Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.46877 * 2 1 4 4 C 1.50707 * 109.46954 * 239.99917 * 2 1 3 5 5 H 1.07994 * 119.99789 * 239.99680 * 4 2 1 6 6 C 1.37878 * 120.00067 * 59.99889 * 4 2 1 7 7 N 1.31517 * 119.99546 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00097 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46931 * 60.00277 * 8 6 4 10 10 H 1.48503 * 109.47028 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46980 * 300.00183 * 8 6 4 12 12 N 1.46899 * 109.47049 * 120.00060 * 2 1 3 13 13 C 1.45554 * 111.00001 * 327.68214 * 12 2 1 14 14 C 1.53017 * 110.85698 * 300.53107 * 13 12 2 15 15 N 1.47252 * 108.58755 * 274.27886 * 14 13 12 16 16 C 1.33637 * 120.10362 * 70.66354 * 15 14 13 17 17 O 1.21275 * 120.04973 * 179.78195 * 16 15 14 18 18 C 1.51490 * 119.89381 * 359.76508 * 16 15 14 19 19 C 1.45591 * 110.99816 * 197.09298 * 12 2 1 20 20 C 1.52993 * 109.23058 * 180.02562 * 19 12 2 21 21 C 1.52998 * 109.23365 * 299.38702 * 19 12 2 22 22 H 1.08997 * 109.47100 * 306.51430 * 1 2 3 23 23 H 1.09003 * 109.47165 * 186.51208 * 1 2 3 24 24 H 1.09002 * 109.47367 * 66.51813 * 1 2 3 25 25 H 0.97004 * 119.99743 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.20215 * 60.89351 * 13 12 2 27 27 H 1.09005 * 109.20080 * 180.18388 * 13 12 2 28 28 H 1.09000 * 109.60957 * 154.55216 * 14 13 12 29 29 H 1.08998 * 109.76501 * 34.10239 * 14 13 12 30 30 H 0.97003 * 119.95358 * 250.69315 * 15 14 13 31 31 H 1.09005 * 109.68145 * 170.26939 * 18 16 15 32 32 H 1.09004 * 109.68262 * 49.72091 * 18 16 15 33 33 H 1.09005 * 109.47281 * 60.00521 * 20 19 12 34 34 H 1.09006 * 109.47016 * 179.97438 * 20 19 12 35 35 H 1.08998 * 109.47713 * 299.99905 * 20 19 12 36 36 H 1.08998 * 109.47293 * 59.99732 * 21 19 12 37 37 H 1.09004 * 109.46757 * 180.02562 * 21 19 12 38 38 H 1.09004 * 109.46982 * 299.99695 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0196 -0.6925 1.1994 13 6 1.1108 -0.5007 2.3201 14 6 0.9580 0.9858 2.6493 15 7 2.0485 1.3801 3.5568 16 6 3.3034 1.4559 3.1036 17 8 4.2002 1.7846 3.8509 18 6 3.6039 1.1303 1.6549 19 6 3.4184 -0.3759 1.4501 20 6 3.8858 -1.1169 2.7044 21 6 4.2598 -0.8295 0.2555 22 1 -0.3633 0.6115 0.8259 23 1 -0.3633 -1.0211 0.1166 24 1 -0.3634 0.4095 -0.9426 25 1 0.7094 1.1618 -3.4844 26 1 0.1348 -0.9136 2.0649 27 1 1.5029 -1.0226 3.1930 28 1 -0.0025 1.1559 3.1357 29 1 1.0135 1.5739 1.7332 30 1 1.8558 1.5848 4.4852 31 1 4.6316 1.4088 1.4216 32 1 2.9188 1.6762 1.0062 33 1 3.7754 -2.1909 2.5544 34 1 4.9331 -0.8829 2.8956 35 1 3.2821 -0.8051 3.5568 36 1 3.9234 -0.3123 -0.6431 37 1 5.3082 -0.5946 0.4394 38 1 4.1472 -1.9051 0.1193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708102527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = -30.617751 kcal Electronic energy + Delta-G solvation = -19282.806614 eV Core-core repulsion = 16546.257670 eV Total energy + Delta-G solvation = -2736.548943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.01077 -39.25118 -36.18318 -35.46082 -33.80875 -30.82479 -29.31381 -28.57187 -28.08398 -26.53339 -24.29177 -22.14265 -20.91994 -19.48283 -18.56216 -18.29136 -17.30449 -16.93069 -16.44509 -16.17449 -15.69536 -14.93730 -14.64226 -14.24171 -13.93239 -13.78494 -13.46584 -13.30885 -12.94311 -12.87742 -12.75996 -12.58653 -12.43783 -12.15540 -12.06391 -11.95058 -11.85047 -11.58714 -11.12800 -10.99187 -10.57852 -10.30934 -10.29355 -8.61510 -7.97105 -6.00423 1.48285 1.50225 1.55474 1.59176 2.36301 2.50827 3.24028 3.30897 3.54508 3.99719 4.07183 4.17355 4.31130 4.39288 4.41783 4.54513 4.66961 4.84742 4.94722 5.01153 5.02707 5.07202 5.11820 5.18334 5.21733 5.26294 5.40485 5.65376 5.82832 5.88380 5.90313 5.99520 6.17768 6.47746 6.66205 6.96240 7.08098 7.22980 7.62147 9.06114 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.009040 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.422817 B = 3096.542641 C = 3438.041429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.217 3.783 3 H -0.009 1.009 4 C -0.492 4.492 5 H 0.067 0.933 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.940 3.060 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.274 1.274 12 N -0.548 5.548 13 C 0.043 3.957 14 C 0.070 3.930 15 N -0.712 5.712 16 C 0.530 3.470 17 O -0.596 6.596 18 C -0.173 4.173 19 C 0.143 3.857 20 C -0.138 4.138 21 C -0.140 4.140 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.058 0.942 25 H 0.256 0.744 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.407 0.593 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -1.601 8.998 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.111 3.889 3 H 0.008 0.992 4 C -0.531 4.531 5 H 0.085 0.915 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.768 3.232 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.200 1.200 12 N -0.271 5.271 13 C -0.086 4.086 14 C -0.055 4.055 15 N -0.364 5.364 16 C 0.318 3.682 17 O -0.478 6.478 18 C -0.215 4.215 19 C 0.052 3.948 20 C -0.196 4.196 21 C -0.197 4.197 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.083 0.917 30 H 0.244 0.756 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.317 -1.853 8.951 9.146 hybrid contribution 0.122 0.722 -0.734 1.037 sum -0.194 -1.131 8.216 8.296 Atomic orbital electron populations 1.21982 0.97487 0.99015 1.01141 1.19098 0.92016 0.91280 0.86546 0.99226 1.21605 1.29232 1.11834 0.90397 0.91533 1.25500 0.96041 0.95961 1.01145 1.69976 1.38354 1.24299 1.23483 0.85884 0.78768 0.78766 0.79812 1.20232 1.21959 1.19969 1.60019 1.00430 1.61678 1.05016 1.22417 0.98371 0.93936 0.93856 1.22827 0.90604 0.97790 0.94292 1.45939 1.07020 1.68911 1.14518 1.20606 0.82568 0.74562 0.90466 1.90664 1.46545 1.50725 1.59915 1.22845 1.04235 1.01568 0.92837 1.20367 0.89234 0.89097 0.96060 1.22013 1.00615 1.01152 0.95795 1.22259 0.96987 1.01616 0.98872 0.93825 0.94667 0.92342 0.93471 0.88723 0.90179 0.86141 0.91732 0.75588 0.89170 0.89467 0.91216 0.92510 0.92781 0.90455 0.93196 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 7.61 71.98 0.55 -5.18 16 2 C 0.22 9.40 1.20 44.17 0.05 9.45 16 3 H -0.01 -0.45 4.91 -2.39 -0.01 -0.47 16 4 C -0.49 -24.17 5.92 25.60 0.15 -24.02 16 5 H 0.07 3.28 5.78 -2.91 -0.02 3.27 16 6 C 0.01 0.58 5.28 84.65 0.45 1.02 16 7 N -0.92 -49.45 11.29 21.45 0.24 -49.21 16 8 Si 0.94 41.79 29.54 68.60 2.03 43.82 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.55 -19.94 4.11 -832.34 -3.42 -23.36 16 13 C 0.04 1.24 4.79 86.56 0.41 1.66 16 14 C 0.07 1.81 5.14 86.24 0.44 2.25 16 15 N -0.71 -19.13 5.01 -462.00 -2.32 -21.44 16 16 C 0.53 18.07 5.11 88.09 0.45 18.52 16 17 O -0.60 -23.82 17.93 -3.01 -0.05 -23.87 16 18 C -0.17 -6.18 4.72 30.15 0.14 -6.04 16 19 C 0.14 5.01 0.64 3.82 0.00 5.01 16 20 C -0.14 -4.27 7.25 71.98 0.52 -3.75 16 21 C -0.14 -5.20 6.90 71.98 0.50 -4.70 16 22 H 0.04 1.49 5.29 -2.39 -0.01 1.48 16 23 H 0.03 1.42 7.62 -2.39 -0.02 1.40 16 24 H 0.06 2.83 5.92 -2.39 -0.01 2.82 16 25 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 26 H 0.09 2.64 6.25 -2.39 -0.01 2.62 16 27 H 0.08 2.13 6.08 -2.38 -0.01 2.12 16 28 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 2.05 4.75 -2.39 -0.01 2.03 16 30 H 0.41 9.03 8.92 -92.71 -0.83 8.20 16 31 H 0.09 3.22 7.88 -2.38 -0.02 3.20 16 32 H 0.09 3.41 4.67 -2.39 -0.01 3.40 16 33 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.05 1.62 4.91 -2.39 -0.01 1.61 16 36 H 0.08 3.36 5.15 -2.39 -0.01 3.34 16 37 H 0.05 1.64 8.09 -2.39 -0.02 1.62 16 38 H 0.05 2.01 7.51 -2.38 -0.02 1.99 16 Total: -1.00 -58.10 270.22 0.41 -57.69 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.26 Total: 22.14 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 3.67 Total: -5.77 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -5.49 Total: -94.01 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -58.10 0.41 -57.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708102527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.076 kcal (2) G-P(sol) polarization free energy of solvation -58.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds