Wall clock time and date at job start Mon Mar 30 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46887 * 2 1 4 4 C 1.46766 * 124.34827 * 89.99874 * 3 2 1 5 5 C 1.54480 * 105.47120 * 197.01454 * 4 3 2 6 6 C 1.54629 * 101.76523 * 334.58493 * 5 4 3 7 7 H 1.08998 * 110.48594 * 266.11983 * 6 5 4 8 8 N 1.46903 * 110.48438 * 143.47815 * 6 5 4 9 9 C 1.46901 * 111.00062 * 85.99491 * 8 6 5 10 10 H 1.09001 * 109.46995 * 325.91027 * 9 8 6 11 11 C 1.52996 * 109.46938 * 85.90676 * 9 8 6 12 12 C 1.52997 * 109.47002 * 205.90782 * 9 8 6 13 13 C 1.50699 * 109.47235 * 64.99884 * 12 9 8 14 14 H 1.08002 * 119.99911 * 359.97438 * 13 12 9 15 15 C 1.37882 * 119.99979 * 179.97438 * 13 12 9 16 16 N 1.31506 * 119.99903 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99899 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47105 * 89.99990 * 17 15 13 19 19 H 1.48498 * 109.46874 * 209.99714 * 17 15 13 20 20 H 1.48493 * 109.47327 * 330.00406 * 17 15 13 21 21 C 1.34417 * 124.35040 * 269.69967 * 3 2 1 22 22 O 1.21285 * 124.93930 * 359.57571 * 21 3 2 23 23 H 1.09007 * 109.47685 * 300.00344 * 1 2 3 24 24 H 1.09002 * 109.47482 * 59.99965 * 1 2 3 25 25 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47190 * 240.00060 * 2 1 3 27 27 H 1.08993 * 109.46905 * 119.99947 * 2 1 3 28 28 H 1.08996 * 110.24442 * 316.01952 * 4 3 2 29 29 H 1.09009 * 110.23927 * 78.01633 * 4 3 2 30 30 H 1.08996 * 110.96577 * 92.70615 * 5 4 3 31 31 H 1.09007 * 110.96458 * 216.43229 * 5 4 3 32 32 H 1.00903 * 110.99473 * 209.95188 * 8 6 5 33 33 H 1.09001 * 109.47431 * 184.40730 * 11 9 8 34 34 H 1.09003 * 109.47532 * 304.40643 * 11 9 8 35 35 H 1.09003 * 109.47407 * 64.40860 * 11 9 8 36 36 H 1.08998 * 109.46957 * 185.00460 * 12 9 8 37 37 H 1.09000 * 109.47043 * 304.99788 * 12 9 8 38 38 H 0.97003 * 120.00422 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 2.3528 3.6346 0.7487 6 6 2.7503 3.4822 -0.7378 7 1 3.8317 3.5556 -0.8529 8 7 2.0747 4.4970 -1.5574 9 6 2.8401 5.7507 -1.5796 10 1 3.3316 5.8934 -0.6172 11 6 3.8948 5.6848 -2.6860 12 6 1.8927 6.9219 -1.8471 13 6 0.9303 7.0627 -0.6960 14 1 0.9883 6.3843 0.1423 15 6 -0.0242 8.0575 -0.7132 16 7 -0.8637 8.1806 0.2915 17 14 -0.1249 9.2303 -2.1636 18 1 -1.0447 8.6732 -3.1878 19 1 -0.6366 10.5457 -1.7019 20 1 1.2264 9.4044 -2.7542 21 6 2.2766 2.0944 -1.1097 22 8 2.1462 1.6856 -2.2441 23 1 -0.3635 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8899 28 1 1.4931 2.0265 1.9383 29 1 3.2500 1.8639 1.6429 30 1 1.3780 4.1127 0.8448 31 1 3.1124 4.1874 1.3015 32 1 1.9116 4.1562 -2.4930 33 1 4.5135 6.5815 -2.6521 34 1 4.5215 4.8052 -2.5387 35 1 3.4008 5.6207 -3.6555 36 1 2.4707 7.8401 -1.9519 37 1 1.3359 6.7363 -2.7656 38 1 -1.5350 8.8807 0.2797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708985192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:35 Heat of formation + Delta-G solvation = -38.294197 kcal Electronic energy + Delta-G solvation = -17853.362078 eV Core-core repulsion = 15116.480259 eV Total energy + Delta-G solvation = -2736.881819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35193 -36.68069 -36.23085 -33.58441 -32.29579 -30.31864 -28.58700 -27.69839 -25.89825 -23.39182 -22.77513 -21.25836 -19.71693 -19.03126 -16.70690 -16.50607 -16.41880 -15.63109 -14.71370 -14.36182 -14.02501 -13.69591 -13.58429 -13.30305 -12.78643 -12.74840 -12.43798 -12.25720 -12.15660 -11.81284 -11.64900 -11.61546 -11.27794 -11.11819 -10.90114 -10.66097 -10.14107 -9.81038 -9.57738 -9.46373 -9.01829 -8.66798 -8.39681 -7.73745 -5.89050 -3.82352 2.70431 3.08501 3.39632 3.46594 3.49233 4.46654 4.57320 4.64229 4.85057 5.01798 5.09481 5.26850 5.31605 5.34053 5.47069 5.54116 5.55251 5.64616 5.70539 5.81148 5.83237 5.92687 6.10402 6.17708 6.32011 6.50910 6.56824 6.63627 6.81145 7.16972 7.20205 7.30606 7.76246 7.90642 8.04870 8.31814 8.73904 9.21163 9.74742 11.24877 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.006415 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.340199 B = 4363.742266 C = 4795.817772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.619 5.619 4 C 0.103 3.897 5 C -0.122 4.122 6 C 0.056 3.944 7 H 0.072 0.928 8 N -0.644 5.644 9 C 0.099 3.901 10 H 0.072 0.928 11 C -0.184 4.184 12 C -0.004 4.004 13 C -0.488 4.488 14 H 0.078 0.922 15 C 0.060 3.940 16 N -0.910 5.910 17 Si 0.874 3.126 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.268 1.268 21 C 0.524 3.476 22 O -0.535 6.535 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.342 0.658 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.012 0.988 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 -13.412 1.743 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.020 4.020 5 C -0.161 4.161 6 C -0.057 4.057 7 H 0.089 0.911 8 N -0.276 5.276 9 C -0.011 4.011 10 H 0.091 0.909 11 C -0.243 4.243 12 C -0.042 4.042 13 C -0.526 4.526 14 H 0.096 0.904 15 C -0.139 4.139 16 N -0.550 5.550 17 Si 0.702 3.298 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.193 1.193 21 C 0.311 3.689 22 O -0.411 6.411 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.031 0.969 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.405 -13.401 1.709 15.406 hybrid contribution 0.506 0.419 -1.245 1.408 sum 7.911 -12.982 0.463 15.210 Atomic orbital electron populations 1.22158 0.95673 1.01963 1.03044 1.21291 0.94561 0.81383 1.02615 1.48258 1.65727 1.13775 1.07613 1.22151 1.00928 0.91666 0.87271 1.22761 1.05434 0.94188 0.93670 1.22160 0.97545 0.89808 0.96198 0.91078 1.60652 1.47231 1.02158 1.17593 1.21641 0.92237 0.90320 0.96853 0.90936 1.22607 1.00128 1.00884 1.00709 1.19608 0.94882 0.91894 0.97825 1.21030 1.13186 1.14035 1.04338 0.90418 1.25001 0.95763 0.97517 0.95617 1.69901 1.19881 1.33932 1.31315 0.86876 0.78524 0.80694 0.83661 1.20603 1.21754 1.19339 1.20975 0.75931 0.87751 0.84250 1.90675 1.53769 1.75436 1.21232 0.92198 0.91965 0.91731 0.90361 0.90639 0.90378 0.91561 0.87575 0.89692 0.83823 0.92362 0.94013 0.92783 0.96363 0.96944 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.24 37.16 0.38 -1.47 16 2 C 0.12 1.35 6.66 -4.04 -0.03 1.32 16 3 N -0.62 -8.28 2.93 -172.41 -0.51 -8.78 16 4 C 0.10 1.16 7.35 -3.12 -0.02 1.14 16 5 C -0.12 -1.73 6.68 -25.10 -0.17 -1.90 16 6 C 0.06 0.90 3.00 -67.72 -0.20 0.69 16 7 H 0.07 1.04 7.26 -51.93 -0.38 0.67 16 8 N -0.64 -12.28 5.78 -99.75 -0.58 -12.86 16 9 C 0.10 1.90 2.39 -67.72 -0.16 1.74 16 10 H 0.07 1.38 7.71 -51.93 -0.40 0.98 16 11 C -0.18 -2.97 9.16 37.16 0.34 -2.63 16 12 C 0.00 -0.10 3.72 -27.89 -0.10 -0.21 16 13 C -0.49 -13.60 9.39 -34.44 -0.32 -13.92 16 14 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 15 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 16 N -0.91 -28.14 13.96 55.43 0.77 -27.36 16 17 Si 0.87 22.07 27.47 -169.99 -4.67 17.41 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 21 C 0.52 8.69 7.61 -10.86 -0.08 8.61 16 22 O -0.53 -10.50 17.09 5.55 0.09 -10.41 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.11 1.86 8.09 -51.93 -0.42 1.44 16 31 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.34 6.66 7.84 -39.29 -0.31 6.35 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.61 7.47 -51.93 -0.39 0.22 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 37 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -32.56 310.29 -7.14 -39.70 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.46 Total: 2.60 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.47 Total: -4.97 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.31 Total: -49.00 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.56 -7.14 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708985192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.410 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds