0.892 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.355 -3.866 -14.021 14.926 hybrid contribution -0.528 -0.662 0.485 0.977 sum 2.827 -4.529 -13.536 14.550 Atomic orbital electron populations 1.22065 0.98599 0.98974 1.00790 1.18710 0.90921 0.93973 0.80180 0.93465 1.21236 1.32301 1.13171 0.90393 0.92123 1.24891 0.94819 0.94973 0.99053 1.69908 1.35907 1.22558 1.23816 0.86454 0.78594 0.79865 0.82216 1.20568 1.21097 1.19848 1.46561 1.65096 1.13479 1.10641 1.20308 0.78632 0.87496 0.84577 1.90636 1.50914 1.16059 1.85229 1.21454 1.01157 0.95502 0.94130 0.88307 1.21700 0.95015 0.94259 0.94910 1.58840 1.53423 1.14637 1.11283 1.22295 0.98570 0.95736 0.94158 1.23008 0.99434 0.96577 0.98038 1.22887 1.00795 0.96764 0.98100 1.22741 0.98654 0.99023 0.95209 0.95586 0.89232 0.96766 0.92624 0.78012 0.90435 0.95140 0.84936 0.84384 0.89571 0.89596 0.92040 0.90660 0.91828 0.90911 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.79 2.56 -69.08 -0.18 6.61 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 12 N -0.71 -14.90 4.93 -54.93 -0.27 -15.17 16 13 C 0.51 10.05 6.92 -10.98 -0.08 9.97 16 14 O -0.55 -12.93 14.51 5.56 0.08 -12.85 16 15 C -0.10 -1.48 2.22 -91.77 -0.20 -1.69 16 16 H 0.10 1.42 7.94 -51.93 -0.41 1.01 16 17 C 0.07 0.93 6.19 -3.83 -0.02 0.90 16 18 N -0.85 -8.82 9.50 -10.37 -0.10 -8.92 16 19 C -0.09 -1.20 2.51 -89.81 -0.23 -1.43 16 20 C -0.13 -1.41 5.82 -25.92 -0.15 -1.56 16 21 C -0.15 -1.64 8.08 -25.92 -0.21 -1.85 16 22 C -0.12 -1.70 6.19 -25.92 -0.16 -1.86 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.39 7.19 7.90 -40.82 -0.32 6.87 16 28 H 0.08 1.02 7.43 -51.92 -0.39 0.63 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.34 2.91 9.08 -39.29 -0.36 2.55 16 31 H 0.34 3.23 5.72 -39.29 -0.22 3.01 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 0.91 7.96 -51.93 -0.41 0.50 16 34 H 0.06 0.55 7.29 -51.93 -0.38 0.17 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.17 7.96 -51.93 -0.41 0.76 16 38 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -29.93 302.83 -7.51 -37.44 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.11 Total: 10.76 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.28 Total: -7.10 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.26 Total: -48.61 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.93 -7.51 -37.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698436093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.434 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds