Wall clock time and date at job start Mon Mar 30 2020 04:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47200 * 2 1 4 4 C 1.46904 * 111.00101 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46670 * 35.00403 * 4 3 2 6 6 C 1.52996 * 109.46956 * 275.00175 * 4 3 2 7 7 C 1.50700 * 109.46699 * 155.00200 * 4 3 2 8 8 O 1.21277 * 120.00354 * 12.69314 * 7 4 3 9 9 N 1.34779 * 119.99502 * 192.69069 * 7 4 3 10 10 C 1.46499 * 120.00037 * 5.19307 * 9 7 4 11 11 C 1.50695 * 109.47447 * 85.75196 * 10 9 7 12 12 H 1.08007 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00249 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99667 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00069 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47293 * 89.99540 * 15 13 11 17 17 H 1.48505 * 109.46912 * 209.99469 * 15 13 11 18 18 H 1.48500 * 109.47012 * 329.99518 * 15 13 11 19 19 C 1.46506 * 119.99976 * 185.18430 * 9 7 4 20 20 C 1.52997 * 117.49486 * 16.31671 * 19 9 7 21 21 C 1.52999 * 117.50090 * 307.65562 * 19 9 7 22 22 H 1.09009 * 109.46647 * 59.99873 * 1 2 3 23 23 H 1.08997 * 109.47192 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47209 * 300.00115 * 1 2 3 25 25 H 1.08998 * 109.47344 * 240.00601 * 2 1 3 26 26 H 1.08998 * 109.47087 * 119.99972 * 2 1 3 27 27 H 1.00905 * 111.00253 * 56.04695 * 3 2 1 28 28 H 1.08993 * 109.47480 * 295.10993 * 6 4 3 29 29 H 1.08998 * 109.47533 * 55.11523 * 6 4 3 30 30 H 1.09005 * 109.46747 * 175.11465 * 6 4 3 31 31 H 1.09004 * 109.46768 * 205.75047 * 10 9 7 32 32 H 1.09003 * 109.47051 * 325.74858 * 10 9 7 33 33 H 0.97001 * 119.99812 * 180.02562 * 14 13 11 34 34 H 1.09006 * 115.54784 * 161.98025 * 19 9 7 35 35 H 1.08999 * 117.50164 * 359.97438 * 20 19 9 36 36 H 1.09009 * 117.49647 * 145.01739 * 20 19 9 37 37 H 1.08993 * 117.49845 * 214.97778 * 21 19 9 38 38 H 1.09006 * 117.49796 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 0.0006 5 1 3.8740 0.5923 -0.5886 6 6 4.0007 1.3123 1.4378 7 6 3.9562 2.7248 -0.5998 8 8 3.1679 3.6292 -0.7770 9 7 5.2508 2.8828 -0.9398 10 6 6.1792 1.7547 -0.8324 11 6 6.1157 0.9300 -2.0920 12 1 5.4499 1.2172 -2.8925 13 6 6.9067 -0.1918 -2.2223 14 7 7.7171 -0.5418 -1.2474 15 14 6.8274 -1.2144 -3.7835 16 1 7.8219 -0.7037 -4.7609 17 1 7.1317 -2.6321 -3.4626 18 1 5.4656 -1.1205 -4.3681 19 6 5.7294 4.1826 -1.4170 20 6 4.8430 5.4016 -1.1542 21 6 4.9668 4.8360 -2.5712 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6442 1.9013 0.7814 28 1 3.6870 2.1887 2.0048 29 1 3.5914 0.4144 1.9008 30 1 5.0892 1.2540 1.4319 31 1 7.1932 2.1305 -0.6949 32 1 5.9022 1.1361 0.0213 33 1 8.2738 -1.3307 -1.3392 34 1 6.8091 4.3281 -1.3807 35 1 3.9035 5.2365 -0.6268 36 1 5.3395 6.3493 -0.9455 37 1 5.5447 5.4117 -3.2942 38 1 4.1092 4.2985 -2.9759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707922990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:24 Heat of formation + Delta-G solvation = -0.355558 kcal Electronic energy + Delta-G solvation = -18182.074654 eV Core-core repulsion = 15446.837978 eV Total energy + Delta-G solvation = -2735.236676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67815 -36.78930 -35.25012 -34.18180 -32.29694 -31.32399 -27.66848 -27.05035 -24.22819 -22.71276 -22.10921 -21.73854 -21.10614 -18.21396 -16.74760 -16.03857 -15.74249 -15.22941 -14.61426 -14.46452 -14.18942 -14.07683 -13.26370 -12.96215 -12.81930 -12.32906 -12.13332 -11.98524 -11.65752 -11.57418 -11.29643 -11.12226 -10.97483 -10.92881 -10.78656 -10.59197 -10.37995 -10.21303 -9.65209 -9.53772 -8.69596 -8.53462 -7.93902 -7.44054 -6.19200 -4.26157 3.22427 3.29459 3.32588 3.41590 3.77706 4.31644 4.61074 4.63632 5.11533 5.21792 5.28236 5.38481 5.54585 5.57737 5.60220 5.65313 5.73269 5.76007 5.92306 6.06869 6.18996 6.22764 6.24877 6.29113 6.33569 6.40377 6.62064 6.84541 6.97454 7.14123 7.31077 7.67821 7.73578 7.78602 8.05786 8.38245 8.81704 9.13303 9.41764 10.86802 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.010247 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.914420 B = 2731.761720 C = 3897.439319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 N -0.668 5.668 4 C 0.067 3.933 5 H 0.118 0.882 6 C -0.177 4.177 7 C 0.529 3.471 8 O -0.551 6.551 9 N -0.571 5.571 10 C 0.232 3.768 11 C -0.535 4.535 12 H 0.062 0.938 13 C 0.065 3.935 14 N -0.892 5.892 15 Si 0.895 3.105 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.089 3.911 20 C -0.204 4.204 21 C -0.189 4.189 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.340 0.660 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 2.575 4.121 8.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 N -0.299 5.299 4 C -0.045 4.045 5 H 0.136 0.864 6 C -0.236 4.236 7 C 0.317 3.683 8 O -0.431 6.431 9 N -0.301 5.301 10 C 0.113 3.887 11 C -0.574 4.574 12 H 0.080 0.920 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.017 4.017 20 C -0.241 4.241 21 C -0.227 4.227 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.158 0.842 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.952 2.931 3.405 8.277 hybrid contribution 0.526 -1.018 -0.078 1.149 sum -6.425 1.913 3.327 7.484 Atomic orbital electron populations 1.21746 0.95266 1.01258 1.02240 1.21955 0.95240 0.89610 1.00719 1.60152 1.06485 1.12881 1.50362 1.21489 0.88146 0.98246 0.96664 0.86435 1.22462 1.03823 1.01413 0.95944 1.20300 0.81480 0.88722 0.77828 1.90404 1.54131 1.42211 1.56327 1.47626 1.09302 1.10670 1.62466 1.19613 0.88499 0.82733 0.97865 1.21532 1.24016 1.09571 1.02255 0.92025 1.24933 0.94918 0.97270 0.96693 1.69918 1.25018 1.26200 1.31963 0.86527 0.78700 0.79260 0.83236 1.20494 1.21079 1.19702 1.21491 0.95933 0.82903 1.01349 1.23827 1.04597 0.95503 1.00196 1.23115 1.03610 1.04403 0.91621 0.91857 0.92463 0.93099 0.90772 0.95435 0.84186 0.92745 0.92254 0.90061 0.94634 0.93588 0.92548 0.86190 0.84750 0.90389 0.89641 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.17 37.16 0.38 -1.36 16 2 C 0.05 0.77 6.20 -3.82 -0.02 0.75 16 3 N -0.67 -11.17 5.77 -107.96 -0.62 -11.79 16 4 C 0.07 1.26 2.16 -68.87 -0.15 1.11 16 5 H 0.12 2.46 6.66 -51.93 -0.35 2.12 16 6 C -0.18 -2.86 8.91 37.16 0.33 -2.53 16 7 C 0.53 11.16 6.75 -10.98 -0.07 11.09 16 8 O -0.55 -12.28 12.24 5.56 0.07 -12.21 16 9 N -0.57 -12.26 2.83 -167.47 -0.47 -12.74 16 10 C 0.23 5.47 4.82 -5.20 -0.03 5.45 16 11 C -0.54 -13.96 8.80 -34.44 -0.30 -14.26 16 12 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C 0.09 1.73 6.61 -67.93 -0.45 1.28 16 20 C -0.20 -3.63 9.63 -26.69 -0.26 -3.89 16 21 C -0.19 -3.51 9.88 -26.69 -0.26 -3.77 16 22 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 26 H 0.03 0.37 7.36 -51.93 -0.38 -0.01 16 27 H 0.34 5.25 8.48 -39.29 -0.33 4.91 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.85 7.36 -51.93 -0.38 0.46 16 30 H 0.08 1.42 5.81 -51.93 -0.30 1.11 16 31 H 0.04 0.88 7.97 -51.93 -0.41 0.46 16 32 H 0.05 1.08 4.49 -51.93 -0.23 0.85 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.12 2.17 8.05 -51.93 -0.42 1.75 16 35 H 0.13 2.68 5.19 -52.23 -0.27 2.41 16 36 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.96 7.63 -51.93 -0.40 1.56 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -28.01 306.41 -7.61 -35.62 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.98 Total: 8.91 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.93 Total: -4.53 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.36 Total: -48.04 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.01 -7.61 -35.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707922990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.265 kcal (2) G-P(sol) polarization free energy of solvation -28.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds