Wall clock time and date at job start Mon Mar 30 2020 03:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46887 * 2 1 4 4 C 1.46766 * 124.34827 * 89.99874 * 3 2 1 5 5 C 1.54480 * 105.47120 * 197.01454 * 4 3 2 6 6 C 1.54629 * 101.76523 * 334.58493 * 5 4 3 7 7 H 1.08998 * 110.48594 * 266.11983 * 6 5 4 8 8 N 1.46903 * 110.48438 * 143.47815 * 6 5 4 9 9 C 1.46901 * 111.00062 * 85.99491 * 8 6 5 10 10 H 1.09001 * 109.46995 * 325.91027 * 9 8 6 11 11 C 1.52996 * 109.46938 * 85.90676 * 9 8 6 12 12 C 1.52997 * 109.47002 * 205.90782 * 9 8 6 13 13 C 1.50699 * 109.47235 * 64.99884 * 12 9 8 14 14 H 1.08002 * 119.99911 * 359.97438 * 13 12 9 15 15 C 1.37882 * 119.99979 * 179.97438 * 13 12 9 16 16 N 1.31506 * 119.99903 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99899 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47105 * 89.99990 * 17 15 13 19 19 H 1.48498 * 109.46874 * 209.99714 * 17 15 13 20 20 H 1.48493 * 109.47327 * 330.00406 * 17 15 13 21 21 C 1.34417 * 124.35040 * 269.69967 * 3 2 1 22 22 O 1.21285 * 124.93930 * 359.57571 * 21 3 2 23 23 H 1.09007 * 109.47685 * 300.00344 * 1 2 3 24 24 H 1.09002 * 109.47482 * 59.99965 * 1 2 3 25 25 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47190 * 240.00060 * 2 1 3 27 27 H 1.08993 * 109.46905 * 119.99947 * 2 1 3 28 28 H 1.08996 * 110.24442 * 316.01952 * 4 3 2 29 29 H 1.09009 * 110.23927 * 78.01633 * 4 3 2 30 30 H 1.08996 * 110.96577 * 92.70615 * 5 4 3 31 31 H 1.09007 * 110.96458 * 216.43229 * 5 4 3 32 32 H 1.00903 * 110.99473 * 209.95188 * 8 6 5 33 33 H 1.09001 * 109.47431 * 184.40730 * 11 9 8 34 34 H 1.09003 * 109.47532 * 304.40643 * 11 9 8 35 35 H 1.09003 * 109.47407 * 64.40860 * 11 9 8 36 36 H 1.08998 * 109.46957 * 185.00460 * 12 9 8 37 37 H 1.09000 * 109.47043 * 304.99788 * 12 9 8 38 38 H 0.97003 * 120.00422 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 2.3528 3.6346 0.7487 6 6 2.7503 3.4822 -0.7378 7 1 3.8317 3.5556 -0.8529 8 7 2.0747 4.4970 -1.5574 9 6 2.8401 5.7507 -1.5796 10 1 3.3316 5.8934 -0.6172 11 6 3.8948 5.6848 -2.6860 12 6 1.8927 6.9219 -1.8471 13 6 0.9303 7.0627 -0.6960 14 1 0.9883 6.3843 0.1423 15 6 -0.0242 8.0575 -0.7132 16 7 -0.8637 8.1806 0.2915 17 14 -0.1249 9.2303 -2.1636 18 1 -1.0447 8.6732 -3.1878 19 1 -0.6366 10.5457 -1.7019 20 1 1.2264 9.4044 -2.7542 21 6 2.2766 2.0944 -1.1097 22 8 2.1462 1.6856 -2.2441 23 1 -0.3635 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8899 28 1 1.4931 2.0265 1.9383 29 1 3.2500 1.8639 1.6429 30 1 1.3780 4.1127 0.8448 31 1 3.1124 4.1874 1.3015 32 1 1.9116 4.1562 -2.4930 33 1 4.5135 6.5815 -2.6521 34 1 4.5215 4.8052 -2.5387 35 1 3.4008 5.6207 -3.6555 36 1 2.4707 7.8401 -1.9519 37 1 1.3359 6.7363 -2.7656 38 1 -1.5350 8.8807 0.2797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708985192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:34 Heat of formation + Delta-G solvation = -61.378608 kcal Electronic energy + Delta-G solvation = -17854.363093 eV Core-core repulsion = 15116.480259 eV Total energy + Delta-G solvation = -2737.882834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55015 -38.15766 -37.46315 -35.02986 -34.11793 -31.74046 -29.88589 -29.29112 -27.12229 -24.64282 -24.35186 -22.55332 -21.21756 -20.26665 -18.73916 -17.81829 -17.60253 -16.93235 -16.24236 -15.75284 -15.61721 -14.97013 -14.76934 -14.65357 -14.30769 -14.06527 -13.89317 -13.66250 -13.38824 -13.37125 -13.02396 -12.78044 -12.63036 -12.53515 -12.05012 -12.02380 -11.90208 -11.63236 -11.41490 -11.16808 -10.73935 -10.63759 -9.73478 -9.16843 -8.13706 -6.10785 1.39614 1.40112 1.44134 1.50747 2.05118 2.45156 3.18439 3.32720 3.36293 3.74004 4.06284 4.13191 4.15844 4.22025 4.25889 4.40284 4.48657 4.55267 4.57404 4.67940 4.83339 4.91132 4.92282 5.04477 5.14317 5.19152 5.25734 5.29806 5.32615 5.53164 5.63416 5.79641 6.05318 6.28039 6.46638 6.58349 6.96665 7.10283 7.49382 9.03043 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.006415 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.340199 B = 4363.742266 C = 4795.817772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.614 5.614 4 C 0.108 3.892 5 C -0.120 4.120 6 C 0.056 3.944 7 H 0.090 0.910 8 N -0.668 5.668 9 C 0.104 3.896 10 H 0.073 0.927 11 C -0.174 4.174 12 C -0.004 4.004 13 C -0.484 4.484 14 H 0.046 0.954 15 C -0.003 4.003 16 N -0.957 5.957 17 Si 0.939 3.061 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.247 1.247 21 C 0.514 3.486 22 O -0.575 6.575 23 H 0.060 0.940 24 H 0.026 0.974 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.336 0.664 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.025 0.975 37 H 0.007 0.993 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.808 -14.206 1.793 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.003 4.003 3 N -0.347 5.347 4 C -0.014 4.014 5 C -0.158 4.158 6 C -0.057 4.057 7 H 0.108 0.892 8 N -0.300 5.300 9 C -0.005 4.005 10 H 0.091 0.909 11 C -0.233 4.233 12 C -0.042 4.042 13 C -0.522 4.522 14 H 0.064 0.936 15 C -0.198 4.198 16 N -0.600 5.600 17 Si 0.764 3.236 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.171 1.171 21 C 0.301 3.699 22 O -0.455 6.455 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.155 0.845 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.025 0.975 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.169 -14.213 1.793 17.008 hybrid contribution -0.061 0.584 -1.158 1.299 sum 9.107 -13.629 0.634 16.404 Atomic orbital electron populations 1.22130 0.95845 1.03174 1.01283 1.21545 0.94376 0.80176 1.04183 1.48440 1.64290 1.14651 1.07355 1.22313 1.03520 0.89094 0.86486 1.22689 1.03568 0.96459 0.93116 1.22246 0.98301 0.88824 0.96311 0.89213 1.60556 1.48703 1.03095 1.17639 1.21445 0.91947 0.88947 0.98156 0.90902 1.22466 0.99313 1.02415 0.99076 1.19586 0.94834 0.94232 0.95559 1.21333 1.13616 1.12625 1.04653 0.93580 1.25875 0.95707 0.99745 0.98463 1.70057 1.21094 1.35150 1.33691 0.85832 0.79446 0.78239 0.80063 1.20563 1.21539 1.17066 1.21131 0.76047 0.88263 0.84435 1.90643 1.55803 1.76211 1.22829 0.92065 0.95482 0.89111 0.91139 0.86656 0.88862 0.87760 0.91771 0.87919 0.84488 0.91041 0.92187 0.92937 0.95712 0.97481 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.12 2.33 6.66 86.38 0.58 2.90 16 3 N -0.61 -15.40 2.93 -817.98 -2.40 -17.80 16 4 C 0.11 2.15 7.35 86.83 0.64 2.78 16 5 C -0.12 -3.31 6.68 31.65 0.21 -3.09 16 6 C 0.06 1.75 3.00 44.91 0.13 1.88 16 7 H 0.09 2.45 7.26 -2.39 -0.02 2.43 16 8 N -0.67 -25.59 5.78 -469.50 -2.71 -28.31 16 9 C 0.10 3.92 2.39 44.91 0.11 4.03 16 10 H 0.07 2.70 7.71 -2.39 -0.02 2.69 16 11 C -0.17 -5.21 9.16 71.98 0.66 -4.55 16 12 C 0.00 -0.20 3.72 29.85 0.11 -0.09 16 13 C -0.48 -27.47 9.39 25.60 0.24 -27.23 16 14 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 15 C 0.00 -0.19 5.47 84.66 0.46 0.27 16 16 N -0.96 -60.77 13.96 21.45 0.30 -60.47 16 17 Si 0.94 45.61 27.47 68.60 1.88 47.49 16 18 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 21 C 0.51 16.83 7.61 87.90 0.67 17.50 16 22 O -0.57 -22.86 17.09 -3.04 -0.05 -22.91 16 23 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.53 7.92 -2.39 -0.02 1.51 16 27 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 31 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.34 13.28 7.84 -89.69 -0.70 12.57 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.58 7.47 -2.39 -0.02 1.57 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 37 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 38 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.78 310.29 1.83 -70.95 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.27 Total: 19.33 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 4.55 Total: -8.29 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -4.81 Total: -106.57 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.49 kcal Total: -72.78 1.83 -70.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708985192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.570 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds