Wall clock time and date at job start Mon Mar 30 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47170 * 2 1 4 4 N 1.46500 * 109.46781 * 120.00199 * 2 1 3 5 5 C 1.34775 * 119.99760 * 154.99725 * 4 2 1 6 6 O 1.21278 * 120.00254 * 0.02562 * 5 4 2 7 7 C 1.50709 * 119.99824 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.46875 * 60.00721 * 7 5 4 9 9 C 1.52997 * 109.47106 * 300.00467 * 7 5 4 10 10 N 1.46500 * 109.47001 * 180.02562 * 7 5 4 11 11 C 1.36937 * 119.99818 * 240.43947 * 10 7 5 12 12 H 1.07997 * 119.99994 * 147.40674 * 11 10 7 13 13 C 1.38807 * 120.00068 * 327.40723 * 11 10 7 14 14 N 1.31624 * 120.00066 * 346.17047 * 13 11 10 15 15 Si 1.86808 * 120.00244 * 166.16701 * 13 11 10 16 16 H 1.48498 * 109.46662 * 60.00048 * 15 13 11 17 17 H 1.48496 * 109.47006 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46949 * 300.00235 * 15 13 11 19 19 C 1.46496 * 120.00156 * 60.43599 * 10 7 5 20 20 C 1.52998 * 117.51609 * 165.32248 * 19 10 7 21 21 C 1.52996 * 59.99965 * 107.48616 * 20 19 10 22 22 H 1.08998 * 109.47245 * 300.00083 * 1 2 3 23 23 H 1.09000 * 109.46922 * 59.99984 * 1 2 3 24 24 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47245 * 239.99917 * 2 1 3 26 26 H 1.08998 * 109.46944 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47211 * 299.99839 * 3 2 1 28 28 H 1.09005 * 109.46727 * 59.99927 * 3 2 1 29 29 H 0.97001 * 120.00369 * 334.99895 * 4 2 1 30 30 H 1.09000 * 109.47009 * 179.97438 * 9 7 5 31 31 H 1.09007 * 109.47131 * 299.99464 * 9 7 5 32 32 H 1.08999 * 109.47318 * 60.00149 * 9 7 5 33 33 H 0.97003 * 119.99706 * 185.01631 * 14 13 11 34 34 H 1.09004 * 115.55230 * 19.63201 * 19 10 7 35 35 H 1.09006 * 117.50361 * 214.97364 * 20 19 10 36 36 H 1.09001 * 117.50358 * 359.97438 * 20 19 10 37 37 H 1.08997 * 117.49803 * 252.51135 * 21 20 19 38 38 H 1.09001 * 117.50338 * 107.48764 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2402 -1.2593 1.1944 6 8 3.9357 -1.1988 0.2027 7 6 3.7427 -1.9693 2.4251 8 1 3.0702 -2.7912 2.6703 9 6 3.7943 -0.9858 3.5959 10 7 5.0859 -2.4960 2.1707 11 6 5.3201 -3.8427 2.2531 12 1 6.0570 -4.3029 1.6115 13 6 4.6105 -4.6163 3.1612 14 7 3.9206 -4.0375 4.1212 15 14 4.6345 -6.4790 3.0210 16 1 6.0313 -6.9669 3.1484 17 1 3.8035 -7.0675 4.1018 18 1 4.0875 -6.8830 1.7009 19 6 6.1784 -1.5821 1.8282 20 6 7.6063 -2.1252 1.9105 21 6 6.9631 -1.8681 0.5463 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.4621 -0.7388 1.9895 30 1 4.1574 -1.4994 4.4861 31 1 4.4670 -0.1638 3.3506 32 1 2.7952 -0.5935 3.7853 33 1 3.4845 -4.5778 4.7985 34 1 6.0206 -0.5382 2.0994 35 1 8.3881 -1.4387 2.2357 36 1 7.7333 -3.1626 2.2199 37 1 6.6667 -2.7365 -0.0420 38 1 7.3215 -1.0124 -0.0260 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706713940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:06 Heat of formation + Delta-G solvation = 5.719821 kcal Electronic energy + Delta-G solvation = -18377.982106 eV Core-core repulsion = 15643.008877 eV Total energy + Delta-G solvation = -2734.973228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.12423 -36.87939 -35.23460 -33.71639 -31.72859 -30.49445 -28.40947 -27.08897 -24.22791 -23.35442 -21.20512 -20.98634 -20.01657 -19.17564 -16.72850 -16.15311 -15.54305 -14.85206 -14.42713 -14.35843 -13.94454 -13.43973 -13.07624 -12.69348 -12.57000 -12.20595 -11.97944 -11.93741 -11.60454 -11.23251 -11.11023 -10.98313 -10.80479 -10.75098 -10.57159 -10.43880 -10.21662 -9.86535 -9.47372 -9.13160 -8.67953 -8.48281 -8.39060 -6.48694 -5.89588 -3.34018 3.35129 3.40096 3.43610 3.67000 3.85625 4.43759 5.02926 5.10236 5.23581 5.26949 5.39079 5.43374 5.65919 5.78137 5.86861 5.95056 6.03818 6.05535 6.23358 6.30578 6.32822 6.42251 6.47456 6.50730 6.64373 6.67139 6.80450 7.11877 7.17207 7.30646 7.31542 7.42110 7.78833 8.23241 8.45982 9.06658 9.25294 9.77413 10.31041 11.18508 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022157 B = 0.008688 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.394853 B = 3222.005752 C = 3873.590303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 C -0.159 4.159 4 N -0.740 5.740 5 C 0.486 3.514 6 O -0.534 6.534 7 C 0.173 3.827 8 H 0.127 0.873 9 C -0.137 4.137 10 N -0.532 5.532 11 C -0.248 4.248 12 H 0.066 0.934 13 C 0.007 3.993 14 N -0.902 5.902 15 Si 0.906 3.094 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.283 1.283 19 C 0.146 3.854 20 C -0.207 4.207 21 C -0.206 4.206 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.394 0.606 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.257 0.743 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 7.935 -2.949 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 C -0.218 4.218 4 N -0.396 5.396 5 C 0.273 3.727 6 O -0.409 6.409 7 C 0.062 3.938 8 H 0.144 0.856 9 C -0.196 4.196 10 N -0.247 5.247 11 C -0.377 4.377 12 H 0.084 0.916 13 C -0.191 4.191 14 N -0.546 5.546 15 Si 0.736 3.264 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.209 1.209 19 C 0.037 3.963 20 C -0.246 4.246 21 C -0.247 4.247 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.228 0.772 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.221 7.851 -3.555 10.077 hybrid contribution -0.275 -0.943 0.252 1.014 sum -5.495 6.908 -3.303 9.425 Atomic orbital electron populations 1.22055 0.95031 1.02305 1.02159 1.20770 0.93196 0.92783 0.90338 1.22158 1.02180 0.96337 1.01116 1.46460 1.19138 1.58232 1.15723 1.23086 0.80112 0.77192 0.92314 1.90591 1.56032 1.58692 1.35598 1.20351 0.89296 0.96333 0.87815 0.85570 1.22013 0.98925 0.97935 1.00759 1.43018 1.00946 1.02529 1.78199 1.19068 1.21118 0.82439 1.15123 0.91602 1.25146 1.00152 0.98409 0.95395 1.69845 1.37054 1.34264 1.13483 0.86300 0.77789 0.85098 0.77228 1.20716 1.21501 1.20941 1.20744 0.85615 0.92743 0.97218 1.23200 0.97375 1.02429 1.01592 1.23132 1.07614 1.02258 0.91689 0.92370 0.91697 0.92157 0.90138 0.92161 0.92523 0.92898 0.77247 0.89878 0.95035 0.94523 0.93243 0.89899 0.91006 0.88545 0.89822 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.38 37.16 0.35 -1.34 16 2 C 0.13 1.91 3.18 -67.93 -0.22 1.70 16 3 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 4 N -0.74 -12.16 4.97 -53.80 -0.27 -12.43 16 5 C 0.49 10.29 7.02 -10.98 -0.08 10.21 16 6 O -0.53 -12.91 14.73 5.56 0.08 -12.83 16 7 C 0.17 3.94 2.19 -69.08 -0.15 3.79 16 8 H 0.13 3.17 5.83 -51.93 -0.30 2.87 16 9 C -0.14 -2.77 8.95 37.16 0.33 -2.43 16 10 N -0.53 -13.38 2.49 -159.46 -0.40 -13.78 16 11 C -0.25 -6.72 8.28 -15.06 -0.12 -6.85 16 12 H 0.07 1.82 6.92 -52.49 -0.36 1.46 16 13 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 14 N -0.90 -24.06 10.43 55.49 0.58 -23.48 16 15 Si 0.91 21.33 29.58 -169.99 -5.03 16.30 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.15 3.37 4.83 -67.94 -0.33 3.05 16 20 C -0.21 -4.42 9.79 -26.73 -0.26 -4.68 16 21 C -0.21 -4.52 9.79 -26.73 -0.26 -4.78 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.39 5.62 8.02 -40.82 -0.33 5.30 16 30 H 0.08 1.88 7.53 -51.93 -0.39 1.49 16 31 H 0.03 0.61 6.89 -51.93 -0.36 0.25 16 32 H 0.04 0.62 7.56 -51.93 -0.39 0.22 16 33 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 34 H 0.08 1.85 6.93 -51.93 -0.36 1.49 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.10 2.21 6.87 -51.93 -0.36 1.85 16 37 H 0.08 1.98 7.99 -51.93 -0.42 1.57 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 306.96 15.07 4.63 4.63 Total: -1.00 -29.27 306.96 -7.06 -36.33 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.18 Total: 8.22 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.47 Total: -2.96 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.09 Total: -49.69 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.27 -7.06 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706713940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.051 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds