Wall clock time and date at job start Mon Mar 30 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46875 * 2 1 4 4 N 1.46495 * 109.47368 * 120.00221 * 2 1 3 5 5 C 1.34777 * 119.99744 * 85.00080 * 4 2 1 6 6 O 1.21281 * 120.00264 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99761 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46931 * 299.99724 * 7 5 4 9 9 C 1.52998 * 109.47228 * 59.99657 * 7 5 4 10 10 N 1.46500 * 109.46849 * 180.02562 * 7 5 4 11 11 C 1.36934 * 119.99959 * 121.56053 * 10 7 5 12 12 H 1.08007 * 119.99791 * 212.87454 * 11 10 7 13 13 C 1.38808 * 120.00460 * 32.87400 * 11 10 7 14 14 N 1.31622 * 119.99378 * 17.33205 * 13 11 10 15 15 Si 1.86797 * 120.00454 * 197.32993 * 13 11 10 16 16 H 1.48503 * 109.46982 * 59.99653 * 15 13 11 17 17 H 1.48491 * 109.47328 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47106 * 300.00285 * 15 13 11 19 19 C 1.46507 * 119.99809 * 301.55496 * 10 7 5 20 20 C 1.53001 * 117.49663 * 193.78617 * 19 10 7 21 21 C 1.52997 * 117.49800 * 125.12784 * 19 10 7 22 22 H 1.09006 * 109.46968 * 299.99407 * 1 2 3 23 23 H 1.08994 * 109.47552 * 60.00006 * 1 2 3 24 24 H 1.09004 * 109.46634 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46466 * 240.00472 * 2 1 3 26 26 H 1.08999 * 109.47068 * 60.00183 * 3 2 1 27 27 H 1.09003 * 109.46669 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47026 * 300.00316 * 3 2 1 29 29 H 0.96999 * 120.00158 * 264.99958 * 4 2 1 30 30 H 1.09003 * 109.47109 * 60.00176 * 9 7 5 31 31 H 1.08996 * 109.47088 * 179.97438 * 9 7 5 32 32 H 1.08990 * 109.47478 * 300.00236 * 9 7 5 33 33 H 0.97005 * 119.99558 * 184.98443 * 14 13 11 34 34 H 1.08994 * 115.55382 * 339.45537 * 19 10 7 35 35 H 1.09007 * 117.49948 * 359.97438 * 20 19 10 36 36 H 1.09002 * 117.50115 * 145.02611 * 20 19 10 37 37 H 1.09003 * 117.50097 * 214.97952 * 21 19 10 38 38 H 1.09004 * 117.49891 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -2.0322 1.1942 6 8 1.8583 -2.6678 0.2024 7 6 2.6491 -2.7428 2.4249 8 1 3.6482 -2.3827 2.6702 9 6 1.7046 -2.4637 3.5957 10 7 2.6990 -4.1846 2.1700 11 6 3.8834 -4.8609 2.2926 12 1 4.0912 -5.7063 1.6534 13 6 4.8170 -4.4600 3.2384 14 7 4.4532 -3.6753 4.2306 15 14 6.5894 -5.0340 3.1032 16 1 7.1628 -4.5705 1.8141 17 1 7.3794 -4.4703 4.2270 18 1 6.6350 -6.5172 3.1603 19 6 1.4819 -4.9028 1.7840 20 6 1.5141 -6.4313 1.8452 21 6 1.5233 -5.7187 0.4904 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 2.2492 -0.1824 1.9894 30 1 0.7054 -2.8238 3.3504 31 1 2.0673 -2.9779 4.4856 32 1 1.6678 -1.3910 3.7852 33 1 5.1185 -3.3365 4.8499 34 1 0.5440 -4.4087 2.0375 35 1 2.4411 -6.9025 2.1722 36 1 0.5973 -6.9427 2.1385 37 1 0.6125 -5.7617 -0.1070 38 1 2.4560 -5.7208 -0.0737 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706713937.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:03 Heat of formation + Delta-G solvation = 5.189064 kcal Electronic energy + Delta-G solvation = -18379.459934 eV Core-core repulsion = 15644.463690 eV Total energy + Delta-G solvation = -2734.996243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.15504 -36.87688 -35.24989 -33.72568 -31.73996 -30.51115 -28.41799 -27.10161 -24.23274 -23.36145 -21.20946 -20.99293 -20.02725 -19.20009 -16.73636 -16.16717 -15.55258 -14.85652 -14.44119 -14.35773 -13.96848 -13.43951 -13.09227 -12.71584 -12.57957 -12.21919 -11.99079 -11.94300 -11.62000 -11.24936 -11.12787 -10.97773 -10.77746 -10.76369 -10.57553 -10.43821 -10.24474 -9.86615 -9.47763 -9.13554 -8.66711 -8.49083 -8.38922 -6.55346 -5.85938 -3.35571 3.35849 3.41333 3.45009 3.63404 3.83064 4.45460 5.01380 5.10865 5.21894 5.24768 5.39179 5.42481 5.64782 5.76585 5.85731 5.93201 6.03053 6.05561 6.23024 6.30528 6.31652 6.40983 6.46600 6.49335 6.64503 6.67215 6.80751 7.09088 7.16797 7.23747 7.31081 7.44829 7.79296 8.20308 8.43446 9.04977 9.22860 9.76840 10.31307 11.17255 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.008686 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.315701 B = 3222.842657 C = 3871.222046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.158 4.158 4 N -0.740 5.740 5 C 0.487 3.513 6 O -0.533 6.533 7 C 0.178 3.822 8 H 0.117 0.883 9 C -0.140 4.140 10 N -0.532 5.532 11 C -0.250 4.250 12 H 0.066 0.934 13 C 0.008 3.992 14 N -0.895 5.895 15 Si 0.901 3.099 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.147 3.853 20 C -0.207 4.207 21 C -0.205 4.205 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.394 0.606 30 H 0.031 0.969 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 8.247 -3.343 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 C -0.216 4.216 4 N -0.395 5.395 5 C 0.274 3.726 6 O -0.407 6.407 7 C 0.066 3.934 8 H 0.134 0.866 9 C -0.199 4.199 10 N -0.248 5.248 11 C -0.379 4.379 12 H 0.084 0.916 13 C -0.191 4.191 14 N -0.538 5.538 15 Si 0.730 3.270 16 H -0.210 1.210 17 H -0.215 1.215 18 H -0.207 1.207 19 C 0.038 3.962 20 C -0.246 4.246 21 C -0.246 4.246 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.618 7.773 -3.866 10.340 hybrid contribution 1.030 0.065 0.220 1.055 sum -4.588 7.838 -3.646 9.786 Atomic orbital electron populations 1.22161 0.96107 1.02398 1.01138 1.20775 0.93635 0.92370 0.90287 1.22057 1.01628 0.95691 1.02184 1.46447 1.69431 1.07890 1.15760 1.22987 0.76170 0.81267 0.92192 1.90599 1.48897 1.65736 1.35498 1.20224 1.00763 0.84372 0.87994 0.86566 1.22051 0.97827 0.99042 1.00985 1.43011 1.03832 1.00660 1.77249 1.19041 0.93253 1.13347 1.12278 0.91587 1.25090 0.99552 1.00270 0.94152 1.70032 1.32470 1.37187 1.14080 0.86398 0.84836 0.78707 0.77060 1.21011 1.21535 1.20658 1.20733 0.90091 0.88443 0.96934 1.23214 1.01716 0.97783 1.01843 1.23141 1.01011 1.08766 0.91664 0.92882 0.92507 0.92148 0.90106 0.92363 0.92154 0.91670 0.77237 0.95004 0.89393 0.94618 0.93485 0.89995 0.88538 0.91003 0.91293 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 2 C 0.13 1.89 3.18 -67.93 -0.22 1.67 16 3 C -0.16 -1.66 9.38 37.16 0.35 -1.31 16 4 N -0.74 -12.00 4.97 -53.80 -0.27 -12.27 16 5 C 0.49 10.20 7.01 -10.98 -0.08 10.12 16 6 O -0.53 -12.73 14.55 5.56 0.08 -12.64 16 7 C 0.18 4.02 2.19 -69.08 -0.15 3.87 16 8 H 0.12 2.88 6.09 -51.93 -0.32 2.57 16 9 C -0.14 -2.82 8.96 37.16 0.33 -2.49 16 10 N -0.53 -13.37 2.50 -159.44 -0.40 -13.77 16 11 C -0.25 -6.77 8.27 -15.06 -0.12 -6.89 16 12 H 0.07 1.83 6.98 -52.48 -0.37 1.46 16 13 C 0.01 0.23 4.84 -17.43 -0.08 0.14 16 14 N -0.89 -23.89 10.45 55.49 0.58 -23.31 16 15 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.15 3.40 4.75 -67.93 -0.32 3.08 16 20 C -0.21 -4.43 9.79 -26.69 -0.26 -4.69 16 21 C -0.21 -4.49 9.72 -26.70 -0.26 -4.75 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.39 5.54 8.02 -40.82 -0.33 5.21 16 30 H 0.03 0.62 6.98 -51.93 -0.36 0.25 16 31 H 0.09 2.01 7.25 -51.93 -0.38 1.63 16 32 H 0.03 0.60 7.56 -51.93 -0.39 0.21 16 33 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 34 H 0.08 1.83 7.04 -51.93 -0.37 1.47 16 35 H 0.10 2.22 6.84 -51.92 -0.35 1.86 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.97 8.06 -51.93 -0.42 1.56 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -29.27 306.82 -7.07 -36.34 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.19 Total: 7.75 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.46 Total: -2.96 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.09 Total: -49.34 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.27 -7.07 -36.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706713937.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.526 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds