Wall clock time and date at job start Mon Mar 30 2020 04:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.46496 * 119.99880 * 270.00471 * 3 2 1 5 5 C 1.50703 * 109.47077 * 269.99336 * 4 3 2 6 6 H 1.08005 * 119.99703 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00292 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00272 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47206 * 59.99702 * 9 7 5 11 11 H 1.48496 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46839 * 299.99831 * 9 7 5 13 13 C 1.34777 * 119.99854 * 89.99731 * 3 2 1 14 14 O 1.21274 * 120.00135 * 180.27973 * 13 3 2 15 15 C 1.50706 * 119.99766 * 0.02562 * 13 3 2 16 16 H 1.08993 * 112.85019 * 311.19527 * 15 13 3 17 17 C 1.53781 * 113.61233 * 82.50224 * 15 13 3 18 18 C 1.53784 * 87.07940 * 139.97721 * 17 15 13 19 19 H 1.08997 * 113.68723 * 89.12804 * 18 17 15 20 20 N 1.46896 * 113.61337 * 220.01461 * 18 17 15 21 21 C 1.46905 * 111.00282 * 252.49753 * 20 18 17 22 22 C 1.53776 * 87.08108 * 334.56603 * 18 17 15 23 23 H 1.08994 * 109.47070 * 299.99586 * 1 2 3 24 24 H 1.08996 * 109.47306 * 59.99842 * 1 2 3 25 25 H 1.08998 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46783 * 240.00151 * 2 1 3 27 27 H 1.08996 * 109.47306 * 120.00158 * 2 1 3 28 28 H 1.08997 * 109.47682 * 29.99532 * 4 3 2 29 29 H 1.09004 * 109.47271 * 149.99629 * 4 3 2 30 30 H 0.96999 * 119.99754 * 180.02562 * 8 7 5 31 31 H 1.08997 * 113.61112 * 254.52644 * 17 15 13 32 32 H 1.08993 * 113.61733 * 25.42880 * 17 15 13 33 33 H 1.00903 * 110.99752 * 128.54426 * 20 18 17 34 34 H 1.09001 * 109.47063 * 179.97438 * 21 20 18 35 35 H 1.08996 * 109.46828 * 300.00297 * 21 20 18 36 36 H 1.09004 * 109.46560 * 60.00397 * 21 20 18 37 37 H 1.08999 * 113.61794 * 270.88299 * 22 18 17 38 38 H 1.09000 * 113.61218 * 139.98031 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6176 9 14 5.9134 2.0965 -3.4171 10 1 6.1403 0.6398 -3.5954 11 1 6.1608 2.7966 -4.7030 12 1 6.8412 2.6189 -2.3820 13 6 2.2430 2.0166 1.1672 14 8 2.6424 3.1616 1.1673 15 6 1.9922 1.3059 2.4723 16 1 1.0184 0.8178 2.5082 17 6 3.1540 0.4001 2.9135 18 6 2.8968 0.9004 4.3448 19 1 2.1711 0.3010 4.8944 20 7 4.1254 1.1519 5.1099 21 6 4.3251 0.1222 6.1384 22 6 2.2963 2.1660 3.7103 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.5817 1.6878 -2.0284 29 1 2.0955 3.1411 -1.1384 30 1 3.6753 3.5170 -4.4435 31 1 2.9537 -0.6630 2.7800 32 1 4.1209 0.7033 2.5121 33 1 4.1142 2.0742 5.5189 34 1 5.2417 0.3322 6.6896 35 1 3.4787 0.1257 6.8252 36 1 4.4034 -0.8557 5.6631 37 1 3.0287 2.9521 3.5267 38 1 1.4036 2.5284 4.2201 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703610996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:02 Heat of formation + Delta-G solvation = -43.102188 kcal Electronic energy + Delta-G solvation = -17777.797847 eV Core-core repulsion = 15040.707538 eV Total energy + Delta-G solvation = -2737.090309 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36741 -39.02377 -36.91457 -35.08746 -34.67168 -31.60508 -29.48072 -27.39136 -26.65037 -25.43843 -24.45009 -23.47389 -20.75781 -19.71280 -18.61283 -18.13625 -17.25079 -16.66266 -16.30604 -16.16303 -15.81447 -15.23748 -14.71138 -14.44156 -14.21295 -14.10161 -13.55054 -13.40274 -13.27169 -13.11283 -12.87532 -12.77198 -12.65651 -12.43243 -12.20604 -11.99656 -11.84856 -11.74491 -11.66622 -11.29886 -10.64883 -10.44131 -9.41106 -9.34512 -8.22660 -6.37780 1.34881 1.39640 1.46967 1.85814 2.31778 2.47357 3.06243 3.34025 3.56182 3.61365 3.86291 3.93184 4.07316 4.23829 4.42846 4.50229 4.58772 4.65893 4.70085 4.79108 4.86815 4.95572 5.00717 5.04660 5.06144 5.08711 5.18438 5.22136 5.36748 5.41160 5.58757 5.88816 6.07015 6.20810 6.46683 6.70003 6.85237 7.28422 7.53651 8.84185 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.006518 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.424977 B = 4294.520310 C = 4894.460447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.602 5.602 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.505 3.495 14 O -0.603 6.603 15 C -0.129 4.129 16 H 0.142 0.858 17 C -0.107 4.107 18 C 0.077 3.923 19 H 0.106 0.894 20 N -0.704 5.704 21 C 0.028 3.972 22 C -0.122 4.122 23 H 0.062 0.938 24 H 0.036 0.964 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.021 0.979 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.347 0.653 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -10.830 16.897 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.332 5.332 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.201 1.201 12 H -0.205 1.205 13 C 0.294 3.706 14 O -0.485 6.485 15 C -0.150 4.150 16 H 0.159 0.841 17 C -0.146 4.146 18 C -0.033 4.033 19 H 0.123 0.877 20 N -0.336 5.336 21 C -0.121 4.121 22 C -0.161 4.161 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.039 0.961 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.809 -10.476 16.258 19.712 hybrid contribution 0.253 0.783 -0.374 0.903 sum -3.556 -9.694 15.884 18.945 Atomic orbital electron populations 1.22161 0.94476 1.03554 1.01688 1.21735 0.95353 0.81399 1.03707 1.48274 1.63691 1.15099 1.06176 1.18681 0.95255 0.91392 0.80720 1.21676 0.97895 1.32012 1.06556 0.93104 1.25864 1.02439 0.94432 0.96385 1.70050 1.37822 1.34190 1.14805 0.85483 0.78951 0.79110 0.77371 1.18350 1.20098 1.20493 1.21245 0.76587 0.86213 0.86526 1.90605 1.48748 1.20966 1.88169 1.22718 1.02662 0.99551 0.90104 0.84085 1.22948 0.96096 0.99449 0.96061 1.22947 0.90750 0.96467 0.93092 0.87689 1.60430 1.37321 1.06960 1.28882 1.22274 1.01065 0.95519 0.93214 1.23065 1.01557 0.96931 0.94519 0.91923 0.94469 0.88474 0.91346 0.88214 0.96108 0.98886 0.92386 0.88538 0.92419 0.83352 0.90999 0.94626 0.91737 0.91387 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.17 71.98 0.73 -3.30 16 2 C 0.10 3.17 5.82 86.38 0.50 3.67 16 3 N -0.60 -26.64 2.46 -826.15 -2.03 -28.67 16 4 C 0.26 14.74 5.16 85.63 0.44 15.18 16 5 C -0.54 -32.57 9.39 25.60 0.24 -32.33 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 9 Si 0.97 46.29 29.54 68.60 2.03 48.32 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 13 C 0.50 22.04 7.20 87.66 0.63 22.67 16 14 O -0.60 -33.12 15.48 -3.01 -0.05 -33.17 16 15 C -0.13 -3.71 2.79 -11.01 -0.03 -3.74 16 16 H 0.14 3.03 6.88 -2.39 -0.02 3.01 16 17 C -0.11 -2.76 6.71 31.12 0.21 -2.55 16 18 C 0.08 1.61 4.14 45.44 0.19 1.80 16 19 H 0.11 1.59 7.87 -2.39 -0.02 1.58 16 20 N -0.70 -14.94 6.91 -511.87 -3.54 -18.48 16 21 C 0.03 0.44 10.54 127.69 1.35 1.78 16 22 C -0.12 -3.23 6.97 31.12 0.22 -3.01 16 23 H 0.06 1.43 7.24 -2.39 -0.02 1.41 16 24 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 27 H 0.10 2.48 5.79 -2.39 -0.01 2.46 16 28 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 29 H -0.01 -0.46 7.42 -2.38 -0.02 -0.47 16 30 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.10 1.93 7.68 -2.39 -0.02 1.91 16 32 H 0.06 1.95 8.09 -2.39 -0.02 1.93 16 33 H 0.35 6.86 8.63 -89.69 -0.77 6.09 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.04 0.44 8.13 -2.39 -0.02 0.42 16 36 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.07 2.30 7.44 -2.39 -0.02 2.29 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -77.37 311.49 1.90 -75.47 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.26 Total: 12.96 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 4.94 Total: 1.09 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.28 Total: -104.67 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.05 Total: -33.17 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -77.37 1.90 -75.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703610996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.368 kcal (2) G-P(sol) polarization free energy of solvation -77.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds