Wall clock time and date at job start Mon Mar 30 2020 03:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47249 * 2 1 4 4 C 1.52996 * 109.47346 * 120.00172 * 2 1 3 5 5 C 1.50701 * 109.46962 * 294.77128 * 4 2 1 6 6 H 1.07991 * 120.00256 * 354.86951 * 5 4 2 7 7 C 1.37880 * 119.99761 * 175.15028 * 5 4 2 8 8 N 1.31515 * 119.99791 * 359.72346 * 7 5 4 9 9 Si 1.86801 * 119.99814 * 179.72559 * 7 5 4 10 10 H 1.48498 * 109.47073 * 90.00152 * 9 7 5 11 11 H 1.48504 * 109.46970 * 209.99829 * 9 7 5 12 12 H 1.48492 * 109.47267 * 329.99759 * 9 7 5 13 13 N 1.46901 * 109.46895 * 240.00234 * 2 1 3 14 14 C 1.46901 * 111.00161 * 188.47320 * 13 2 1 15 15 C 1.46905 * 111.00199 * 64.51868 * 13 2 1 16 16 H 1.08995 * 112.84972 * 319.67028 * 15 13 2 17 17 C 1.53787 * 113.61192 * 90.86233 * 15 13 2 18 18 C 1.53953 * 87.01718 * 139.95337 * 17 15 13 19 19 H 1.08998 * 113.53759 * 89.18994 * 18 17 15 20 20 C 1.50700 * 113.74449 * 220.05772 * 18 17 15 21 21 N 1.34776 * 119.99964 * 277.59978 * 20 18 17 22 22 O 1.21280 * 120.00187 * 97.59254 * 20 18 17 23 23 C 1.53775 * 113.61521 * 188.46704 * 15 13 2 24 24 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46913 * 299.99585 * 1 2 3 26 26 H 1.08996 * 109.47358 * 60.00177 * 1 2 3 27 27 H 1.09004 * 109.46817 * 174.77076 * 4 2 1 28 28 H 1.09002 * 109.47149 * 54.77393 * 4 2 1 29 29 H 0.97005 * 119.99840 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47202 * 67.63629 * 14 13 2 31 31 H 1.09001 * 109.47490 * 187.64010 * 14 13 2 32 32 H 1.09002 * 109.47259 * 307.64209 * 14 13 2 33 33 H 1.08999 * 113.61349 * 254.53071 * 17 15 13 34 34 H 1.09004 * 113.61484 * 25.43280 * 17 15 13 35 35 H 0.97008 * 119.99607 * 359.97438 * 21 20 18 36 36 H 0.96999 * 120.00456 * 179.97438 * 21 20 18 37 37 H 1.09005 * 113.61938 * 334.57613 * 23 15 13 38 38 H 1.09006 * 113.61386 * 105.38551 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6462 0.0600 2.4762 6 1 1.1613 1.0193 2.3730 7 6 1.9103 -0.4476 3.7307 8 7 2.5009 -1.6159 3.8564 9 14 1.4290 0.5242 5.2517 10 1 0.0518 0.1507 5.6625 11 1 2.3749 0.2177 6.3548 12 1 1.4780 1.9768 4.9471 13 7 2.0196 -0.6925 -1.1995 14 6 3.4740 -0.8896 -1.1368 15 6 1.6388 0.0332 -2.4187 16 1 0.6263 0.4342 -2.3738 17 6 2.6880 1.0597 -2.8776 18 6 2.3883 0.6026 -4.3168 19 1 1.5810 1.1604 -4.7915 20 6 3.6141 0.4931 -5.1865 21 7 4.1196 1.5925 -5.7800 22 8 4.1459 -0.5842 -5.3521 23 6 1.9388 -0.7389 -3.7142 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.1260 -0.8030 1.2035 28 1 1.6023 -1.7184 1.2972 29 1 2.6870 -1.9728 4.7390 30 1 3.7107 -1.5985 -0.3434 31 1 3.8293 -1.2798 -2.0906 32 1 3.9612 0.0632 -0.9299 33 1 2.4040 2.0931 -2.6786 34 1 3.7004 0.8268 -2.5474 35 1 3.6941 2.4542 -5.6477 36 1 4.9089 1.5222 -6.3395 37 1 2.7459 -1.4646 -3.6132 38 1 1.0510 -1.1568 -4.1890 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704306636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:05 Heat of formation + Delta-G solvation = -46.062475 kcal Electronic energy + Delta-G solvation = -17675.481413 eV Core-core repulsion = 14938.262736 eV Total energy + Delta-G solvation = -2737.218677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55141 -39.59267 -37.06081 -34.78998 -34.51026 -32.16495 -29.49312 -27.43806 -26.60685 -25.75846 -25.07553 -21.83846 -20.61717 -19.81945 -18.82451 -18.23433 -17.73570 -16.78106 -16.54371 -16.14882 -15.88035 -15.46328 -15.16763 -14.55371 -14.31165 -14.04584 -13.60831 -13.31887 -13.07038 -12.87664 -12.77805 -12.60797 -12.45464 -12.15152 -12.00192 -11.78600 -11.67939 -11.44234 -11.15093 -10.94957 -10.76883 -10.63518 -10.49997 -9.02104 -8.15728 -6.25458 1.41661 1.42876 1.53411 1.62379 2.42479 2.63326 3.13849 3.18057 3.55278 3.63592 3.93839 3.98348 4.29240 4.35761 4.36603 4.44729 4.66872 4.68816 4.77837 4.78776 4.87836 4.99185 5.02959 5.14616 5.16801 5.29871 5.39981 5.50994 5.53851 5.77204 5.84052 5.92579 6.15535 6.38685 6.46512 6.50007 6.91495 7.38378 7.42760 8.96523 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047352 B = 0.004734 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.173491 B = 5912.681472 C = 5989.926162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.097 3.903 3 H 0.027 0.973 4 C 0.035 3.965 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.261 1.261 13 N -0.538 5.538 14 C 0.036 3.964 15 C 0.056 3.944 16 H 0.122 0.878 17 C -0.155 4.155 18 C -0.120 4.120 19 H 0.151 0.849 20 C 0.523 3.477 21 N -0.836 5.836 22 O -0.595 6.595 23 C -0.113 4.113 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.071 0.929 27 H -0.009 1.009 28 H -0.010 1.010 29 H 0.261 0.739 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.418 0.582 36 H 0.405 0.595 37 H 0.069 0.931 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 10.366 -17.843 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.011 4.011 3 H 0.045 0.955 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.185 1.185 13 N -0.261 5.261 14 C -0.112 4.112 15 C -0.053 4.053 16 H 0.140 0.860 17 C -0.195 4.195 18 C -0.142 4.142 19 H 0.169 0.831 20 C 0.309 3.691 21 N -0.399 5.399 22 O -0.476 6.476 23 C -0.151 4.151 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.009 0.991 28 H 0.008 0.992 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.666 9.045 -17.715 19.960 hybrid contribution 0.771 0.997 0.986 1.600 sum -0.895 10.042 -16.729 19.532 Atomic orbital electron populations 1.21656 0.93738 1.01250 1.01225 1.21537 0.96168 0.94346 0.89026 0.95506 1.19078 0.94426 0.94824 0.91930 1.21592 1.38416 1.05006 0.91780 0.91871 1.25941 0.95228 0.95970 1.02653 1.70126 1.43661 1.19679 1.24088 0.85490 0.78067 0.79278 0.78472 1.19811 1.21180 1.18545 1.61956 1.12442 1.49294 1.02358 1.22262 0.88339 0.99458 1.01138 1.23421 0.99691 0.93434 0.88737 0.85996 1.23616 1.00775 1.01409 0.93680 1.22639 0.96556 1.00544 0.94417 0.83139 1.20831 0.85595 0.83661 0.79040 1.43737 1.33547 1.10800 1.51823 1.90725 1.63069 1.29938 1.63867 1.22960 1.01703 0.95766 0.94699 0.93892 0.92815 0.91059 0.99081 0.99169 0.93003 0.93587 0.91168 0.95746 0.88714 0.90849 0.75023 0.76415 0.91204 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 8.97 71.98 0.65 -3.77 16 2 C 0.10 3.98 2.07 44.91 0.09 4.08 16 3 H 0.03 1.11 8.13 -2.39 -0.02 1.09 16 4 C 0.03 1.86 4.11 29.85 0.12 1.98 16 5 C -0.53 -29.77 8.31 25.60 0.21 -29.55 16 6 H 0.06 3.36 7.27 -2.92 -0.02 3.34 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 9 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 N -0.54 -19.49 4.74 -868.71 -4.12 -23.61 16 14 C 0.04 1.34 7.31 127.69 0.93 2.28 16 15 C 0.06 1.47 3.68 45.44 0.17 1.64 16 16 H 0.12 2.81 6.07 -2.39 -0.01 2.79 16 17 C -0.16 -3.39 6.82 31.18 0.21 -3.17 16 18 C -0.12 -2.19 4.14 -10.96 -0.05 -2.24 16 19 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 20 C 0.52 11.32 7.64 87.66 0.67 11.99 16 21 N -0.84 -10.25 8.87 -173.53 -1.54 -11.79 16 22 O -0.60 -19.21 16.74 -3.03 -0.05 -19.26 16 23 C -0.11 -2.79 6.88 31.12 0.21 -2.58 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 2.07 7.08 -2.39 -0.02 2.05 16 26 H 0.07 2.00 6.27 -2.39 -0.01 1.99 16 27 H -0.01 -0.52 6.17 -2.39 -0.01 -0.54 16 28 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 30 H 0.05 1.97 6.58 -2.39 -0.02 1.95 16 31 H 0.07 2.41 6.12 -2.39 -0.01 2.39 16 32 H 0.02 0.88 6.86 -2.39 -0.02 0.86 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.93 5.59 -2.39 -0.01 1.92 16 35 H 0.42 2.26 8.83 -92.70 -0.82 1.44 16 36 H 0.40 4.38 8.93 -92.71 -0.83 3.56 16 37 H 0.07 2.17 5.84 -2.38 -0.01 2.16 16 38 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -73.35 298.65 -0.28 -73.63 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -0.57 Total: 11.16 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 3.69 Total: -18.92 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -5.37 Total: -92.85 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -73.35 -0.28 -73.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704306636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.564 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds