Wall clock time and date at job start Mon Mar 30 2020 03:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46783 * 2 1 4 4 C 1.52996 * 109.46967 * 239.99845 * 2 1 3 5 5 C 1.50707 * 109.47172 * 62.73995 * 4 2 1 6 6 H 1.07997 * 119.99935 * 357.15485 * 5 4 2 7 7 C 1.37876 * 119.99887 * 177.15593 * 5 4 2 8 8 N 1.31510 * 120.00182 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99762 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47233 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47296 * 120.00099 * 9 7 5 12 12 H 1.48504 * 109.47033 * 240.00233 * 9 7 5 13 13 N 1.46900 * 109.47280 * 120.00194 * 2 1 3 14 14 C 1.46898 * 111.00216 * 168.34876 * 13 2 1 15 15 C 1.46906 * 110.99653 * 292.30091 * 13 2 1 16 16 H 1.08997 * 112.85258 * 311.20056 * 15 13 2 17 17 C 1.53782 * 113.61432 * 82.50566 * 15 13 2 18 18 C 1.53776 * 87.08285 * 139.97912 * 17 15 13 19 19 H 1.09004 * 113.69149 * 89.12450 * 18 17 15 20 20 C 1.50695 * 113.61370 * 220.01737 * 18 17 15 21 21 N 1.34781 * 120.00117 * 277.21684 * 20 18 17 22 22 O 1.21288 * 119.99819 * 97.49873 * 20 18 17 23 23 C 1.53780 * 87.08335 * 334.56725 * 18 17 15 24 24 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46887 * 299.99608 * 1 2 3 26 26 H 1.08998 * 109.47486 * 60.00189 * 1 2 3 27 27 H 1.09002 * 109.46942 * 182.73697 * 4 2 1 28 28 H 1.09003 * 109.47537 * 302.73744 * 4 2 1 29 29 H 0.97008 * 120.00000 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47480 * 175.77195 * 14 13 2 31 31 H 1.09000 * 109.47034 * 295.77739 * 14 13 2 32 32 H 1.09003 * 109.46780 * 55.77229 * 14 13 2 33 33 H 1.08998 * 113.61274 * 25.42733 * 17 15 13 34 34 H 1.09000 * 113.61149 * 254.52819 * 17 15 13 35 35 H 0.97003 * 119.99956 * 180.27524 * 21 20 18 36 36 H 0.96996 * 119.99950 * 0.28469 * 21 20 18 37 37 H 1.09001 * 113.61987 * 139.97974 * 23 18 17 38 38 H 1.09000 * 113.61331 * 270.89181 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5938 0.0273 -2.4788 6 1 0.9671 0.9013 -2.3811 7 6 1.9858 -0.4038 -3.7284 8 7 2.7495 -1.4679 -3.8473 9 14 1.4322 0.5236 -5.2525 10 1 0.5868 1.6765 -4.8506 11 1 2.6222 1.0168 -5.9913 12 1 0.6480 -0.3849 -6.1271 13 7 2.0197 -0.6925 1.1994 14 6 3.4616 -0.9567 1.1030 15 6 1.7045 0.0715 2.4139 16 1 1.9822 1.1227 2.3368 17 6 0.2730 -0.1532 2.9289 18 6 0.8670 -0.1512 4.3473 19 1 0.9150 0.8390 4.8006 20 6 0.2555 -1.1833 5.2592 21 7 -0.9052 -0.9206 5.8919 22 8 0.8106 -2.2485 5.4279 23 6 2.1915 -0.6009 3.7084 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 3.1289 -0.7640 -1.2250 28 1 1.6371 -1.7338 -1.2741 29 1 3.0250 -1.7714 -4.7265 30 1 3.8124 -1.4020 2.0340 31 1 3.6508 -1.6433 0.2778 32 1 3.9913 -0.0207 0.9257 33 1 -0.1512 -1.1131 2.6345 34 1 -0.3972 0.6842 2.7349 35 1 -1.2967 -1.5835 6.4821 36 1 -1.3491 -0.0688 5.7570 37 1 3.0702 -0.1250 4.1438 38 1 2.2917 -1.6833 3.6271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704306420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:03 Heat of formation + Delta-G solvation = -23.700691 kcal Electronic energy + Delta-G solvation = -17641.746157 eV Core-core repulsion = 14905.497159 eV Total energy + Delta-G solvation = -2736.248997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34116 -38.29625 -35.67903 -33.71434 -32.76572 -30.70255 -27.78889 -26.01220 -25.32351 -24.17981 -23.18937 -20.62407 -19.23248 -18.98733 -17.43664 -16.86340 -16.39880 -15.68226 -14.85843 -14.62493 -14.51512 -14.11270 -13.70246 -13.28868 -12.74798 -12.27277 -12.16935 -11.72615 -11.56741 -11.36905 -11.19640 -11.09542 -10.84125 -10.72592 -10.55605 -10.35705 -10.05168 -9.88375 -9.82987 -9.81063 -9.06383 -8.99265 -8.32055 -7.65978 -5.97746 -3.99107 2.57857 3.31700 3.39337 3.42511 3.44871 4.41205 4.48722 4.60456 4.67635 4.88205 4.98976 5.12793 5.38338 5.56085 5.74372 5.86171 5.90826 6.03375 6.09548 6.10954 6.20867 6.33026 6.41917 6.46151 6.62523 6.67213 6.76517 6.97314 7.15321 7.21308 7.60394 7.66975 7.86459 7.90482 8.10755 8.19419 8.46969 9.07361 9.64037 11.13768 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048055 B = 0.004794 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.527715 B = 5839.499211 C = 6115.075525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.085 3.915 3 H 0.026 0.974 4 C 0.027 3.973 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.527 5.527 14 C 0.027 3.973 15 C 0.057 3.943 16 H 0.061 0.939 17 C -0.102 4.102 18 C -0.146 4.146 19 H 0.109 0.891 20 C 0.530 3.470 21 N -0.859 5.859 22 O -0.542 6.542 23 C -0.107 4.107 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.259 0.741 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.019 0.981 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 4.958 16.916 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 H 0.044 0.956 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.252 5.252 14 C -0.121 4.121 15 C -0.053 4.053 16 H 0.079 0.921 17 C -0.141 4.141 18 C -0.168 4.168 19 H 0.127 0.873 20 C 0.315 3.685 21 N -0.422 5.422 22 O -0.418 6.418 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.037 0.963 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.228 0.772 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.146 3.767 16.788 17.958 hybrid contribution -0.275 1.488 -0.780 1.702 sum -5.420 5.255 16.008 17.699 Atomic orbital electron populations 1.21838 0.95496 1.01475 1.00101 1.21840 0.95115 0.95171 0.90097 0.95603 1.19258 0.96497 0.95912 0.89394 1.21251 1.30992 1.12116 0.91047 0.92595 1.24991 0.95241 0.95118 0.99029 1.69979 1.35945 1.24007 1.23408 0.86580 0.78426 0.79891 0.83354 1.19803 1.21122 1.21042 1.62324 1.14886 1.46167 1.01798 1.22332 0.87649 1.00162 1.01925 1.23011 0.95967 0.95752 0.90535 0.92082 1.23028 0.97025 1.03248 0.90757 1.22711 1.00025 0.98515 0.95508 0.87263 1.20554 0.80365 0.88176 0.79396 1.43911 1.25849 1.22049 1.50368 1.90737 1.61849 1.25962 1.63221 1.22940 0.94403 1.02969 0.94177 0.92897 0.94506 0.91913 0.95996 0.95963 0.93113 0.92580 0.90157 0.96279 0.88624 0.90905 0.77224 0.77144 0.91535 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.50 37.16 0.32 -2.17 16 2 C 0.08 1.77 2.15 -67.71 -0.15 1.62 16 3 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 4 C 0.03 0.69 3.93 -27.88 -0.11 0.58 16 5 C -0.52 -14.35 8.45 -34.44 -0.29 -14.64 16 6 H 0.06 1.51 6.80 -52.49 -0.36 1.16 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.53 -9.63 4.63 -225.93 -1.05 -10.67 16 14 C 0.03 0.49 8.57 60.06 0.51 1.00 16 15 C 0.06 0.82 3.06 -66.89 -0.20 0.61 16 16 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 17 C -0.10 -1.27 5.22 -25.92 -0.14 -1.40 16 18 C -0.15 -1.57 4.15 -90.97 -0.38 -1.95 16 19 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 20 C 0.53 6.33 7.63 -10.99 -0.08 6.24 16 21 N -0.86 -6.51 8.87 31.22 0.28 -6.23 16 22 O -0.54 -8.96 16.74 5.55 0.09 -8.87 16 23 C -0.11 -1.41 5.78 -25.92 -0.15 -1.56 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.57 5.09 -51.93 -0.26 0.31 16 26 H 0.06 1.26 6.74 -51.93 -0.35 0.91 16 27 H 0.02 0.60 6.23 -51.93 -0.32 0.27 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.06 0.87 6.78 -51.93 -0.35 0.52 16 31 H 0.08 1.60 6.42 -51.93 -0.33 1.27 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 1.37 8.09 -51.93 -0.42 0.95 16 34 H 0.07 0.78 7.14 -51.93 -0.37 0.41 16 35 H 0.40 2.64 8.93 -40.82 -0.36 2.28 16 36 H 0.40 1.84 8.83 -40.82 -0.36 1.48 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.62 7.21 -51.93 -0.37 1.24 16 LS Contribution 300.70 15.07 4.53 4.53 Total: -1.00 -32.82 300.70 -7.15 -39.97 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.96 Total: 0.94 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.76 Total: -10.12 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.03 Total: -43.01 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.82 -7.15 -39.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704306420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.272 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds