Wall clock time and date at job start Mon Mar 30 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47018 * 2 1 4 4 C 1.46901 * 110.99950 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47217 * 35.00218 * 4 3 2 6 6 C 1.53005 * 109.46913 * 275.00139 * 4 3 2 7 7 C 1.50701 * 109.47106 * 155.00388 * 4 3 2 8 8 O 1.21281 * 119.99929 * 26.64101 * 7 4 3 9 9 N 1.34775 * 119.99783 * 206.64295 * 7 4 3 10 10 C 1.46499 * 120.00257 * 185.01704 * 9 7 4 11 11 C 1.53000 * 109.47602 * 177.44054 * 10 9 7 12 12 C 1.50698 * 115.54611 * 64.33179 * 11 10 9 13 13 H 1.08004 * 120.00047 * 266.61575 * 12 11 10 14 14 C 1.37873 * 120.00326 * 86.61461 * 12 11 10 15 15 N 1.31518 * 120.00421 * 182.26320 * 14 12 11 16 16 Si 1.86797 * 119.99723 * 2.26774 * 14 12 11 17 17 H 1.48498 * 109.47281 * 84.87872 * 16 14 12 18 18 H 1.48504 * 109.47053 * 204.87346 * 16 14 12 19 19 H 1.48501 * 109.47267 * 324.87636 * 16 14 12 20 20 C 1.52995 * 117.50077 * 278.66446 * 11 10 9 21 21 C 1.53001 * 117.50037 * 209.99991 * 11 10 9 22 22 H 1.08997 * 109.47133 * 299.99895 * 1 2 3 23 23 H 1.09005 * 109.47121 * 59.99920 * 1 2 3 24 24 H 1.09005 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47133 * 240.00105 * 2 1 3 26 26 H 1.08999 * 109.46713 * 119.99896 * 2 1 3 27 27 H 1.00896 * 111.00205 * 303.95496 * 3 2 1 28 28 H 1.08994 * 109.47046 * 59.59869 * 6 4 3 29 29 H 1.09006 * 109.46974 * 179.59555 * 6 4 3 30 30 H 1.09001 * 109.46995 * 299.58954 * 6 4 3 31 31 H 0.97000 * 120.00199 * 5.02304 * 9 7 4 32 32 H 1.09003 * 109.47333 * 297.44941 * 10 9 7 33 33 H 1.09010 * 109.46605 * 57.43978 * 10 9 7 34 34 H 0.96994 * 120.00349 * 180.02562 * 15 14 12 35 35 H 1.09009 * 117.49957 * 359.97438 * 20 11 10 36 36 H 1.08998 * 117.50437 * 145.02051 * 20 11 10 37 37 H 1.08999 * 117.49422 * 214.98052 * 21 11 10 38 38 H 1.08998 * 117.49680 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8740 0.5923 -0.5885 6 6 4.0007 1.3123 1.4379 7 6 3.9562 2.7248 -0.5998 8 8 3.2467 3.7070 -0.5472 9 7 5.1631 2.7963 -1.1952 10 6 5.6651 4.0841 -1.6809 11 6 7.0726 3.9003 -2.2521 12 6 7.1697 3.0179 -3.4698 13 1 7.3848 1.9654 -3.3583 14 6 6.9838 3.5541 -4.7263 15 7 7.0243 2.7761 -5.7860 16 14 6.6746 5.3857 -4.9237 17 1 7.9728 6.1057 -4.9613 18 1 5.9366 5.6295 -6.1892 19 1 5.8685 5.8780 -3.7778 20 6 8.2383 3.8682 -1.2617 21 6 8.0321 5.0886 -2.1624 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6441 1.9013 -0.7813 28 1 3.6562 0.3749 1.8745 29 1 5.0905 1.3341 1.4378 30 1 3.6206 2.1482 2.0253 31 1 5.6995 1.9952 -1.3021 32 1 5.0031 4.4616 -2.4603 33 1 5.6978 4.7958 -0.8559 34 1 6.8940 3.1534 -6.6700 35 1 8.0026 3.9784 -0.2031 36 1 9.0756 3.2092 -1.4910 37 1 8.7339 5.2319 -2.9841 38 1 7.6606 6.0015 -1.6969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707981460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:19 Heat of formation + Delta-G solvation = -20.401020 kcal Electronic energy + Delta-G solvation = -17538.960828 eV Core-core repulsion = 14802.854915 eV Total energy + Delta-G solvation = -2736.105913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54075 -37.28899 -36.16996 -33.49710 -32.18426 -31.99496 -28.28715 -26.90879 -25.41219 -23.39972 -21.84345 -21.61316 -19.76534 -19.11000 -17.07294 -16.42012 -16.03179 -15.33552 -14.93142 -14.72220 -14.51187 -14.02016 -13.55536 -13.13662 -12.88181 -12.65581 -12.52523 -12.31073 -11.97739 -11.89684 -11.65456 -11.44152 -11.20804 -11.07929 -10.83614 -10.51520 -10.22334 -9.73373 -9.31920 -9.21966 -8.72690 -8.59374 -8.47540 -8.32203 -6.20195 -4.25261 3.03624 3.26027 3.36154 3.40354 3.55975 4.21106 4.36305 4.79370 5.00338 5.07134 5.09083 5.11651 5.28055 5.34207 5.44091 5.63045 5.64323 5.77329 5.83431 5.90002 5.97899 6.03019 6.07491 6.20933 6.23398 6.38805 6.47424 6.66825 6.91636 6.95258 7.03490 7.10762 7.35195 7.63466 8.13209 8.36220 8.71485 8.79341 9.42973 10.91017 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027813 B = 0.006091 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.468418 B = 4595.993643 C = 4978.511801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 N -0.671 5.671 4 C 0.068 3.932 5 H 0.064 0.936 6 C -0.131 4.131 7 C 0.502 3.498 8 O -0.545 6.545 9 N -0.700 5.700 10 C 0.156 3.844 11 C -0.017 4.017 12 C -0.492 4.492 13 H 0.078 0.922 14 C 0.080 3.920 15 N -0.895 5.895 16 Si 0.881 3.119 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.259 1.259 20 C -0.177 4.177 21 C -0.195 4.195 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.351 0.649 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.404 0.596 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -4.170 11.008 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.306 5.306 4 C -0.045 4.045 5 H 0.082 0.918 6 C -0.189 4.189 7 C 0.286 3.714 8 O -0.423 6.423 9 N -0.350 5.350 10 C 0.032 3.968 11 C -0.018 4.018 12 C -0.529 4.529 13 H 0.096 0.904 14 C -0.123 4.123 15 N -0.531 5.531 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.184 1.184 20 C -0.215 4.215 21 C -0.233 4.233 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.171 0.829 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.239 0.761 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.499 -3.390 11.508 13.644 hybrid contribution 0.400 0.341 -1.339 1.438 sum -6.099 -3.049 10.169 12.243 Atomic orbital electron populations 1.21751 0.94865 1.01532 1.02569 1.22012 0.95801 0.89394 1.00524 1.60402 1.05637 1.13274 1.51265 1.21479 0.89561 0.95365 0.98108 0.91846 1.21673 1.00374 1.02785 0.94111 1.20534 0.81926 0.90268 0.78637 1.90670 1.54704 1.37780 1.59102 1.45897 1.18473 1.12521 1.58082 1.21135 0.95552 0.83396 0.96667 1.19627 0.86709 0.98051 0.97390 1.20172 1.49762 0.95621 0.87348 0.90404 1.24969 0.93656 0.97985 0.95675 1.69880 1.49014 1.35682 0.98554 0.86850 0.78812 0.85889 0.77576 1.20193 1.22142 1.18378 1.22840 1.02522 1.01432 0.94664 1.22974 1.05264 0.92170 1.02850 0.91796 0.92736 0.92243 0.95166 0.90973 0.82946 0.91935 0.91923 0.91451 0.76075 0.91845 0.93705 0.92425 0.90867 0.89389 0.89081 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.17 37.16 0.38 -1.02 16 2 C 0.05 0.56 6.20 -3.83 -0.02 0.53 16 3 N -0.67 -9.13 6.09 -107.95 -0.66 -9.79 16 4 C 0.07 0.95 3.01 -68.86 -0.21 0.74 16 5 H 0.06 0.81 7.80 -51.93 -0.41 0.41 16 6 C -0.13 -1.57 9.40 37.16 0.35 -1.22 16 7 C 0.50 9.00 6.82 -10.99 -0.07 8.92 16 8 O -0.54 -11.67 16.28 5.56 0.09 -11.58 16 9 N -0.70 -12.91 5.47 -60.29 -0.33 -13.24 16 10 C 0.16 3.28 5.22 -4.04 -0.02 3.26 16 11 C -0.02 -0.36 0.87 -155.66 -0.14 -0.50 16 12 C -0.49 -12.75 9.18 -34.44 -0.32 -13.07 16 13 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 14 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 15 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 16 Si 0.88 21.36 24.71 -169.99 -4.20 17.16 16 17 H -0.28 -6.51 7.01 56.52 0.40 -6.11 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.26 -6.10 6.05 56.52 0.34 -5.76 16 20 C -0.18 -3.35 9.96 -26.69 -0.27 -3.61 16 21 C -0.19 -3.96 7.58 -26.69 -0.20 -4.17 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.32 8.06 -51.93 -0.42 -0.09 16 26 H 0.07 0.71 7.43 -51.93 -0.39 0.33 16 27 H 0.35 5.19 7.97 -39.29 -0.31 4.88 16 28 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.40 6.94 8.33 -40.82 -0.34 6.60 16 32 H 0.06 1.49 6.85 -51.93 -0.36 1.13 16 33 H 0.04 0.91 8.10 -51.92 -0.42 0.49 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.09 1.95 7.02 -51.93 -0.36 1.58 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -29.87 311.07 -6.65 -36.52 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.39 Total: 9.73 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.62 Total: -8.03 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.21 Total: -48.49 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.20 Total: 17.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.87 -6.65 -36.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707981460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.121 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds