Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47170 * 2 1 4 4 N 1.46500 * 109.46781 * 120.00199 * 2 1 3 5 5 C 1.34775 * 119.99760 * 154.99725 * 4 2 1 6 6 O 1.21278 * 120.00254 * 0.02562 * 5 4 2 7 7 C 1.50709 * 119.99824 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.46875 * 60.00721 * 7 5 4 9 9 C 1.52997 * 109.47106 * 300.00467 * 7 5 4 10 10 N 1.46500 * 109.47001 * 180.02562 * 7 5 4 11 11 C 1.36937 * 119.99818 * 240.43947 * 10 7 5 12 12 H 1.07997 * 119.99994 * 147.40674 * 11 10 7 13 13 C 1.38807 * 120.00068 * 327.40723 * 11 10 7 14 14 N 1.31624 * 120.00066 * 346.17047 * 13 11 10 15 15 Si 1.86808 * 120.00244 * 166.16701 * 13 11 10 16 16 H 1.48498 * 109.46662 * 60.00048 * 15 13 11 17 17 H 1.48496 * 109.47006 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46949 * 300.00235 * 15 13 11 19 19 C 1.46496 * 120.00156 * 60.43599 * 10 7 5 20 20 C 1.52998 * 117.51609 * 165.32248 * 19 10 7 21 21 C 1.52996 * 59.99965 * 107.48616 * 20 19 10 22 22 H 1.08998 * 109.47245 * 300.00083 * 1 2 3 23 23 H 1.09000 * 109.46922 * 59.99984 * 1 2 3 24 24 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47245 * 239.99917 * 2 1 3 26 26 H 1.08998 * 109.46944 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47211 * 299.99839 * 3 2 1 28 28 H 1.09005 * 109.46727 * 59.99927 * 3 2 1 29 29 H 0.97001 * 120.00369 * 334.99895 * 4 2 1 30 30 H 1.09000 * 109.47009 * 179.97438 * 9 7 5 31 31 H 1.09007 * 109.47131 * 299.99464 * 9 7 5 32 32 H 1.08999 * 109.47318 * 60.00149 * 9 7 5 33 33 H 0.97003 * 119.99706 * 185.01631 * 14 13 11 34 34 H 1.09004 * 115.55230 * 19.63201 * 19 10 7 35 35 H 1.09006 * 117.50361 * 214.97364 * 20 19 10 36 36 H 1.09001 * 117.50358 * 359.97438 * 20 19 10 37 37 H 1.08997 * 117.49803 * 252.51135 * 21 20 19 38 38 H 1.09001 * 117.50338 * 107.48764 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2402 -1.2593 1.1944 6 8 3.9357 -1.1988 0.2027 7 6 3.7427 -1.9693 2.4251 8 1 3.0702 -2.7912 2.6703 9 6 3.7943 -0.9858 3.5959 10 7 5.0859 -2.4960 2.1707 11 6 5.3201 -3.8427 2.2531 12 1 6.0570 -4.3029 1.6115 13 6 4.6105 -4.6163 3.1612 14 7 3.9206 -4.0375 4.1212 15 14 4.6345 -6.4790 3.0210 16 1 6.0313 -6.9669 3.1484 17 1 3.8035 -7.0675 4.1018 18 1 4.0875 -6.8830 1.7009 19 6 6.1784 -1.5821 1.8282 20 6 7.6063 -2.1252 1.9105 21 6 6.9631 -1.8681 0.5463 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.4621 -0.7388 1.9895 30 1 4.1574 -1.4994 4.4861 31 1 4.4670 -0.1638 3.3506 32 1 2.7952 -0.5935 3.7853 33 1 3.4845 -4.5778 4.7985 34 1 6.0206 -0.5382 2.0994 35 1 8.3881 -1.4387 2.2357 36 1 7.7333 -3.1626 2.2199 37 1 6.6667 -2.7365 -0.0420 38 1 7.3215 -1.0124 -0.0260 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706713940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = -12.359314 kcal Electronic energy + Delta-G solvation = -18378.766076 eV Core-core repulsion = 15643.008877 eV Total energy + Delta-G solvation = -2735.757198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74303 -38.59577 -36.64650 -35.56024 -33.52699 -32.02198 -30.18645 -28.04155 -26.17201 -24.99947 -22.93293 -22.42804 -21.60905 -20.88676 -18.51349 -17.90151 -17.11808 -16.48440 -16.21810 -15.93981 -15.53610 -14.89777 -14.67010 -14.34224 -13.89595 -13.77197 -13.32495 -13.10464 -13.03237 -12.93508 -12.77601 -12.69458 -12.53264 -12.23198 -12.18484 -12.07638 -11.84196 -11.69033 -11.29462 -10.90526 -10.52561 -10.31669 -9.86759 -8.40531 -7.90443 -5.37689 1.45728 1.47951 1.54389 2.00195 2.38328 2.55672 3.18518 3.46238 3.54560 3.97880 4.20464 4.27202 4.33455 4.38994 4.49704 4.55428 4.74581 4.78366 4.79210 4.82148 4.94458 4.96131 4.96662 5.09566 5.10787 5.29949 5.34245 5.38234 5.48637 5.54046 5.64754 5.73286 5.81226 6.43385 6.79765 7.14996 7.58123 7.85788 8.33346 9.14413 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022157 B = 0.008688 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.394853 B = 3222.005752 C = 3873.590303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 C -0.152 4.152 4 N -0.724 5.724 5 C 0.488 3.512 6 O -0.570 6.570 7 C 0.170 3.830 8 H 0.101 0.899 9 C -0.123 4.123 10 N -0.548 5.548 11 C -0.265 4.265 12 H 0.049 0.951 13 C -0.029 4.029 14 N -0.912 5.912 15 Si 0.960 3.040 16 H -0.280 1.280 17 H -0.283 1.283 18 H -0.288 1.288 19 C 0.128 3.872 20 C -0.193 4.193 21 C -0.200 4.200 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.407 0.593 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.257 0.743 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 9.181 -2.835 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 C -0.211 4.211 4 N -0.378 5.378 5 C 0.274 3.726 6 O -0.448 6.448 7 C 0.060 3.940 8 H 0.119 0.881 9 C -0.182 4.182 10 N -0.265 5.265 11 C -0.396 4.396 12 H 0.067 0.933 13 C -0.226 4.226 14 N -0.556 5.556 15 Si 0.789 3.211 16 H -0.206 1.206 17 H -0.209 1.209 18 H -0.214 1.214 19 C 0.019 3.981 20 C -0.232 4.232 21 C -0.241 4.241 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.243 0.757 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.414 9.125 -3.427 11.668 hybrid contribution 0.042 -1.289 0.178 1.302 sum -6.371 7.837 -3.249 10.609 Atomic orbital electron populations 1.21997 0.91687 1.02727 1.04171 1.20988 0.95741 0.92860 0.87984 1.22091 1.00133 0.95677 1.03178 1.46267 1.17568 1.56882 1.17103 1.22646 0.81316 0.77454 0.91151 1.90571 1.57466 1.60362 1.36436 1.20333 0.88059 0.96212 0.89436 0.88108 1.21829 1.00864 0.97071 0.98405 1.43159 1.02340 1.02233 1.78735 1.19106 1.21398 0.83854 1.15202 0.93302 1.25693 1.00091 1.01584 0.95267 1.69952 1.37041 1.35044 1.13530 0.85466 0.77654 0.81169 0.76833 1.20571 1.20856 1.21439 1.20919 0.86057 0.92958 0.98164 1.23184 0.97290 1.01913 1.00793 1.23035 1.07501 1.01930 0.91598 0.90484 0.89545 0.92570 0.92881 0.95235 0.90117 0.91198 0.75737 0.92491 0.94538 0.91239 0.93370 0.89046 0.87768 0.90567 0.92430 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.38 71.98 0.68 -2.02 16 2 C 0.13 3.44 3.18 44.99 0.14 3.59 16 3 C -0.15 -3.64 9.48 71.98 0.68 -2.96 16 4 N -0.72 -22.83 4.97 -442.53 -2.20 -25.03 16 5 C 0.49 20.63 7.02 87.66 0.62 21.24 16 6 O -0.57 -27.96 14.73 -3.02 -0.04 -28.00 16 7 C 0.17 7.80 2.19 44.25 0.10 7.90 16 8 H 0.10 5.14 5.83 -2.39 -0.01 5.13 16 9 C -0.12 -4.86 8.95 71.98 0.64 -4.21 16 10 N -0.55 -28.10 2.49 -658.40 -1.64 -29.74 16 11 C -0.27 -14.76 8.28 84.03 0.70 -14.06 16 12 H 0.05 2.82 6.92 -2.91 -0.02 2.80 16 13 C -0.03 -1.57 4.96 84.86 0.42 -1.15 16 14 N -0.91 -48.98 10.43 21.65 0.23 -48.75 16 15 Si 0.96 44.31 29.58 68.60 2.03 46.34 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 19 C 0.13 5.92 4.83 44.99 0.22 6.13 16 20 C -0.19 -8.16 9.79 30.59 0.30 -7.86 16 21 C -0.20 -8.78 9.79 30.59 0.30 -8.48 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.73 7.58 -2.39 -0.02 1.71 16 26 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.41 10.73 8.02 -92.71 -0.74 9.99 16 30 H 0.06 2.56 7.53 -2.39 -0.02 2.54 16 31 H 0.04 1.38 6.89 -2.38 -0.02 1.36 16 32 H 0.07 2.22 7.56 -2.39 -0.02 2.20 16 33 H 0.26 13.35 8.32 -92.71 -0.77 12.58 16 34 H 0.09 4.03 6.93 -2.38 -0.02 4.01 16 35 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 36 H 0.08 3.54 6.87 -2.39 -0.02 3.52 16 37 H 0.06 2.81 7.99 -2.39 -0.02 2.79 16 38 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -64.23 306.96 3.45 -60.78 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.29 Total: 26.30 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 4.79 Total: -1.89 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -3.61 Total: -103.52 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.04 Total: -28.00 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -64.23 3.45 -60.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706713940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.417 kcal (2) G-P(sol) polarization free energy of solvation -64.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds