Wall clock time and date at job start Mon Mar 30 2020 03:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 N 1.46900 * 109.46619 * 294.99903 * 4 2 1 6 6 C 1.46907 * 110.99641 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47010 * 179.97438 * 6 5 4 8 8 O 1.21292 * 120.00244 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00050 * 180.02562 * 9 7 6 11 11 H 1.08005 * 120.00410 * 359.97438 * 10 9 7 12 12 C 1.38954 * 120.00073 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00237 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99913 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46777 * 90.00450 * 14 12 10 16 16 H 1.48502 * 109.46903 * 209.99891 * 14 12 10 17 17 H 1.48495 * 109.47143 * 330.00316 * 14 12 10 18 18 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 19 19 C 1.53779 * 113.61807 * 157.49918 * 18 2 1 20 20 C 1.53775 * 87.08445 * 220.02120 * 19 18 2 21 21 C 1.53780 * 87.08291 * 25.43110 * 20 19 18 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 26 26 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 27 27 H 1.00900 * 111.00289 * 56.04740 * 5 4 2 28 28 H 1.08997 * 109.46942 * 299.99950 * 6 5 4 29 29 H 1.09003 * 109.47142 * 59.99974 * 6 5 4 30 30 H 0.96999 * 120.00218 * 359.97438 * 9 7 6 31 31 H 0.97003 * 120.00230 * 179.97438 * 13 12 10 32 32 H 1.09006 * 112.85292 * 288.81039 * 18 2 1 33 33 H 1.09003 * 113.61460 * 334.56934 * 19 18 2 34 34 H 1.08997 * 113.61480 * 105.47119 * 19 18 2 35 35 H 1.09008 * 113.61327 * 270.88310 * 20 19 18 36 36 H 1.08999 * 113.69441 * 139.99189 * 20 19 18 37 37 H 1.08996 * 113.61725 * 220.02384 * 21 20 19 38 38 H 1.08991 * 113.69226 * 89.12796 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6272 3.6672 7 6 1.7088 0.1787 4.8708 8 8 1.0803 1.2058 4.7253 9 7 2.0361 -0.2414 6.1089 10 6 1.6572 0.4914 7.2039 11 1 1.0969 1.4055 7.0744 12 6 1.9942 0.0580 8.4804 13 7 1.6315 0.7606 9.5300 14 14 2.9628 -1.5235 8.7045 15 1 4.4162 -1.2195 8.6935 16 1 2.5975 -2.1481 10.0013 17 1 2.6445 -2.4601 7.5969 18 6 2.0400 -0.7213 -1.2492 19 6 3.4726 -0.3278 -1.6461 20 6 2.9922 -0.3574 -3.1066 21 6 1.5811 -0.0723 -2.5658 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7995 1.2055 27 1 0.6529 0.1793 2.4753 28 1 1.6904 -1.6249 3.7296 29 1 3.2117 -0.7051 3.6405 30 1 2.5390 -1.0626 6.2253 31 1 1.8664 0.4579 10.4211 32 1 1.8757 -1.7983 -1.2129 33 1 3.7640 0.6647 -1.3023 34 1 4.2151 -1.0917 -1.4152 35 1 3.0896 -1.3351 -3.5786 36 1 3.3970 0.4496 -3.7173 37 1 0.7966 -0.6299 -3.0772 38 1 1.3539 0.9896 -2.4731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703026747.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:20 Heat of formation + Delta-G solvation = -28.238191 kcal Electronic energy + Delta-G solvation = -16913.898857 eV Core-core repulsion = 14177.453099 eV Total energy + Delta-G solvation = -2736.445758 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48615 -38.39257 -35.96274 -33.93539 -32.34980 -31.60133 -27.60014 -26.41063 -25.36261 -24.55253 -22.96641 -20.43568 -19.57561 -19.31908 -18.31335 -16.28196 -15.66776 -15.50873 -15.40262 -14.82375 -14.16996 -13.90226 -13.56099 -13.25668 -13.05273 -12.69345 -12.61193 -12.51374 -12.13459 -11.84408 -11.81432 -11.64685 -11.15772 -11.02965 -10.89981 -10.58280 -10.56818 -10.20973 -10.11222 -9.94835 -9.54944 -8.54202 -8.16408 -8.06469 -6.29054 -3.80300 3.04138 3.08616 3.16347 3.77554 4.10939 4.14381 4.43703 4.50216 4.60910 4.69278 4.91775 5.03971 5.19379 5.24918 5.28190 5.44713 5.53886 5.60719 5.61288 5.66899 5.69958 5.71232 5.78514 5.83549 5.88098 5.97131 6.00937 6.09661 6.22975 6.26694 6.46042 7.19325 7.60989 7.67131 8.17124 8.62545 8.97407 9.44997 9.85931 10.84199 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052589 B = 0.003889 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.302316 B = 7197.964779 C = 7498.466326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.081 0.919 4 C 0.065 3.935 5 N -0.670 5.670 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.592 5.592 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C -0.104 4.104 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.135 4.135 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.350 0.650 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 -7.393 -21.220 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.065 4.065 5 N -0.303 5.303 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.446 6.446 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.523 5.523 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.123 4.123 19 C -0.174 4.174 20 C -0.183 4.183 21 C -0.172 4.172 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.854 -6.233 -21.100 22.185 hybrid contribution 0.211 -2.090 0.513 2.163 sum 3.065 -8.323 -20.586 22.416 Atomic orbital electron populations 1.21840 0.95364 1.01443 1.02091 1.21141 0.95677 1.00229 0.92792 0.90050 1.21989 1.00483 0.94252 0.89741 1.60117 1.21104 1.49104 0.99998 1.21703 1.01191 0.95327 0.90306 1.19749 0.85152 0.87882 0.83604 1.90560 1.43057 1.25591 1.85418 1.42209 1.51261 1.23663 1.05993 1.19441 1.33648 1.07555 0.82694 0.86295 1.25038 0.97884 0.98118 0.95154 1.69624 1.45752 1.38534 0.98358 0.86663 0.80886 0.83264 0.78523 1.19595 1.20210 1.19539 1.22557 0.96125 0.99694 0.93894 1.22963 0.96521 1.02028 0.95927 1.22818 0.97160 1.01573 0.96701 1.22907 0.96605 1.01153 0.96541 0.93179 0.92004 0.92605 0.95784 0.91201 0.82996 0.93928 0.89563 0.79698 0.91639 0.89598 0.89872 0.91769 0.90544 0.91708 0.91857 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.77 37.16 0.33 -1.24 16 2 C -0.08 -0.85 2.34 -90.62 -0.21 -1.07 16 3 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 4 C 0.06 0.80 5.14 -3.82 -0.02 0.78 16 5 N -0.67 -10.83 6.12 -115.05 -0.70 -11.54 16 6 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 7 C 0.45 10.51 7.82 -10.99 -0.09 10.42 16 8 O -0.56 -15.52 15.78 5.55 0.09 -15.43 16 9 N -0.59 -14.39 5.09 -10.96 -0.06 -14.45 16 10 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 11 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -26.07 13.96 55.50 0.77 -25.30 16 14 Si 0.88 19.59 27.74 -169.99 -4.71 14.87 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 18 C -0.10 -0.92 3.13 -89.81 -0.28 -1.20 16 19 C -0.14 -1.17 7.63 -25.92 -0.20 -1.37 16 20 C -0.15 -1.10 8.08 -25.92 -0.21 -1.31 16 21 C -0.13 -1.09 6.68 -25.92 -0.17 -1.26 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.73 6.68 -51.93 -0.35 0.39 16 24 H 0.05 0.52 7.45 -51.93 -0.39 0.14 16 25 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.35 5.86 6.68 -39.29 -0.26 5.59 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -31.87 308.52 -7.36 -39.23 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.26 Total: 11.31 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.13 Total: -3.34 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.01 Total: -51.28 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.09 Total: -15.43 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.87 -7.36 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703026747.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.989 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds