Wall clock time and date at job start Mon Mar 30 2020 04:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46905 * 109.46988 * 2 1 4 4 C 1.46900 * 111.00050 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47092 * 325.00292 * 4 3 2 6 6 C 1.53006 * 109.46954 * 85.00138 * 4 3 2 7 7 C 1.50700 * 109.47139 * 205.00006 * 4 3 2 8 8 O 1.21276 * 119.99954 * 0.02562 * 7 4 3 9 9 N 1.34775 * 119.99901 * 180.02562 * 7 4 3 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 4 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 187.13201 * 14 12 11 17 17 H 1.48503 * 109.46796 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47212 * 300.00012 * 16 14 12 19 19 H 1.48498 * 109.47212 * 60.00416 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 H 1.09005 * 109.47290 * 299.99776 * 1 2 3 23 23 H 1.09004 * 109.47782 * 59.99817 * 1 2 3 24 24 H 1.09004 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47087 * 240.00681 * 2 1 3 26 26 H 1.08997 * 109.47632 * 119.99823 * 2 1 3 27 27 H 1.00899 * 110.99947 * 303.95478 * 3 2 1 28 28 H 1.09004 * 109.46887 * 60.00163 * 6 4 3 29 29 H 1.09001 * 109.46974 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.47024 * 300.00344 * 6 4 3 31 31 H 0.97003 * 119.99966 * 359.97438 * 9 7 4 32 32 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 33 33 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 34 34 H 0.96995 * 119.99933 * 355.39984 * 15 14 12 35 35 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 36 36 H 1.09003 * 117.49971 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.50031 * 359.97438 * 21 11 10 38 38 H 1.09005 * 117.49813 * 144.97487 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4880 1.4243 0.0006 5 1 3.8735 0.5926 0.5903 6 6 4.0018 1.3120 -1.4362 7 6 3.9556 2.7250 0.6011 8 8 3.1453 3.5390 0.9906 9 7 5.2741 2.9837 0.7052 10 6 5.7287 4.2480 1.2895 11 6 7.2522 4.3401 1.1837 12 6 8.0207 3.2765 1.9247 13 1 8.3494 2.3878 1.4064 14 6 8.3043 3.4380 3.2643 15 7 7.7869 4.4481 3.9288 16 14 9.4235 2.2221 4.1352 17 1 9.5678 2.6151 5.5600 18 1 8.8340 0.8615 4.0547 19 1 10.7578 2.2229 3.4834 20 6 7.8395 4.8464 -0.1354 21 6 7.8720 5.7370 1.1091 22 1 -0.3634 0.5138 0.8900 23 1 -0.3635 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.6440 1.9013 -0.7813 28 1 3.6163 2.1438 -2.0259 29 1 5.0914 1.3416 -1.4358 30 1 3.6636 0.3713 -1.8705 31 1 5.9222 2.3325 0.3940 32 1 5.4340 4.2904 2.3380 33 1 5.2760 5.0806 0.7509 34 1 7.2605 5.1164 3.4629 35 1 8.7816 4.4101 -0.4672 36 1 7.1403 5.1142 -0.9277 37 1 7.1942 6.5904 1.1350 38 1 8.8354 5.8868 1.5965 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707981461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:21 Heat of formation + Delta-G solvation = -49.040979 kcal Electronic energy + Delta-G solvation = -17530.039501 eV Core-core repulsion = 14792.691667 eV Total energy + Delta-G solvation = -2737.347835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86588 -38.87620 -37.47780 -35.05030 -33.94250 -32.98966 -29.10804 -27.99293 -26.89775 -24.70556 -23.13269 -22.93831 -21.56200 -20.92955 -18.81780 -17.88346 -17.15764 -16.69063 -16.17482 -15.77150 -15.62790 -15.55612 -14.85451 -14.68152 -14.41652 -14.21166 -13.90473 -13.52124 -13.27932 -12.85042 -12.77788 -12.60857 -12.55377 -12.41063 -12.23512 -12.01227 -11.95276 -11.50909 -10.83451 -10.55373 -10.44380 -10.27193 -9.89352 -9.33327 -8.51971 -6.27929 1.56959 1.63422 1.74808 1.81578 2.21521 2.60593 3.19893 3.25305 3.34453 3.81456 3.99980 4.05856 4.10175 4.25902 4.36195 4.39730 4.44373 4.55269 4.59549 4.69463 4.74741 4.82686 4.86048 4.97207 5.05602 5.11730 5.13338 5.33640 5.34396 5.44227 5.59840 5.97754 6.14384 6.26824 6.40088 6.69189 6.79288 7.40022 7.56131 8.87632 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025974 B = 0.005881 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.732092 B = 4760.278002 C = 5233.473325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 N -0.689 5.689 4 C 0.078 3.922 5 H 0.112 0.888 6 C -0.168 4.168 7 C 0.502 3.498 8 O -0.584 6.584 9 N -0.699 5.699 10 C 0.175 3.825 11 C -0.018 4.018 12 C -0.575 4.575 13 H 0.056 0.944 14 C -0.021 4.021 15 N -0.933 5.933 16 Si 1.109 2.891 17 H -0.294 1.294 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.161 4.161 21 C -0.181 4.181 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.348 0.652 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.409 0.591 32 H 0.018 0.982 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 -9.995 -11.782 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 N -0.322 5.322 4 C -0.036 4.036 5 H 0.130 0.870 6 C -0.227 4.227 7 C 0.289 3.711 8 O -0.464 6.464 9 N -0.350 5.350 10 C 0.050 3.950 11 C -0.019 4.019 12 C -0.613 4.613 13 H 0.075 0.925 14 C -0.221 4.221 15 N -0.569 5.569 16 Si 0.933 3.067 17 H -0.220 1.220 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.198 4.198 21 C -0.219 4.219 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.167 0.833 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.245 0.755 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.985 -9.739 -9.347 15.199 hybrid contribution -0.135 0.511 -2.004 2.073 sum -7.120 -9.228 -11.351 16.269 Atomic orbital electron populations 1.21739 0.94032 1.02612 1.02031 1.22041 0.96485 0.87646 1.01169 1.60045 1.05480 1.15158 1.51506 1.21390 0.89952 0.94135 0.98097 0.87005 1.22372 1.02957 1.03588 0.93797 1.21409 0.81771 0.89484 0.78438 1.90619 1.54667 1.50266 1.50831 1.45813 1.06843 1.20495 1.61813 1.20578 0.94365 0.85051 0.94991 1.19335 0.90062 0.94552 0.97960 1.21466 1.37635 1.05337 0.96839 0.92536 1.27038 0.97982 1.00883 0.96197 1.70840 1.33250 1.13683 1.39124 0.83019 0.75097 0.73825 0.74809 1.21991 1.19689 1.19558 1.22896 1.02394 1.03893 0.90588 1.22695 1.01595 0.94409 1.03196 0.93404 0.92252 0.90294 0.93177 0.91445 0.83275 0.92179 0.90663 0.89213 0.75493 0.96348 0.94310 0.92588 0.89351 0.89053 0.90392 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.17 71.98 0.73 -1.69 16 2 C 0.05 1.03 6.20 86.30 0.54 1.57 16 3 N -0.69 -17.69 5.74 -495.45 -2.84 -20.53 16 4 C 0.08 2.05 3.00 44.17 0.13 2.18 16 5 H 0.11 2.73 7.80 -2.39 -0.02 2.71 16 6 C -0.17 -3.23 9.06 71.98 0.65 -2.58 16 7 C 0.50 18.96 7.22 87.66 0.63 19.59 16 8 O -0.58 -27.36 16.43 -3.02 -0.05 -27.41 16 9 N -0.70 -27.10 5.35 -463.06 -2.48 -29.58 16 10 C 0.18 8.09 5.43 86.38 0.47 8.55 16 11 C -0.02 -0.85 0.99 -52.93 -0.05 -0.90 16 12 C -0.58 -29.44 8.44 25.60 0.22 -29.23 16 13 H 0.06 2.79 7.82 -2.91 -0.02 2.77 16 14 C -0.02 -1.12 5.39 84.66 0.46 -0.67 16 15 N -0.93 -55.37 13.57 21.45 0.29 -55.08 16 16 Si 1.11 48.18 29.91 68.60 2.05 50.24 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 C -0.16 -6.29 9.96 30.62 0.30 -5.99 16 21 C -0.18 -8.07 8.74 30.62 0.27 -7.80 16 22 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 23 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.05 0.74 7.44 -2.39 -0.02 0.72 16 26 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 27 H 0.35 8.36 8.47 -89.70 -0.76 7.60 16 28 H 0.06 1.20 8.13 -2.38 -0.02 1.18 16 29 H 0.07 1.41 7.56 -2.39 -0.02 1.39 16 30 H 0.09 1.27 7.45 -2.39 -0.02 1.26 16 31 H 0.41 14.23 7.64 -92.71 -0.71 13.52 16 32 H 0.02 0.99 7.82 -2.39 -0.02 0.98 16 33 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 34 H 0.26 15.84 6.19 -92.71 -0.57 15.26 16 35 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 38 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -67.19 316.39 1.09 -66.10 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.23 Total: 33.22 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.35 Total: -16.95 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -5.03 Total: -105.19 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.05 Total: 50.24 kcal Total: -67.19 1.09 -66.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707981461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.055 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds