Wall clock time and date at job start Mon Mar 30 2020 03:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46783 * 2 1 4 4 C 1.52996 * 109.46967 * 239.99845 * 2 1 3 5 5 C 1.50707 * 109.47172 * 62.73995 * 4 2 1 6 6 H 1.07997 * 119.99935 * 357.15485 * 5 4 2 7 7 C 1.37876 * 119.99887 * 177.15593 * 5 4 2 8 8 N 1.31510 * 120.00182 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99762 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47233 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47296 * 120.00099 * 9 7 5 12 12 H 1.48504 * 109.47033 * 240.00233 * 9 7 5 13 13 N 1.46900 * 109.47280 * 120.00194 * 2 1 3 14 14 C 1.46898 * 111.00216 * 168.34876 * 13 2 1 15 15 C 1.46906 * 110.99653 * 292.30091 * 13 2 1 16 16 H 1.08997 * 112.85258 * 311.20056 * 15 13 2 17 17 C 1.53782 * 113.61432 * 82.50566 * 15 13 2 18 18 C 1.53776 * 87.08285 * 139.97912 * 17 15 13 19 19 H 1.09004 * 113.69149 * 89.12450 * 18 17 15 20 20 C 1.50695 * 113.61370 * 220.01737 * 18 17 15 21 21 N 1.34781 * 120.00117 * 277.21684 * 20 18 17 22 22 O 1.21288 * 119.99819 * 97.49873 * 20 18 17 23 23 C 1.53780 * 87.08335 * 334.56725 * 18 17 15 24 24 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46887 * 299.99608 * 1 2 3 26 26 H 1.08998 * 109.47486 * 60.00189 * 1 2 3 27 27 H 1.09002 * 109.46942 * 182.73697 * 4 2 1 28 28 H 1.09003 * 109.47537 * 302.73744 * 4 2 1 29 29 H 0.97008 * 120.00000 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47480 * 175.77195 * 14 13 2 31 31 H 1.09000 * 109.47034 * 295.77739 * 14 13 2 32 32 H 1.09003 * 109.46780 * 55.77229 * 14 13 2 33 33 H 1.08998 * 113.61274 * 25.42733 * 17 15 13 34 34 H 1.09000 * 113.61149 * 254.52819 * 17 15 13 35 35 H 0.97003 * 119.99956 * 180.27524 * 21 20 18 36 36 H 0.96996 * 119.99950 * 0.28469 * 21 20 18 37 37 H 1.09001 * 113.61987 * 139.97974 * 23 18 17 38 38 H 1.09000 * 113.61331 * 270.89181 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5938 0.0273 -2.4788 6 1 0.9671 0.9013 -2.3811 7 6 1.9858 -0.4038 -3.7284 8 7 2.7495 -1.4679 -3.8473 9 14 1.4322 0.5236 -5.2525 10 1 0.5868 1.6765 -4.8506 11 1 2.6222 1.0168 -5.9913 12 1 0.6480 -0.3849 -6.1271 13 7 2.0197 -0.6925 1.1994 14 6 3.4616 -0.9567 1.1030 15 6 1.7045 0.0715 2.4139 16 1 1.9822 1.1227 2.3368 17 6 0.2730 -0.1532 2.9289 18 6 0.8670 -0.1512 4.3473 19 1 0.9150 0.8390 4.8006 20 6 0.2555 -1.1833 5.2592 21 7 -0.9052 -0.9206 5.8919 22 8 0.8106 -2.2485 5.4279 23 6 2.1915 -0.6009 3.7084 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 3.1289 -0.7640 -1.2250 28 1 1.6371 -1.7338 -1.2741 29 1 3.0250 -1.7714 -4.7265 30 1 3.8124 -1.4020 2.0340 31 1 3.6508 -1.6433 0.2778 32 1 3.9913 -0.0207 0.9257 33 1 -0.1512 -1.1131 2.6345 34 1 -0.3972 0.6842 2.7349 35 1 -1.2967 -1.5835 6.4821 36 1 -1.3491 -0.0688 5.7570 37 1 3.0702 -0.1250 4.1438 38 1 2.2917 -1.6833 3.6271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704306420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:03 Heat of formation + Delta-G solvation = -49.240857 kcal Electronic energy + Delta-G solvation = -17642.853661 eV Core-core repulsion = 14905.497159 eV Total energy + Delta-G solvation = -2737.356502 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.36997 -39.50271 -37.11114 -34.83350 -34.49051 -32.38594 -29.51177 -27.38051 -26.42108 -25.66222 -24.97369 -21.77572 -20.61882 -20.20678 -18.66127 -18.19314 -17.69195 -16.81751 -16.46580 -16.13864 -15.88832 -15.45532 -15.11523 -14.58354 -14.19102 -14.09014 -13.48093 -13.30699 -13.17623 -12.86696 -12.74444 -12.47490 -12.39834 -12.24602 -12.15247 -11.90196 -11.66833 -11.26647 -11.05232 -10.99020 -10.65075 -10.58340 -10.51493 -9.11934 -8.16670 -6.26313 1.40966 1.41294 1.54204 1.66885 2.42010 2.66410 3.16972 3.21566 3.54284 3.66866 3.81170 4.03655 4.28294 4.38217 4.40991 4.59313 4.65607 4.70464 4.73933 4.85754 4.92524 5.02315 5.08000 5.13481 5.20585 5.32049 5.42552 5.47193 5.54319 5.74135 5.83210 5.96602 6.13691 6.40065 6.48251 6.54457 6.90659 7.42118 7.42891 8.95840 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048055 B = 0.004794 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.527715 B = 5839.499211 C = 6115.075525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.095 3.905 3 H 0.024 0.976 4 C 0.035 3.965 5 C -0.529 4.529 6 H 0.064 0.936 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.540 5.540 14 C 0.033 3.967 15 C 0.047 3.953 16 H 0.076 0.924 17 C -0.099 4.099 18 C -0.125 4.125 19 H 0.151 0.849 20 C 0.525 3.475 21 N -0.835 5.835 22 O -0.597 6.597 23 C -0.110 4.110 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.050 0.950 27 H -0.004 1.004 28 H -0.015 1.015 29 H 0.261 0.739 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.405 0.595 36 H 0.419 0.581 37 H 0.082 0.918 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 7.474 18.166 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.013 4.013 3 H 0.042 0.958 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.083 0.917 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.788 3.212 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.264 5.264 14 C -0.115 4.115 15 C -0.061 4.061 16 H 0.094 0.906 17 C -0.137 4.137 18 C -0.147 4.147 19 H 0.168 0.832 20 C 0.311 3.689 21 N -0.399 5.399 22 O -0.478 6.478 23 C -0.148 4.148 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.014 0.986 28 H 0.003 0.997 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.236 0.764 36 H 0.250 0.750 37 H 0.101 0.899 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.815 6.327 18.071 20.323 hybrid contribution 0.236 0.672 -1.098 1.309 sum -6.579 6.999 16.973 19.502 Atomic orbital electron populations 1.21745 0.93763 1.01060 1.01414 1.21568 0.96399 0.94159 0.89136 0.95826 1.19091 0.94740 0.94438 0.91995 1.21657 1.30823 1.12348 0.91959 0.91743 1.25952 0.95241 0.95990 1.02697 1.70129 1.37333 1.25816 1.24313 0.85430 0.78147 0.78791 0.78867 1.18234 1.20656 1.20669 1.62274 1.14770 1.47044 1.02348 1.22222 0.88028 0.99512 1.01715 1.23234 0.97971 0.96041 0.88868 0.90619 1.22959 0.96065 1.03122 0.91517 1.22672 0.97574 0.99889 0.94529 0.83150 1.20778 0.81080 0.87529 0.79544 1.43719 1.24299 1.22976 1.48865 1.90727 1.63624 1.28101 1.65302 1.22868 0.96714 1.01174 0.94040 0.94175 0.90529 0.93144 0.98597 0.99667 0.92998 0.90344 0.93539 0.96228 0.90895 0.88107 0.76426 0.74960 0.89929 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 8.50 71.98 0.61 -3.89 16 2 C 0.10 3.97 2.15 44.91 0.10 4.07 16 3 H 0.02 1.00 8.06 -2.39 -0.02 0.98 16 4 C 0.03 1.86 3.93 29.85 0.12 1.98 16 5 C -0.53 -29.95 8.45 25.60 0.22 -29.73 16 6 H 0.06 3.46 6.80 -2.91 -0.02 3.44 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 8 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 N -0.54 -19.75 4.63 -868.70 -4.02 -23.77 16 14 C 0.03 1.23 8.57 127.69 1.09 2.32 16 15 C 0.05 1.27 3.06 45.44 0.14 1.40 16 16 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 17 C -0.10 -2.13 5.22 31.12 0.16 -1.97 16 18 C -0.13 -2.28 4.15 -11.02 -0.05 -2.32 16 19 H 0.15 1.57 8.14 -2.39 -0.02 1.55 16 20 C 0.52 11.38 7.63 87.65 0.67 12.05 16 21 N -0.84 -10.06 8.87 -173.53 -1.54 -11.60 16 22 O -0.60 -19.51 16.74 -3.05 -0.05 -19.56 16 23 C -0.11 -2.70 5.78 31.12 0.18 -2.52 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 2.17 5.09 -2.38 -0.01 2.15 16 26 H 0.05 1.96 6.74 -2.39 -0.02 1.94 16 27 H 0.00 -0.25 6.23 -2.39 -0.01 -0.26 16 28 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 29 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 30 H 0.08 2.48 6.78 -2.39 -0.02 2.46 16 31 H 0.05 1.99 6.42 -2.39 -0.02 1.97 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16 34 H 0.10 1.64 7.14 -2.39 -0.02 1.62 16 35 H 0.40 4.33 8.93 -92.71 -0.83 3.50 16 36 H 0.42 2.07 8.83 -92.71 -0.82 1.25 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.29 7.21 -2.39 -0.02 2.28 16 Total: -1.00 -74.48 300.70 -0.18 -74.66 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -0.58 Total: 9.62 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 3.70 Total: -18.23 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -5.28 Total: -92.92 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.48 -0.18 -74.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704306420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.421 kcal (2) G-P(sol) polarization free energy of solvation -74.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds