Wall clock time and date at job start Mon Mar 30 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46875 * 2 1 4 4 N 1.46495 * 109.47368 * 120.00221 * 2 1 3 5 5 C 1.34777 * 119.99744 * 85.00080 * 4 2 1 6 6 O 1.21281 * 120.00264 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99761 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46931 * 299.99724 * 7 5 4 9 9 C 1.52998 * 109.47228 * 59.99657 * 7 5 4 10 10 N 1.46500 * 109.46849 * 180.02562 * 7 5 4 11 11 C 1.36934 * 119.99959 * 121.56053 * 10 7 5 12 12 H 1.08007 * 119.99791 * 212.87454 * 11 10 7 13 13 C 1.38808 * 120.00460 * 32.87400 * 11 10 7 14 14 N 1.31622 * 119.99378 * 17.33205 * 13 11 10 15 15 Si 1.86797 * 120.00454 * 197.32993 * 13 11 10 16 16 H 1.48503 * 109.46982 * 59.99653 * 15 13 11 17 17 H 1.48491 * 109.47328 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47106 * 300.00285 * 15 13 11 19 19 C 1.46507 * 119.99809 * 301.55496 * 10 7 5 20 20 C 1.53001 * 117.49663 * 193.78617 * 19 10 7 21 21 C 1.52997 * 117.49800 * 125.12784 * 19 10 7 22 22 H 1.09006 * 109.46968 * 299.99407 * 1 2 3 23 23 H 1.08994 * 109.47552 * 60.00006 * 1 2 3 24 24 H 1.09004 * 109.46634 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46466 * 240.00472 * 2 1 3 26 26 H 1.08999 * 109.47068 * 60.00183 * 3 2 1 27 27 H 1.09003 * 109.46669 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47026 * 300.00316 * 3 2 1 29 29 H 0.96999 * 120.00158 * 264.99958 * 4 2 1 30 30 H 1.09003 * 109.47109 * 60.00176 * 9 7 5 31 31 H 1.08996 * 109.47088 * 179.97438 * 9 7 5 32 32 H 1.08990 * 109.47478 * 300.00236 * 9 7 5 33 33 H 0.97005 * 119.99558 * 184.98443 * 14 13 11 34 34 H 1.08994 * 115.55382 * 339.45537 * 19 10 7 35 35 H 1.09007 * 117.49948 * 359.97438 * 20 19 10 36 36 H 1.09002 * 117.50115 * 145.02611 * 20 19 10 37 37 H 1.09003 * 117.50097 * 214.97952 * 21 19 10 38 38 H 1.09004 * 117.49891 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -2.0322 1.1942 6 8 1.8583 -2.6678 0.2024 7 6 2.6491 -2.7428 2.4249 8 1 3.6482 -2.3827 2.6702 9 6 1.7046 -2.4637 3.5957 10 7 2.6990 -4.1846 2.1700 11 6 3.8834 -4.8609 2.2926 12 1 4.0912 -5.7063 1.6534 13 6 4.8170 -4.4600 3.2384 14 7 4.4532 -3.6753 4.2306 15 14 6.5894 -5.0340 3.1032 16 1 7.1628 -4.5705 1.8141 17 1 7.3794 -4.4703 4.2270 18 1 6.6350 -6.5172 3.1603 19 6 1.4819 -4.9028 1.7840 20 6 1.5141 -6.4313 1.8452 21 6 1.5233 -5.7187 0.4904 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 2.2492 -0.1824 1.9894 30 1 0.7054 -2.8238 3.3504 31 1 2.0673 -2.9779 4.4856 32 1 1.6678 -1.3910 3.7852 33 1 5.1185 -3.3365 4.8499 34 1 0.5440 -4.4087 2.0375 35 1 2.4411 -6.9025 2.1722 36 1 0.5973 -6.9427 2.1385 37 1 0.6125 -5.7617 -0.1070 38 1 2.4560 -5.7208 -0.0737 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706713937.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:03 Heat of formation + Delta-G solvation = -12.878825 kcal Electronic energy + Delta-G solvation = -18380.243416 eV Core-core repulsion = 15644.463690 eV Total energy + Delta-G solvation = -2735.779726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75993 -38.58998 -36.64884 -35.56636 -33.53421 -32.03059 -30.19240 -28.04056 -26.17666 -25.00048 -22.93636 -22.42943 -21.61405 -20.90209 -18.51785 -17.90050 -17.11897 -16.48824 -16.21254 -15.96229 -15.53987 -14.89235 -14.68214 -14.35400 -13.91451 -13.76392 -13.34206 -13.10972 -13.04134 -12.95678 -12.75565 -12.66867 -12.54050 -12.23092 -12.18802 -12.10037 -11.84039 -11.69410 -11.30006 -10.91038 -10.46688 -10.33519 -9.87556 -8.48636 -7.85689 -5.39344 1.46180 1.48114 1.55025 1.98218 2.38561 2.55121 3.18655 3.44651 3.55138 3.97678 4.20135 4.27499 4.32320 4.39044 4.49157 4.55428 4.72163 4.78087 4.78814 4.81679 4.94396 4.96274 4.96821 5.09330 5.10747 5.29937 5.33577 5.38191 5.43027 5.53908 5.64620 5.75896 5.80819 6.41020 6.78451 7.14596 7.56520 7.84820 8.33572 9.13227 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.008686 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.315701 B = 3222.842657 C = 3871.222046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.129 3.871 3 C -0.148 4.148 4 N -0.723 5.723 5 C 0.490 3.510 6 O -0.568 6.568 7 C 0.175 3.825 8 H 0.092 0.908 9 C -0.125 4.125 10 N -0.549 5.549 11 C -0.267 4.267 12 H 0.049 0.951 13 C -0.027 4.027 14 N -0.905 5.905 15 Si 0.955 3.045 16 H -0.288 1.288 17 H -0.284 1.284 18 H -0.281 1.281 19 C 0.129 3.871 20 C -0.194 4.194 21 C -0.198 4.198 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.029 0.971 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.407 0.593 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.255 0.745 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.289 9.799 -3.300 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.025 3.975 3 C -0.206 4.206 4 N -0.378 5.378 5 C 0.276 3.724 6 O -0.446 6.446 7 C 0.064 3.936 8 H 0.110 0.890 9 C -0.184 4.184 10 N -0.265 5.265 11 C -0.397 4.397 12 H 0.067 0.933 13 C -0.225 4.225 14 N -0.548 5.548 15 Si 0.783 3.217 16 H -0.214 1.214 17 H -0.209 1.209 18 H -0.206 1.206 19 C 0.020 3.980 20 C -0.232 4.232 21 C -0.238 4.238 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.243 0.757 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.387 9.374 -3.809 11.965 hybrid contribution 1.237 -0.371 0.173 1.303 sum -5.149 9.002 -3.636 10.990 Atomic orbital electron populations 1.22095 0.94851 1.00990 1.03175 1.20991 0.94623 0.93963 0.87959 1.21999 1.01376 0.93051 1.04169 1.46253 1.67946 1.06437 1.17141 1.22524 0.76183 0.82731 0.90999 1.90579 1.50771 1.66916 1.36305 1.20216 1.00155 0.83578 0.89611 0.89022 1.21862 0.97052 1.00884 0.98642 1.43152 1.03839 1.01760 1.77752 1.19073 0.94692 1.13622 1.12294 0.93303 1.25638 1.02166 1.00720 0.93987 1.70120 1.33050 1.37535 1.14139 0.85561 0.81235 0.78158 0.76732 1.21418 1.20918 1.20647 1.20901 0.89837 0.89350 0.97873 1.23199 1.02176 0.96785 1.01085 1.23039 1.00685 1.08532 0.91589 0.91219 0.90118 0.95213 0.92789 0.90504 0.92531 0.89544 0.75720 0.94599 0.92140 0.91273 0.93548 0.89225 0.90592 0.87820 0.89183 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.48 71.98 0.68 -2.92 16 2 C 0.13 3.40 3.18 44.99 0.14 3.54 16 3 C -0.15 -2.65 9.38 71.98 0.68 -1.97 16 4 N -0.72 -22.47 4.97 -442.52 -2.20 -24.66 16 5 C 0.49 20.44 7.01 87.66 0.61 21.05 16 6 O -0.57 -27.48 14.55 -3.03 -0.04 -27.52 16 7 C 0.17 7.97 2.19 44.25 0.10 8.06 16 8 H 0.09 4.62 6.09 -2.39 -0.01 4.60 16 9 C -0.13 -4.97 8.96 71.98 0.64 -4.32 16 10 N -0.55 -28.05 2.50 -658.36 -1.65 -29.70 16 11 C -0.27 -14.81 8.27 84.03 0.70 -14.11 16 12 H 0.05 2.82 6.98 -2.91 -0.02 2.80 16 13 C -0.03 -1.47 4.84 84.86 0.41 -1.06 16 14 N -0.91 -48.69 10.45 21.65 0.23 -48.46 16 15 Si 0.95 44.20 29.59 68.60 2.03 46.23 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 C 0.13 5.99 4.75 44.99 0.21 6.20 16 20 C -0.19 -8.23 9.79 30.62 0.30 -7.93 16 21 C -0.20 -8.69 9.72 30.62 0.30 -8.39 16 22 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.05 1.73 7.58 -2.38 -0.02 1.71 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.41 10.54 8.02 -92.71 -0.74 9.79 16 30 H 0.03 1.36 6.98 -2.39 -0.02 1.34 16 31 H 0.06 2.75 7.25 -2.39 -0.02 2.73 16 32 H 0.07 2.20 7.56 -2.39 -0.02 2.18 16 33 H 0.26 13.25 8.32 -92.70 -0.77 12.48 16 34 H 0.09 3.97 7.04 -2.39 -0.02 3.96 16 35 H 0.08 3.55 6.84 -2.38 -0.02 3.53 16 36 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.06 2.83 8.06 -2.39 -0.02 2.81 16 Total: -1.00 -64.11 306.82 3.43 -60.68 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.29 Total: 25.29 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 4.77 Total: -1.85 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -3.62 Total: -102.83 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.04 Total: -27.52 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -64.11 3.43 -60.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706713937.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.803 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds