Wall clock time and date at job start Mon Mar 30 2020 04:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.46496 * 119.99880 * 270.00471 * 3 2 1 5 5 C 1.50703 * 109.47077 * 269.99336 * 4 3 2 6 6 H 1.08005 * 119.99703 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00292 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00272 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47206 * 59.99702 * 9 7 5 11 11 H 1.48496 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46839 * 299.99831 * 9 7 5 13 13 C 1.34777 * 119.99854 * 89.99731 * 3 2 1 14 14 O 1.21274 * 120.00135 * 180.27973 * 13 3 2 15 15 C 1.50706 * 119.99766 * 0.02562 * 13 3 2 16 16 H 1.08993 * 112.85019 * 311.19527 * 15 13 3 17 17 C 1.53781 * 113.61233 * 82.50224 * 15 13 3 18 18 C 1.53784 * 87.07940 * 139.97721 * 17 15 13 19 19 H 1.08997 * 113.68723 * 89.12804 * 18 17 15 20 20 N 1.46896 * 113.61337 * 220.01461 * 18 17 15 21 21 C 1.46905 * 111.00282 * 252.49753 * 20 18 17 22 22 C 1.53776 * 87.08108 * 334.56603 * 18 17 15 23 23 H 1.08994 * 109.47070 * 299.99586 * 1 2 3 24 24 H 1.08996 * 109.47306 * 59.99842 * 1 2 3 25 25 H 1.08998 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46783 * 240.00151 * 2 1 3 27 27 H 1.08996 * 109.47306 * 120.00158 * 2 1 3 28 28 H 1.08997 * 109.47682 * 29.99532 * 4 3 2 29 29 H 1.09004 * 109.47271 * 149.99629 * 4 3 2 30 30 H 0.96999 * 119.99754 * 180.02562 * 8 7 5 31 31 H 1.08997 * 113.61112 * 254.52644 * 17 15 13 32 32 H 1.08993 * 113.61733 * 25.42880 * 17 15 13 33 33 H 1.00903 * 110.99752 * 128.54426 * 20 18 17 34 34 H 1.09001 * 109.47063 * 179.97438 * 21 20 18 35 35 H 1.08996 * 109.46828 * 300.00297 * 21 20 18 36 36 H 1.09004 * 109.46560 * 60.00397 * 21 20 18 37 37 H 1.08999 * 113.61794 * 270.88299 * 22 18 17 38 38 H 1.09000 * 113.61218 * 139.98031 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6176 9 14 5.9134 2.0965 -3.4171 10 1 6.1403 0.6398 -3.5954 11 1 6.1608 2.7966 -4.7030 12 1 6.8412 2.6189 -2.3820 13 6 2.2430 2.0166 1.1672 14 8 2.6424 3.1616 1.1673 15 6 1.9922 1.3059 2.4723 16 1 1.0184 0.8178 2.5082 17 6 3.1540 0.4001 2.9135 18 6 2.8968 0.9004 4.3448 19 1 2.1711 0.3010 4.8944 20 7 4.1254 1.1519 5.1099 21 6 4.3251 0.1222 6.1384 22 6 2.2963 2.1660 3.7103 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.5817 1.6878 -2.0284 29 1 2.0955 3.1411 -1.1384 30 1 3.6753 3.5170 -4.4435 31 1 2.9537 -0.6630 2.7800 32 1 4.1209 0.7033 2.5121 33 1 4.1142 2.0742 5.5189 34 1 5.2417 0.3322 6.6896 35 1 3.4787 0.1257 6.8252 36 1 4.4034 -0.8557 5.6631 37 1 3.0287 2.9521 3.5267 38 1 1.4036 2.5284 4.2201 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703610996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:02 Heat of formation + Delta-G solvation = -19.131396 kcal Electronic energy + Delta-G solvation = -17776.758395 eV Core-core repulsion = 15040.707538 eV Total energy + Delta-G solvation = -2736.050858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.96381 -37.65259 -35.18453 -33.95726 -32.67933 -30.03254 -27.70170 -26.08921 -25.53168 -24.04037 -22.92412 -22.00121 -19.61175 -18.18398 -16.76185 -16.32765 -15.77208 -15.39362 -15.09572 -14.54153 -14.26440 -13.90615 -13.39047 -13.25097 -12.85558 -12.40163 -12.23670 -12.02590 -11.97164 -11.60094 -11.55814 -11.16463 -10.97524 -10.78463 -10.75643 -10.54840 -10.43506 -10.24236 -10.06388 -9.58471 -8.73778 -8.50459 -8.37859 -7.57214 -5.98860 -4.03236 3.35824 3.39862 3.42484 3.50343 3.97000 4.27516 4.50456 4.63699 4.74528 4.99350 5.02277 5.25717 5.28608 5.32075 5.36629 5.45723 5.53646 5.71113 5.74076 5.83190 5.87099 5.93376 6.11359 6.20269 6.26977 6.29192 6.43852 6.54453 7.05609 7.15421 7.27950 7.51349 7.64217 7.98285 8.30255 8.53655 8.96902 9.20805 9.61872 11.09180 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.006518 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.424977 B = 4294.520310 C = 4894.460447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.517 3.483 14 O -0.542 6.542 15 C -0.137 4.137 16 H 0.104 0.896 17 C -0.105 4.105 18 C 0.056 3.944 19 H 0.072 0.928 20 N -0.682 5.682 21 C 0.028 3.972 22 C -0.119 4.119 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.343 0.657 34 H 0.065 0.935 35 H 0.019 0.981 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -8.262 15.093 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.304 3.696 14 O -0.420 6.420 15 C -0.159 4.159 16 H 0.122 0.878 17 C -0.144 4.144 18 C -0.054 4.054 19 H 0.090 0.910 20 N -0.313 5.313 21 C -0.122 4.122 22 C -0.158 4.158 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.570 -7.856 14.434 16.817 hybrid contribution 0.199 -0.041 0.185 0.275 sum -3.370 -7.897 14.619 16.954 Atomic orbital electron populations 1.22227 0.97035 1.01253 1.02227 1.21400 0.93291 0.84403 1.02626 1.48213 1.63636 1.13187 1.07712 1.19244 0.96172 0.93603 0.78328 1.21415 0.96961 1.31729 1.06186 0.92533 1.24929 0.97781 0.94967 0.96420 1.69928 1.35695 1.33556 1.14375 0.86574 0.84938 0.78221 0.77789 1.20281 1.21217 1.20169 1.20065 0.78137 0.86636 0.84799 1.90644 1.46162 1.18070 1.87139 1.22603 1.00388 0.99140 0.93816 0.87817 1.22958 0.98649 0.98224 0.94571 1.23073 0.90250 0.98116 0.93969 0.90998 1.60489 1.37273 1.05950 1.27572 1.22231 0.99992 0.96418 0.93563 1.23093 1.01243 0.96822 0.94613 0.93130 0.92125 0.92301 0.90179 0.91572 0.95165 0.94020 0.92743 0.91428 0.88643 0.83845 0.91663 0.96278 0.91760 0.87883 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.17 37.16 0.38 -1.95 16 2 C 0.11 1.77 5.82 -4.04 -0.02 1.74 16 3 N -0.60 -12.90 2.46 -175.06 -0.43 -13.33 16 4 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 5 C -0.52 -15.18 9.39 -34.44 -0.32 -15.50 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.52 11.03 7.20 -10.98 -0.08 10.95 16 14 O -0.54 -14.06 15.48 5.56 0.09 -13.97 16 15 C -0.14 -2.10 2.79 -90.96 -0.25 -2.36 16 16 H 0.10 1.34 6.88 -51.93 -0.36 0.98 16 17 C -0.11 -1.48 6.71 -25.92 -0.17 -1.66 16 18 C 0.06 0.67 4.14 -66.90 -0.28 0.39 16 19 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 20 N -0.68 -7.95 6.91 -113.14 -0.78 -8.73 16 21 C 0.03 0.26 10.54 60.07 0.63 0.89 16 22 C -0.12 -1.66 6.97 -25.92 -0.18 -1.84 16 23 H 0.05 0.66 7.24 -51.93 -0.38 0.28 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 27 H 0.07 0.93 5.79 -51.93 -0.30 0.63 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 32 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 33 H 0.34 3.63 8.63 -39.29 -0.34 3.29 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.15 8.13 -51.93 -0.42 -0.27 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 1.69 7.44 -51.93 -0.39 1.31 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -33.24 311.49 -7.43 -40.67 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.29 Total: 0.86 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.42 Total: -1.10 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.48 Total: -48.42 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.24 -7.43 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703610996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.544 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds