Wall clock time and date at job start Mon Mar 30 2020 04:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47200 * 2 1 4 4 C 1.46904 * 111.00101 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46670 * 35.00403 * 4 3 2 6 6 C 1.52996 * 109.46956 * 275.00175 * 4 3 2 7 7 C 1.50700 * 109.46699 * 155.00200 * 4 3 2 8 8 O 1.21277 * 120.00354 * 12.69314 * 7 4 3 9 9 N 1.34779 * 119.99502 * 192.69069 * 7 4 3 10 10 C 1.46499 * 120.00037 * 5.19307 * 9 7 4 11 11 C 1.50695 * 109.47447 * 85.75196 * 10 9 7 12 12 H 1.08007 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00249 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99667 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00069 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47293 * 89.99540 * 15 13 11 17 17 H 1.48505 * 109.46912 * 209.99469 * 15 13 11 18 18 H 1.48500 * 109.47012 * 329.99518 * 15 13 11 19 19 C 1.46506 * 119.99976 * 185.18430 * 9 7 4 20 20 C 1.52997 * 117.49486 * 16.31671 * 19 9 7 21 21 C 1.52999 * 117.50090 * 307.65562 * 19 9 7 22 22 H 1.09009 * 109.46647 * 59.99873 * 1 2 3 23 23 H 1.08997 * 109.47192 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47209 * 300.00115 * 1 2 3 25 25 H 1.08998 * 109.47344 * 240.00601 * 2 1 3 26 26 H 1.08998 * 109.47087 * 119.99972 * 2 1 3 27 27 H 1.00905 * 111.00253 * 56.04695 * 3 2 1 28 28 H 1.08993 * 109.47480 * 295.10993 * 6 4 3 29 29 H 1.08998 * 109.47533 * 55.11523 * 6 4 3 30 30 H 1.09005 * 109.46747 * 175.11465 * 6 4 3 31 31 H 1.09004 * 109.46768 * 205.75047 * 10 9 7 32 32 H 1.09003 * 109.47051 * 325.74858 * 10 9 7 33 33 H 0.97001 * 119.99812 * 180.02562 * 14 13 11 34 34 H 1.09006 * 115.54784 * 161.98025 * 19 9 7 35 35 H 1.08999 * 117.50164 * 359.97438 * 20 19 9 36 36 H 1.09009 * 117.49647 * 145.01739 * 20 19 9 37 37 H 1.08993 * 117.49845 * 214.97778 * 21 19 9 38 38 H 1.09006 * 117.49796 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 0.0006 5 1 3.8740 0.5923 -0.5886 6 6 4.0007 1.3123 1.4378 7 6 3.9562 2.7248 -0.5998 8 8 3.1679 3.6292 -0.7770 9 7 5.2508 2.8828 -0.9398 10 6 6.1792 1.7547 -0.8324 11 6 6.1157 0.9300 -2.0920 12 1 5.4499 1.2172 -2.8925 13 6 6.9067 -0.1918 -2.2223 14 7 7.7171 -0.5418 -1.2474 15 14 6.8274 -1.2144 -3.7835 16 1 7.8219 -0.7037 -4.7609 17 1 7.1317 -2.6321 -3.4626 18 1 5.4656 -1.1205 -4.3681 19 6 5.7294 4.1826 -1.4170 20 6 4.8430 5.4016 -1.1542 21 6 4.9668 4.8360 -2.5712 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6442 1.9013 0.7814 28 1 3.6870 2.1887 2.0048 29 1 3.5914 0.4144 1.9008 30 1 5.0892 1.2540 1.4319 31 1 7.1932 2.1305 -0.6949 32 1 5.9022 1.1361 0.0213 33 1 8.2738 -1.3307 -1.3392 34 1 6.8091 4.3281 -1.3807 35 1 3.9035 5.2365 -0.6268 36 1 5.3395 6.3493 -0.9455 37 1 5.5447 5.4117 -3.2942 38 1 4.1092 4.2985 -2.9759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707922990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:23 Heat of formation + Delta-G solvation = -17.693322 kcal Electronic energy + Delta-G solvation = -18182.826476 eV Core-core repulsion = 15446.837978 eV Total energy + Delta-G solvation = -2735.988498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.29790 -38.17597 -36.85587 -35.88687 -34.15648 -32.64284 -28.99292 -28.89437 -25.77867 -24.58254 -23.37417 -23.18159 -22.53321 -19.81259 -18.71323 -17.74947 -17.30413 -16.62948 -16.31026 -15.97325 -15.71060 -15.48869 -14.67518 -14.54943 -14.24003 -13.98244 -13.84573 -13.38109 -13.16413 -12.93626 -12.78270 -12.65966 -12.51446 -12.36192 -12.33193 -12.13796 -12.06740 -11.83443 -11.40830 -11.17823 -10.61693 -10.21141 -9.29041 -9.15395 -8.20518 -6.34868 1.38506 1.41029 1.50200 1.75584 2.20235 2.40758 3.07467 3.11784 3.28391 3.69786 4.04250 4.08062 4.15075 4.20624 4.25820 4.32571 4.42522 4.59836 4.71005 4.75670 4.78684 4.85561 4.93575 4.98661 5.05041 5.12804 5.15976 5.29664 5.35548 5.45104 5.67324 5.92832 6.04059 6.10803 6.49331 6.58877 6.84144 7.33611 7.48315 8.83425 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.010247 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.914420 B = 2731.761720 C = 3897.439319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 N -0.678 5.678 4 C 0.073 3.927 5 H 0.091 0.909 6 C -0.167 4.167 7 C 0.520 3.480 8 O -0.565 6.565 9 N -0.576 5.576 10 C 0.246 3.754 11 C -0.545 4.545 12 H 0.043 0.957 13 C 0.026 3.974 14 N -0.915 5.915 15 Si 0.951 3.049 16 H -0.275 1.275 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.062 3.938 20 C -0.183 4.183 21 C -0.188 4.188 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.348 0.652 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.047 0.953 33 H 0.268 0.732 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 2.602 4.397 8.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 N -0.311 5.311 4 C -0.040 4.040 5 H 0.109 0.891 6 C -0.225 4.225 7 C 0.309 3.691 8 O -0.446 6.446 9 N -0.305 5.305 10 C 0.126 3.874 11 C -0.583 4.583 12 H 0.061 0.939 13 C -0.175 4.175 14 N -0.555 5.555 15 Si 0.776 3.224 16 H -0.201 1.201 17 H -0.202 1.202 18 H -0.201 1.201 19 C -0.043 4.043 20 C -0.220 4.220 21 C -0.227 4.227 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.167 0.833 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.388 2.965 3.686 8.772 hybrid contribution 0.630 -0.991 -0.169 1.186 sum -6.758 1.974 3.517 7.870 Atomic orbital electron populations 1.21698 0.93096 1.02615 1.02328 1.22024 0.96976 0.88169 1.00466 1.60126 1.05224 1.14633 1.51070 1.21331 0.89506 0.95698 0.97480 0.89137 1.22359 1.02661 1.03018 0.94503 1.20789 0.81215 0.89509 0.77608 1.90402 1.54296 1.42972 1.56944 1.47616 1.09269 1.10967 1.62676 1.19312 0.88135 0.83082 0.96900 1.21633 1.23744 1.10292 1.02656 0.93852 1.25555 0.94592 0.98115 0.99217 1.69985 1.25485 1.26703 1.33285 0.85663 0.78363 0.78238 0.80090 1.20085 1.20153 1.20053 1.21826 0.97005 0.82789 1.02633 1.23757 1.03322 0.95985 0.98925 1.23107 1.02703 1.04415 0.92449 0.92962 0.90479 0.91779 0.92549 0.94110 0.83250 0.91510 0.90171 0.91647 0.96017 0.93536 0.92239 0.84967 0.86743 0.86967 0.86871 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 10.17 71.98 0.73 -2.30 16 2 C 0.05 1.44 6.20 86.30 0.54 1.98 16 3 N -0.68 -22.33 5.77 -495.46 -2.86 -25.19 16 4 C 0.07 2.74 2.16 44.17 0.10 2.83 16 5 H 0.09 3.89 6.66 -2.39 -0.02 3.88 16 6 C -0.17 -5.23 8.91 71.98 0.64 -4.59 16 7 C 0.52 22.17 6.75 87.66 0.59 22.76 16 8 O -0.57 -25.33 12.24 -3.02 -0.04 -25.37 16 9 N -0.58 -25.01 2.83 -802.13 -2.27 -27.29 16 10 C 0.25 11.79 4.82 85.63 0.41 12.20 16 11 C -0.54 -28.85 8.80 25.60 0.23 -28.62 16 12 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 13 C 0.03 1.36 5.46 84.66 0.46 1.82 16 14 N -0.92 -49.70 13.29 21.45 0.28 -49.41 16 15 Si 0.95 42.28 29.54 68.60 2.03 44.30 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 19 C 0.06 2.40 6.61 44.99 0.30 2.70 16 20 C -0.18 -6.25 9.63 30.62 0.29 -5.95 16 21 C -0.19 -6.85 9.88 30.62 0.30 -6.55 16 22 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.74 8.06 -2.39 -0.02 1.72 16 26 H 0.04 1.02 7.36 -2.39 -0.02 1.00 16 27 H 0.35 10.33 8.48 -89.69 -0.76 9.57 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 2.16 7.36 -2.39 -0.02 2.14 16 30 H 0.06 2.27 5.81 -2.38 -0.01 2.25 16 31 H 0.02 1.09 7.97 -2.38 -0.02 1.07 16 32 H 0.05 2.23 4.49 -2.39 -0.01 2.22 16 33 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 34 H 0.13 4.68 8.05 -2.38 -0.02 4.66 16 35 H 0.11 4.49 5.19 -7.10 -0.04 4.45 16 36 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 37 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.06 2.73 7.63 -2.38 -0.02 2.72 16 Total: -1.00 -59.46 306.41 2.00 -57.47 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.26 Total: 29.21 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 4.59 Total: -3.71 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -4.85 Total: -101.89 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.04 Total: -25.37 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -59.46 2.00 -57.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707922990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.773 kcal (2) G-P(sol) polarization free energy of solvation -59.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds