Wall clock time and date at job start Mon Mar 30 2020 04:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47018 * 2 1 4 4 C 1.46901 * 110.99950 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47217 * 35.00218 * 4 3 2 6 6 C 1.53005 * 109.46913 * 275.00139 * 4 3 2 7 7 C 1.50701 * 109.47106 * 155.00388 * 4 3 2 8 8 O 1.21281 * 119.99929 * 26.64101 * 7 4 3 9 9 N 1.34775 * 119.99783 * 206.64295 * 7 4 3 10 10 C 1.46499 * 120.00257 * 185.01704 * 9 7 4 11 11 C 1.53000 * 109.47602 * 177.44054 * 10 9 7 12 12 C 1.50698 * 115.54611 * 64.33179 * 11 10 9 13 13 H 1.08004 * 120.00047 * 266.61575 * 12 11 10 14 14 C 1.37873 * 120.00326 * 86.61461 * 12 11 10 15 15 N 1.31518 * 120.00421 * 182.26320 * 14 12 11 16 16 Si 1.86797 * 119.99723 * 2.26774 * 14 12 11 17 17 H 1.48498 * 109.47281 * 84.87872 * 16 14 12 18 18 H 1.48504 * 109.47053 * 204.87346 * 16 14 12 19 19 H 1.48501 * 109.47267 * 324.87636 * 16 14 12 20 20 C 1.52995 * 117.50077 * 278.66446 * 11 10 9 21 21 C 1.53001 * 117.50037 * 209.99991 * 11 10 9 22 22 H 1.08997 * 109.47133 * 299.99895 * 1 2 3 23 23 H 1.09005 * 109.47121 * 59.99920 * 1 2 3 24 24 H 1.09005 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47133 * 240.00105 * 2 1 3 26 26 H 1.08999 * 109.46713 * 119.99896 * 2 1 3 27 27 H 1.00896 * 111.00205 * 303.95496 * 3 2 1 28 28 H 1.08994 * 109.47046 * 59.59869 * 6 4 3 29 29 H 1.09006 * 109.46974 * 179.59555 * 6 4 3 30 30 H 1.09001 * 109.46995 * 299.58954 * 6 4 3 31 31 H 0.97000 * 120.00199 * 5.02304 * 9 7 4 32 32 H 1.09003 * 109.47333 * 297.44941 * 10 9 7 33 33 H 1.09010 * 109.46605 * 57.43978 * 10 9 7 34 34 H 0.96994 * 120.00349 * 180.02562 * 15 14 12 35 35 H 1.09009 * 117.49957 * 359.97438 * 20 11 10 36 36 H 1.08998 * 117.50437 * 145.02051 * 20 11 10 37 37 H 1.08999 * 117.49422 * 214.98052 * 21 11 10 38 38 H 1.08998 * 117.49680 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8740 0.5923 -0.5885 6 6 4.0007 1.3123 1.4379 7 6 3.9562 2.7248 -0.5998 8 8 3.2467 3.7070 -0.5472 9 7 5.1631 2.7963 -1.1952 10 6 5.6651 4.0841 -1.6809 11 6 7.0726 3.9003 -2.2521 12 6 7.1697 3.0179 -3.4698 13 1 7.3848 1.9654 -3.3583 14 6 6.9838 3.5541 -4.7263 15 7 7.0243 2.7761 -5.7860 16 14 6.6746 5.3857 -4.9237 17 1 7.9728 6.1057 -4.9613 18 1 5.9366 5.6295 -6.1892 19 1 5.8685 5.8780 -3.7778 20 6 8.2383 3.8682 -1.2617 21 6 8.0321 5.0886 -2.1624 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6441 1.9013 -0.7813 28 1 3.6562 0.3749 1.8745 29 1 5.0905 1.3341 1.4378 30 1 3.6206 2.1482 2.0253 31 1 5.6995 1.9952 -1.3021 32 1 5.0031 4.4616 -2.4603 33 1 5.6978 4.7958 -0.8559 34 1 6.8940 3.1534 -6.6700 35 1 8.0026 3.9784 -0.2031 36 1 9.0756 3.2092 -1.4910 37 1 8.7339 5.2319 -2.9841 38 1 7.6606 6.0015 -1.6969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707981460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:18 Heat of formation + Delta-G solvation = -42.644807 kcal Electronic energy + Delta-G solvation = -17539.925391 eV Core-core repulsion = 14802.854915 eV Total energy + Delta-G solvation = -2737.070476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96776 -38.88149 -37.32280 -35.05231 -34.23584 -32.98180 -29.24718 -28.52297 -27.29150 -24.55955 -23.36216 -22.64234 -21.31100 -20.73211 -18.64097 -18.00486 -17.33956 -16.97785 -16.36311 -16.12410 -15.69335 -15.48622 -14.84110 -14.74420 -14.43007 -14.22871 -13.90528 -13.52054 -13.20252 -13.11445 -12.89010 -12.68016 -12.51968 -12.36622 -12.18735 -12.00952 -11.94936 -11.58942 -11.01898 -10.84281 -10.67597 -10.31980 -9.92392 -9.48664 -8.31961 -6.38257 1.32601 1.38344 1.47332 1.62302 2.18392 2.34665 3.03180 3.14008 3.24290 3.77264 4.01279 4.12364 4.17754 4.24545 4.34989 4.40316 4.43570 4.51565 4.63421 4.76297 4.79540 4.85933 4.89948 5.01000 5.08572 5.10241 5.27066 5.28213 5.34037 5.47452 5.54152 5.68170 5.95121 6.25199 6.26387 6.66640 6.72862 7.27559 7.32952 8.82440 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027813 B = 0.006091 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.468418 B = 4595.993643 C = 4978.511801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 N -0.681 5.681 4 C 0.074 3.926 5 H 0.078 0.922 6 C -0.125 4.125 7 C 0.501 3.499 8 O -0.582 6.582 9 N -0.699 5.699 10 C 0.165 3.835 11 C -0.041 4.041 12 C -0.478 4.478 13 H 0.047 0.953 14 C 0.027 3.973 15 N -0.943 5.943 16 Si 0.929 3.071 17 H -0.262 1.262 18 H -0.304 1.304 19 H -0.248 1.248 20 C -0.149 4.149 21 C -0.196 4.196 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.340 0.660 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.411 0.589 32 H 0.032 0.968 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 -4.154 13.081 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.315 5.315 4 C -0.039 4.039 5 H 0.095 0.905 6 C -0.184 4.184 7 C 0.287 3.713 8 O -0.462 6.462 9 N -0.349 5.349 10 C 0.040 3.960 11 C -0.042 4.042 12 C -0.516 4.516 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.583 5.583 16 Si 0.755 3.245 17 H -0.187 1.187 18 H -0.231 1.231 19 H -0.172 1.172 20 C -0.186 4.186 21 C -0.233 4.233 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.159 0.841 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.247 0.753 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.385 -3.392 13.616 15.416 hybrid contribution 0.371 0.249 -1.943 1.993 sum -6.014 -3.143 11.673 13.502 Atomic orbital electron populations 1.21735 0.93919 1.02644 1.02071 1.22132 0.96625 0.87853 1.01213 1.60514 1.05290 1.14913 1.50801 1.21536 0.89987 0.93127 0.99262 0.90452 1.21670 1.00992 1.03389 0.92304 1.21254 0.81058 0.91297 0.77660 1.90648 1.55572 1.39553 1.60448 1.45887 1.18962 1.12004 1.58014 1.20866 0.94213 0.84746 0.96131 1.19458 0.88159 0.99250 0.97347 1.20351 1.47440 0.94940 0.88869 0.93449 1.25687 0.94134 1.01606 0.95670 1.70007 1.51792 1.37422 0.99038 0.86054 0.79241 0.81837 0.77318 1.18740 1.23148 1.17153 1.22877 1.00221 0.99853 0.95624 1.23039 1.04067 0.93089 1.03133 0.92134 0.93401 0.90312 0.95044 0.89548 0.84139 0.89639 0.90857 0.92832 0.75342 0.94925 0.92451 0.92673 0.87819 0.89429 0.90264 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.17 71.98 0.73 -1.76 16 2 C 0.05 0.98 6.20 86.30 0.54 1.51 16 3 N -0.68 -17.67 6.09 -495.45 -3.02 -20.69 16 4 C 0.07 1.93 3.01 44.17 0.13 2.06 16 5 H 0.08 1.82 7.80 -2.39 -0.02 1.80 16 6 C -0.13 -2.68 9.40 71.98 0.68 -2.00 16 7 C 0.50 17.48 6.82 87.66 0.60 18.08 16 8 O -0.58 -24.76 16.28 -3.03 -0.05 -24.81 16 9 N -0.70 -25.01 5.47 -463.05 -2.53 -27.54 16 10 C 0.16 6.71 5.22 86.38 0.45 7.16 16 11 C -0.04 -1.72 0.87 -52.93 -0.05 -1.77 16 12 C -0.48 -24.91 9.18 25.60 0.24 -24.68 16 13 H 0.05 2.70 8.06 -2.91 -0.02 2.67 16 14 C 0.03 1.52 5.47 84.65 0.46 1.98 16 15 N -0.94 -56.75 13.96 21.45 0.30 -56.45 16 16 Si 0.93 43.99 24.71 68.60 1.70 45.68 16 17 H -0.26 -11.74 7.01 99.48 0.70 -11.04 16 18 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 19 H -0.25 -11.17 6.05 99.48 0.60 -10.57 16 20 C -0.15 -5.14 9.96 30.62 0.30 -4.84 16 21 C -0.20 -7.41 7.58 30.62 0.23 -7.18 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.03 0.61 8.06 -2.39 -0.02 0.59 16 26 H 0.09 1.44 7.43 -2.39 -0.02 1.43 16 27 H 0.34 9.97 7.97 -89.70 -0.71 9.26 16 28 H 0.08 1.44 7.44 -2.39 -0.02 1.43 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.41 13.61 8.33 -92.71 -0.77 12.84 16 32 H 0.03 1.52 6.85 -2.39 -0.02 1.50 16 33 H 0.06 2.19 8.10 -2.38 -0.02 2.17 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 36 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.08 3.20 7.02 -2.39 -0.02 3.19 16 38 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -64.91 311.07 0.16 -64.76 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.56 Total: 30.48 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.32 Total: -11.42 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -5.25 Total: -104.69 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.70 Total: 45.68 kcal Total: -64.91 0.16 -64.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707981460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.112 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds