Wall clock time and date at job start Mon Mar 30 2020 04:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47100 * 2 1 4 4 N 1.46503 * 109.47080 * 120.00180 * 2 1 3 5 5 C 1.46500 * 119.99878 * 115.50641 * 4 2 1 6 6 C 1.50691 * 109.47489 * 89.99828 * 5 4 2 7 7 H 1.08011 * 120.00182 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00220 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99983 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99994 * 179.72345 * 8 6 5 11 11 H 1.48496 * 109.47031 * 60.00494 * 10 8 6 12 12 H 1.48496 * 109.46720 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47037 * 300.00562 * 10 8 6 14 14 C 1.34776 * 119.99918 * 295.49888 * 4 2 1 15 15 O 1.21282 * 120.00054 * 4.47094 * 14 4 2 16 16 C 1.50702 * 120.00055 * 184.46565 * 14 4 2 17 17 H 1.08994 * 112.84618 * 26.14200 * 16 14 4 18 18 C 1.53779 * 113.61555 * 157.34385 * 16 14 4 19 19 C 1.53775 * 87.08231 * 139.98111 * 18 16 14 20 20 H 1.08998 * 113.61434 * 220.01786 * 19 18 16 21 21 N 1.46899 * 113.61637 * 89.20107 * 19 18 16 22 22 C 1.53778 * 87.08326 * 334.56790 * 19 18 16 23 23 H 1.08996 * 109.46909 * 306.50764 * 1 2 3 24 24 H 1.08997 * 109.47161 * 66.51046 * 1 2 3 25 25 H 1.09001 * 109.46714 * 186.50374 * 1 2 3 26 26 H 1.09000 * 109.47372 * 240.00017 * 2 1 3 27 27 H 1.09004 * 109.47246 * 181.71307 * 3 2 1 28 28 H 1.08994 * 109.47675 * 301.72168 * 3 2 1 29 29 H 1.09006 * 109.47069 * 61.71973 * 3 2 1 30 30 H 1.08997 * 109.47338 * 329.99513 * 5 4 2 31 31 H 1.09007 * 109.46757 * 209.99708 * 5 4 2 32 32 H 0.96999 * 119.99770 * 179.97438 * 9 8 6 33 33 H 1.09004 * 113.61116 * 254.52977 * 18 16 14 34 34 H 1.09003 * 113.61313 * 25.34506 * 18 16 14 35 35 H 1.00902 * 111.00214 * 179.97438 * 21 19 18 36 36 H 1.00905 * 110.99429 * 303.95232 * 21 19 18 37 37 H 1.09008 * 113.61007 * 270.88818 * 22 19 18 38 38 H 1.08993 * 113.61978 * 139.98685 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7776 -1.9366 1.0639 6 6 4.2469 -1.6203 0.9543 7 1 4.5818 -0.5938 0.9809 8 6 5.1638 -2.6413 0.8211 9 7 4.7561 -3.8913 0.7892 10 14 6.9845 -2.2488 0.6774 11 1 7.4315 -1.5217 1.8926 12 1 7.7541 -3.5118 0.5447 13 1 7.2151 -1.4009 -0.5197 14 6 1.7692 -0.1797 2.4182 15 8 1.0727 0.8065 2.5327 16 6 2.3561 -0.8340 3.6424 17 1 3.2745 -1.3812 3.4306 18 6 2.4658 0.1091 4.8521 19 6 2.0183 -1.0792 5.7196 20 1 1.3213 -0.8041 6.5110 21 7 3.1314 -1.9075 6.2023 22 6 1.3327 -1.6381 4.4616 23 1 -0.3633 0.6114 0.8260 24 1 -0.3633 0.4096 -0.9425 25 1 -0.3633 -1.0211 0.1164 26 1 1.8934 -0.5138 -0.8900 27 1 3.1296 1.4426 -0.0307 28 1 1.6517 1.9652 -0.8741 29 1 1.7020 1.9473 0.9051 30 1 2.4524 -2.4670 0.1690 31 1 2.6049 -2.5619 1.9399 32 1 5.4011 -4.6096 0.6951 33 1 3.4840 0.4401 5.0567 34 1 1.7497 0.9306 4.8317 35 1 2.7942 -2.6734 6.7661 36 1 3.6921 -2.2433 5.4336 37 1 0.3058 -1.2949 4.3352 38 1 1.4360 -2.7174 4.3510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703584683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:33 Heat of formation + Delta-G solvation = -27.103993 kcal Electronic energy + Delta-G solvation = -18369.384357 eV Core-core repulsion = 15632.987781 eV Total energy + Delta-G solvation = -2736.396575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99655 -37.86975 -35.22463 -33.20137 -31.71068 -30.82178 -26.98965 -26.62834 -25.34514 -25.10760 -22.82712 -21.47740 -19.03106 -17.95945 -16.73094 -16.34227 -15.51363 -15.26781 -14.74802 -14.41456 -14.17324 -13.74930 -13.25347 -12.91681 -12.57889 -12.35783 -12.27256 -11.92798 -11.82306 -11.47940 -11.38237 -11.09463 -10.94737 -10.86383 -10.66625 -10.39176 -10.19263 -10.01853 -9.93667 -9.73481 -8.72747 -8.57848 -8.45040 -7.65961 -6.19903 -4.27724 3.23409 3.28324 3.30378 3.40504 3.99452 4.32451 4.67799 4.87642 5.06482 5.12579 5.25271 5.32058 5.50241 5.72535 5.78969 5.96471 5.98066 6.09749 6.10973 6.14599 6.23419 6.33385 6.37240 6.42450 6.45605 6.69836 6.79021 6.83782 6.87031 7.17996 7.34808 7.62131 7.63500 7.76045 8.04923 8.42134 8.80152 9.10915 9.40952 10.86197 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.010960 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.148272 B = 2554.097217 C = 3775.278701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 C -0.166 4.166 4 N -0.591 5.591 5 C 0.239 3.761 6 C -0.537 4.537 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.529 3.471 15 O -0.572 6.572 16 C -0.134 4.134 17 H 0.125 0.875 18 C -0.114 4.114 19 C 0.073 3.927 20 H 0.086 0.914 21 N -0.831 5.831 22 C -0.156 4.156 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.339 0.661 36 H 0.349 0.651 37 H 0.083 0.917 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 3.068 4.149 7.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 C -0.224 4.224 4 N -0.321 5.321 5 C 0.119 3.881 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.722 3.278 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.318 3.682 15 O -0.454 6.454 16 C -0.155 4.155 17 H 0.142 0.858 18 C -0.152 4.152 19 C -0.040 4.040 20 H 0.104 0.896 21 N -0.360 5.360 22 C -0.196 4.196 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.101 0.899 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.287 4.010 4.532 8.035 hybrid contribution 0.755 -0.879 -0.956 1.502 sum -4.532 3.131 3.576 6.567 Atomic orbital electron populations 1.22181 0.96191 1.01769 1.01940 1.20819 0.93174 0.93247 0.88495 1.22164 1.01184 0.96516 1.02506 1.48342 1.53155 1.26234 1.04391 1.19406 0.90423 0.80102 0.98157 1.21488 0.91256 0.93423 1.51358 0.92134 1.24940 0.99204 0.94829 0.94765 1.69916 1.34887 0.98788 1.49437 0.86596 0.84545 0.77666 0.78947 1.19963 1.21174 1.20176 1.20245 0.79775 0.83528 0.84639 1.90492 1.40393 1.27677 1.86842 1.22794 1.01188 0.99122 0.92384 0.85752 1.22955 1.02560 0.96535 0.93161 1.22406 0.92018 0.95119 0.94450 0.89605 1.58713 1.22539 1.27460 1.27297 1.23625 0.99005 0.99608 0.97392 0.91078 0.92861 0.93209 0.90040 0.92712 0.93054 0.90523 0.94892 0.94571 0.92496 0.90892 0.88782 0.84822 0.83707 0.89877 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.09 37.16 0.34 -2.40 16 2 C 0.15 2.78 3.27 -67.93 -0.22 2.56 16 3 C -0.17 -2.99 9.08 37.16 0.34 -2.66 16 4 N -0.59 -12.48 2.41 -167.47 -0.40 -12.89 16 5 C 0.24 5.64 4.71 -5.20 -0.02 5.62 16 6 C -0.54 -13.75 8.79 -34.44 -0.30 -14.06 16 7 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 10 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.53 10.93 6.51 -10.98 -0.07 10.86 16 15 O -0.57 -12.36 12.32 5.56 0.07 -12.29 16 16 C -0.13 -2.45 2.69 -90.96 -0.24 -2.70 16 17 H 0.12 2.54 5.95 -51.93 -0.31 2.23 16 18 C -0.11 -1.86 7.33 -25.92 -0.19 -2.05 16 19 C 0.07 1.02 5.17 -66.91 -0.35 0.68 16 20 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 21 N -0.83 -11.21 9.64 -3.98 -0.04 -11.25 16 22 C -0.16 -2.43 7.35 -25.92 -0.19 -2.62 16 23 H 0.07 1.29 6.54 -51.93 -0.34 0.95 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.55 7.83 -51.93 -0.41 1.14 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.50 5.95 -51.93 -0.31 1.19 16 30 H 0.03 0.83 7.96 -51.93 -0.41 0.41 16 31 H 0.04 0.88 6.69 -51.92 -0.35 0.53 16 32 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.57 7.37 -51.93 -0.38 1.19 16 35 H 0.34 3.81 9.08 -39.29 -0.36 3.45 16 36 H 0.35 5.08 8.16 -39.29 -0.32 4.76 16 37 H 0.08 1.30 8.09 -51.92 -0.42 0.88 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -27.37 304.69 -7.19 -34.56 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.11 Total: 10.46 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.01 Total: -5.15 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.30 Total: -47.55 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.07 Total: -12.29 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.37 -7.19 -34.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703584683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.455 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds