Wall clock time and date at job start Mon Mar 30 2020 03:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.46877 * 2 1 4 4 C 1.50707 * 109.46954 * 239.99917 * 2 1 3 5 5 H 1.07994 * 119.99789 * 239.99680 * 4 2 1 6 6 C 1.37878 * 120.00067 * 59.99889 * 4 2 1 7 7 N 1.31517 * 119.99546 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00097 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46931 * 60.00277 * 8 6 4 10 10 H 1.48503 * 109.47028 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46980 * 300.00183 * 8 6 4 12 12 N 1.46899 * 109.47049 * 120.00060 * 2 1 3 13 13 C 1.45554 * 111.00001 * 327.68214 * 12 2 1 14 14 C 1.53017 * 110.85698 * 300.53107 * 13 12 2 15 15 N 1.47252 * 108.58755 * 274.27886 * 14 13 12 16 16 C 1.33637 * 120.10362 * 70.66354 * 15 14 13 17 17 O 1.21275 * 120.04973 * 179.78195 * 16 15 14 18 18 C 1.51490 * 119.89381 * 359.76508 * 16 15 14 19 19 C 1.45591 * 110.99816 * 197.09298 * 12 2 1 20 20 C 1.52993 * 109.23058 * 180.02562 * 19 12 2 21 21 C 1.52998 * 109.23365 * 299.38702 * 19 12 2 22 22 H 1.08997 * 109.47100 * 306.51430 * 1 2 3 23 23 H 1.09003 * 109.47165 * 186.51208 * 1 2 3 24 24 H 1.09002 * 109.47367 * 66.51813 * 1 2 3 25 25 H 0.97004 * 119.99743 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.20215 * 60.89351 * 13 12 2 27 27 H 1.09005 * 109.20080 * 180.18388 * 13 12 2 28 28 H 1.09000 * 109.60957 * 154.55216 * 14 13 12 29 29 H 1.08998 * 109.76501 * 34.10239 * 14 13 12 30 30 H 0.97003 * 119.95358 * 250.69315 * 15 14 13 31 31 H 1.09005 * 109.68145 * 170.26939 * 18 16 15 32 32 H 1.09004 * 109.68262 * 49.72091 * 18 16 15 33 33 H 1.09005 * 109.47281 * 60.00521 * 20 19 12 34 34 H 1.09006 * 109.47016 * 179.97438 * 20 19 12 35 35 H 1.08998 * 109.47713 * 299.99905 * 20 19 12 36 36 H 1.08998 * 109.47293 * 59.99732 * 21 19 12 37 37 H 1.09004 * 109.46757 * 180.02562 * 21 19 12 38 38 H 1.09004 * 109.46982 * 299.99695 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0196 -0.6925 1.1994 13 6 1.1108 -0.5007 2.3201 14 6 0.9580 0.9858 2.6493 15 7 2.0485 1.3801 3.5568 16 6 3.3034 1.4559 3.1036 17 8 4.2002 1.7846 3.8509 18 6 3.6039 1.1303 1.6549 19 6 3.4184 -0.3759 1.4501 20 6 3.8858 -1.1169 2.7044 21 6 4.2598 -0.8295 0.2555 22 1 -0.3633 0.6115 0.8259 23 1 -0.3633 -1.0211 0.1166 24 1 -0.3634 0.4095 -0.9426 25 1 0.7094 1.1618 -3.4844 26 1 0.1348 -0.9136 2.0649 27 1 1.5029 -1.0226 3.1930 28 1 -0.0025 1.1559 3.1357 29 1 1.0135 1.5739 1.7332 30 1 1.8558 1.5848 4.4852 31 1 4.6316 1.4088 1.4216 32 1 2.9188 1.6762 1.0062 33 1 3.7754 -2.1909 2.5544 34 1 4.9331 -0.8829 2.8956 35 1 3.2821 -0.8051 3.5568 36 1 3.9234 -0.3123 -0.6431 37 1 5.3082 -0.5946 0.4394 38 1 4.1472 -1.9051 0.1193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708102527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:49 Heat of formation + Delta-G solvation = -11.199703 kcal Electronic energy + Delta-G solvation = -19281.964584 eV Core-core repulsion = 16546.257670 eV Total energy + Delta-G solvation = -2735.706914 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57984 -37.74344 -34.82713 -33.75705 -32.15241 -29.21201 -27.82133 -27.07779 -26.68189 -24.72067 -22.89370 -20.53158 -19.52865 -17.98474 -16.96186 -16.84178 -15.72766 -15.37355 -14.89811 -14.57723 -14.08613 -13.48582 -13.11991 -12.82454 -12.47143 -12.18547 -11.95430 -11.81461 -11.47898 -11.30964 -11.09185 -10.98995 -10.74672 -10.63890 -10.45246 -10.37933 -10.18649 -9.99329 -9.55010 -9.33290 -9.03276 -8.82462 -8.39502 -7.08922 -6.04572 -4.04402 3.02053 3.30194 3.35354 3.38308 3.63112 4.36216 4.72165 4.93380 5.23342 5.35046 5.42382 5.50369 5.61447 5.69842 5.76301 5.93020 6.05735 6.17649 6.32409 6.45134 6.48681 6.51679 6.60178 6.65553 6.82915 6.90025 6.99360 7.09133 7.35626 7.45030 7.53994 7.69751 7.83926 8.26150 8.29907 8.55298 8.57467 8.98288 9.55995 11.00979 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.009040 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.422817 B = 3096.542641 C = 3438.041429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.209 3.791 3 H 0.012 0.988 4 C -0.493 4.493 5 H 0.072 0.928 6 C 0.055 3.945 7 N -0.895 5.895 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.277 1.277 12 N -0.542 5.542 13 C 0.047 3.953 14 C 0.065 3.935 15 N -0.729 5.729 16 C 0.528 3.472 17 O -0.567 6.567 18 C -0.176 4.176 19 C 0.144 3.856 20 C -0.148 4.148 21 C -0.146 4.146 22 H 0.012 0.988 23 H 0.034 0.966 24 H 0.089 0.911 25 H 0.260 0.740 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.392 0.608 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.032 0.968 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 -0.945 7.528 7.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.104 3.896 3 H 0.029 0.971 4 C -0.532 4.532 5 H 0.090 0.910 6 C -0.146 4.146 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.202 1.202 12 N -0.265 5.265 13 C -0.083 4.083 14 C -0.060 4.060 15 N -0.381 5.381 16 C 0.316 3.684 17 O -0.447 6.447 18 C -0.218 4.218 19 C 0.053 3.947 20 C -0.206 4.206 21 C -0.203 4.203 22 H 0.031 0.969 23 H 0.053 0.947 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.227 0.773 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.051 0.949 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.063 -1.183 7.460 7.553 hybrid contribution 0.005 0.527 -0.315 0.614 sum 0.068 -0.656 7.145 7.175 Atomic orbital electron populations 1.22147 0.98131 0.98749 1.01585 1.19343 0.91671 0.92554 0.85991 0.97073 1.21319 1.30244 1.12350 0.89248 0.90979 1.24937 0.95435 0.95245 0.98945 1.69857 1.36983 1.23076 1.23530 0.86644 0.79218 0.79772 0.82315 1.20335 1.21553 1.20242 1.60130 0.99667 1.61995 1.04698 1.22304 0.98655 0.92778 0.94556 1.22854 0.89146 0.99322 0.94706 1.46094 1.07993 1.70323 1.13721 1.20747 0.81920 0.74708 0.91039 1.90672 1.45426 1.49140 1.59428 1.22930 1.04746 1.01620 0.92520 1.20351 0.89643 0.89008 0.95653 1.22117 1.00550 1.01049 0.96845 1.22394 0.95788 1.02333 0.99748 0.96874 0.94675 0.89219 0.92973 0.89483 0.91588 0.90175 0.89496 0.77286 0.88910 0.87967 0.91918 0.92672 0.93171 0.87476 0.94873 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 7.61 37.16 0.28 -2.85 16 2 C 0.21 4.58 1.20 -68.86 -0.08 4.50 16 3 H 0.01 0.28 4.91 -51.93 -0.25 0.03 16 4 C -0.49 -12.07 5.92 -34.44 -0.20 -12.27 16 5 H 0.07 1.78 5.78 -52.49 -0.30 1.48 16 6 C 0.06 1.40 5.28 -17.82 -0.09 1.31 16 7 N -0.89 -23.64 11.29 55.43 0.63 -23.01 16 8 Si 0.89 20.21 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.54 -10.26 4.11 -214.44 -0.88 -11.15 16 13 C 0.05 0.74 4.79 -4.54 -0.02 0.72 16 14 C 0.07 0.95 5.14 -3.62 -0.02 0.93 16 15 N -0.73 -10.83 5.01 -59.76 -0.30 -11.13 16 16 C 0.53 9.45 5.11 -11.10 -0.06 9.40 16 17 O -0.57 -11.76 17.93 5.56 0.10 -11.66 16 18 C -0.18 -3.21 4.72 -27.42 -0.13 -3.34 16 19 C 0.14 2.61 0.64 -132.24 -0.08 2.53 16 20 C -0.15 -2.46 7.25 37.15 0.27 -2.19 16 21 C -0.15 -2.74 6.90 37.16 0.26 -2.49 16 22 H 0.01 0.23 5.29 -51.93 -0.27 -0.05 16 23 H 0.03 0.73 7.62 -51.93 -0.40 0.33 16 24 H 0.09 2.17 5.92 -51.93 -0.31 1.86 16 25 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.09 1.36 6.25 -51.93 -0.32 1.04 16 27 H 0.07 1.00 6.08 -51.93 -0.32 0.69 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.46 4.75 -51.93 -0.25 1.22 16 30 H 0.39 5.03 8.92 -40.82 -0.36 4.67 16 31 H 0.09 1.66 7.88 -51.93 -0.41 1.25 16 32 H 0.10 1.99 4.67 -51.93 -0.24 1.74 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.83 4.91 -51.93 -0.25 0.57 16 36 H 0.11 2.30 5.15 -51.93 -0.27 2.04 16 37 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.06 1.08 7.51 -51.93 -0.39 0.69 16 LS Contribution 270.22 15.07 4.07 4.07 Total: -1.00 -27.30 270.22 -6.46 -33.76 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.17 Total: 7.68 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 0.12 Total: -3.76 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.55 Total: -45.29 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.10 Total: -11.66 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.30 -6.46 -33.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708102527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.565 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds