Wall clock time and date at job start Mon Mar 30 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47139 * 2 1 4 4 C 1.46903 * 111.00505 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46783 * 325.00019 * 4 3 2 6 6 C 1.52998 * 109.46650 * 84.99713 * 4 3 2 7 7 C 1.50698 * 109.47186 * 204.99892 * 4 3 2 8 8 O 1.21284 * 120.00232 * 333.94842 * 7 4 3 9 9 N 1.34779 * 119.99804 * 153.95179 * 7 4 3 10 10 C 1.46500 * 119.99711 * 5.61392 * 9 7 4 11 11 C 1.50701 * 109.46917 * 91.76502 * 10 9 7 12 12 H 1.07996 * 120.00350 * 359.72010 * 11 10 9 13 13 C 1.37879 * 119.99969 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99970 * 359.72527 * 13 11 10 15 15 Si 1.86801 * 120.00298 * 179.72408 * 13 11 10 16 16 H 1.48505 * 109.46919 * 89.99873 * 15 13 11 17 17 H 1.48497 * 109.47326 * 209.99895 * 15 13 11 18 18 H 1.48497 * 109.46920 * 330.00269 * 15 13 11 19 19 C 1.46495 * 119.99797 * 185.61168 * 9 7 4 20 20 C 1.53002 * 117.50075 * 16.64643 * 19 9 7 21 21 C 1.52993 * 117.50356 * 307.98445 * 19 9 7 22 22 H 1.09004 * 109.47545 * 299.99633 * 1 2 3 23 23 H 1.08992 * 109.47082 * 60.00564 * 1 2 3 24 24 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47496 * 239.99956 * 2 1 3 26 26 H 1.09002 * 109.47048 * 119.99447 * 2 1 3 27 27 H 1.00905 * 111.00212 * 56.03904 * 3 2 1 28 28 H 1.08997 * 109.47196 * 53.44346 * 6 4 3 29 29 H 1.09006 * 109.46853 * 173.44401 * 6 4 3 30 30 H 1.08994 * 109.47179 * 293.43646 * 6 4 3 31 31 H 1.08992 * 109.47224 * 331.76487 * 10 9 7 32 32 H 1.09000 * 109.46814 * 211.75715 * 10 9 7 33 33 H 0.97002 * 120.00215 * 180.02562 * 14 13 11 34 34 H 1.08999 * 115.54521 * 162.31336 * 19 9 7 35 35 H 1.08995 * 117.49911 * 359.97438 * 20 19 9 36 36 H 1.09002 * 117.49917 * 145.02065 * 20 19 9 37 37 H 1.09001 * 117.50187 * 214.98256 * 21 19 9 38 38 H 1.09000 * 117.49797 * 359.97161 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4881 1.4243 0.0006 5 1 3.8735 0.5926 0.5903 6 6 4.0018 1.3119 -1.4362 7 6 3.9556 2.7250 0.6010 8 8 3.2417 3.7045 0.5571 9 7 5.1671 2.7999 1.1868 10 6 6.0791 1.6547 1.1324 11 6 6.9752 1.7831 -0.0724 12 1 6.8724 2.6304 -0.7341 13 6 7.9229 0.8160 -0.3329 14 7 8.0484 -0.2156 0.4731 15 14 9.0286 0.9711 -1.8305 16 1 10.2560 1.7224 -1.4639 17 1 9.4023 -0.3829 -2.3122 18 1 8.3064 1.6973 -2.9058 19 6 5.5719 4.0266 1.8779 20 6 4.4734 5.0268 2.2438 21 6 5.4506 5.3436 1.1090 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6440 1.9013 0.7813 28 1 3.5255 2.0740 -2.0529 29 1 5.0820 1.4576 -1.4482 30 1 3.7641 0.3242 -1.8308 31 1 5.5014 0.7334 1.0590 32 1 6.6872 1.6313 2.0367 33 1 8.7154 -0.8958 0.2901 34 1 6.4083 3.9225 2.5691 35 1 3.4496 4.7723 1.9699 36 1 4.5873 5.5811 3.1754 37 1 6.2070 6.1063 1.2944 38 1 5.0700 5.2975 0.0886 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707922991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:26 Heat of formation + Delta-G solvation = -18.466821 kcal Electronic energy + Delta-G solvation = -18179.750149 eV Core-core repulsion = 15443.728110 eV Total energy + Delta-G solvation = -2736.022040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.42393 -38.13733 -36.87720 -35.89726 -34.14121 -32.62907 -29.18458 -28.98268 -25.60102 -24.80012 -23.39167 -23.22013 -22.23765 -19.84161 -18.60099 -17.94857 -17.46498 -16.77489 -16.38537 -16.08244 -15.61673 -15.40372 -14.73086 -14.48205 -14.27859 -13.97373 -13.60207 -13.38577 -13.14192 -13.00234 -12.78659 -12.67949 -12.47627 -12.39251 -12.32653 -12.09909 -11.98164 -11.89990 -11.43910 -11.19745 -10.62363 -10.20165 -9.45156 -9.22158 -8.19968 -6.32585 1.40772 1.43563 1.51856 1.61742 2.12822 2.41676 3.05556 3.11097 3.21931 3.56427 4.01300 4.09052 4.16369 4.22940 4.23280 4.32102 4.48561 4.64133 4.71705 4.83042 4.83868 4.91900 4.94532 5.03281 5.08143 5.11249 5.19366 5.33366 5.41446 5.43549 5.67985 5.88989 6.00040 6.04398 6.35738 6.53517 6.80194 7.28217 7.39489 8.85074 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017182 B = 0.009243 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.177056 B = 3028.500988 C = 4156.502647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 N -0.674 5.674 4 C 0.080 3.920 5 H 0.061 0.939 6 C -0.132 4.132 7 C 0.510 3.490 8 O -0.565 6.565 9 N -0.572 5.572 10 C 0.251 3.749 11 C -0.533 4.533 12 H 0.051 0.949 13 C 0.026 3.974 14 N -0.918 5.918 15 Si 0.950 3.050 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.271 1.271 19 C 0.062 3.938 20 C -0.183 4.183 21 C -0.184 4.184 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.028 0.972 27 H 0.342 0.658 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.022 0.978 33 H 0.268 0.732 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 1.571 1.394 8.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 N -0.308 5.308 4 C -0.033 4.033 5 H 0.078 0.922 6 C -0.190 4.190 7 C 0.299 3.701 8 O -0.447 6.447 9 N -0.300 5.300 10 C 0.131 3.869 11 C -0.572 4.572 12 H 0.069 0.931 13 C -0.175 4.175 14 N -0.557 5.557 15 Si 0.776 3.224 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.196 1.196 19 C -0.043 4.043 20 C -0.220 4.220 21 C -0.223 4.223 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.161 0.839 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.151 0.849 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.483 1.939 0.734 8.733 hybrid contribution 1.221 -0.417 0.158 1.300 sum -7.262 1.522 0.891 7.473 Atomic orbital electron populations 1.21696 0.92967 1.02708 1.02358 1.22110 0.97134 0.88091 1.00632 1.60481 1.04966 1.14737 1.50611 1.21367 0.89406 0.94052 0.98436 0.92185 1.21717 1.01929 1.02073 0.93246 1.20836 0.81129 0.90669 0.77498 1.90452 1.56976 1.37896 1.59330 1.47654 1.15383 1.15282 1.51659 1.19194 0.87919 0.83113 0.96709 1.21509 1.17962 1.07606 1.10119 0.93068 1.25555 0.98164 0.94672 0.99062 1.69995 1.35493 1.11642 1.38613 0.85668 0.79252 0.77528 0.79973 1.20139 1.20539 1.19597 1.21819 1.01306 0.81295 0.99867 1.23743 0.98122 1.00897 0.99272 1.23113 1.03167 0.99220 0.96801 0.92575 0.92156 0.90346 0.90952 0.95334 0.83854 0.92848 0.91204 0.91281 0.94841 0.96038 0.92310 0.84931 0.86818 0.86907 0.86800 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 10.17 71.98 0.73 -2.14 16 2 C 0.05 1.29 6.20 86.30 0.54 1.83 16 3 N -0.67 -21.87 6.09 -495.48 -3.02 -24.89 16 4 C 0.08 3.01 2.27 44.17 0.10 3.11 16 5 H 0.06 2.36 5.82 -2.39 -0.01 2.35 16 6 C -0.13 -5.03 9.31 71.98 0.67 -4.36 16 7 C 0.51 21.21 6.47 87.66 0.57 21.78 16 8 O -0.57 -24.48 11.99 -3.04 -0.04 -24.52 16 9 N -0.57 -24.25 2.82 -802.17 -2.26 -26.51 16 10 C 0.25 11.88 4.98 85.63 0.43 12.30 16 11 C -0.53 -27.24 7.22 25.60 0.18 -27.05 16 12 H 0.05 2.71 7.77 -2.91 -0.02 2.69 16 13 C 0.03 1.34 5.46 84.65 0.46 1.80 16 14 N -0.92 -49.52 13.29 21.45 0.28 -49.23 16 15 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 C 0.06 2.31 6.62 44.99 0.30 2.61 16 20 C -0.18 -6.05 9.63 30.62 0.29 -5.76 16 21 C -0.18 -6.46 9.87 30.62 0.30 -6.15 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.91 7.57 -2.39 -0.02 1.89 16 26 H 0.03 0.75 8.05 -2.39 -0.02 0.73 16 27 H 0.34 11.11 7.95 -89.69 -0.71 10.40 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 3.05 5.57 -2.38 -0.01 3.03 16 30 H 0.07 2.35 7.63 -2.39 -0.02 2.34 16 31 H 0.03 1.64 5.73 -2.39 -0.01 1.63 16 32 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 33 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 34 H 0.13 4.61 8.11 -2.39 -0.02 4.59 16 35 H 0.11 4.30 5.22 -5.14 -0.03 4.27 16 36 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.07 2.73 7.59 -2.39 -0.02 2.71 16 Total: -1.00 -56.46 305.50 1.88 -54.58 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.32 Total: 29.19 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.57 Total: -2.03 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -5.00 Total: -100.63 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.04 Total: -24.52 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -56.46 1.88 -54.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707922991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.110 kcal (2) G-P(sol) polarization free energy of solvation -56.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds