Wall clock time and date at job start Mon Mar 30 2020 03:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 7 7 H 1.09000 * 110.48694 * 143.47575 * 6 5 4 8 8 N 1.46891 * 110.48935 * 265.98727 * 6 5 4 9 9 C 1.46901 * 111.00119 * 204.99769 * 8 6 5 10 10 H 1.08992 * 109.47439 * 324.99982 * 9 8 6 11 11 C 1.53002 * 109.46646 * 85.00383 * 9 8 6 12 12 C 1.53004 * 109.47111 * 204.99942 * 9 8 6 13 13 C 1.50702 * 109.47110 * 65.00386 * 12 9 8 14 14 H 1.07997 * 119.99634 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00007 * 180.02562 * 13 12 9 16 16 N 1.31510 * 119.99814 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99987 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46600 * 90.00365 * 17 15 13 19 19 H 1.48493 * 109.46996 * 210.00173 * 17 15 13 20 20 H 1.48494 * 109.47196 * 330.00512 * 17 15 13 21 21 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 3 2 23 23 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 24 24 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 25 25 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 27 27 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 28 28 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 29 29 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 30 30 H 1.08995 * 110.97082 * 92.66028 * 5 4 3 31 31 H 1.08996 * 110.96783 * 216.38630 * 5 4 3 32 32 H 1.00900 * 110.99842 * 328.95687 * 8 6 5 33 33 H 1.08999 * 109.46396 * 180.02562 * 11 9 8 34 34 H 1.08997 * 109.46879 * 299.99738 * 11 9 8 35 35 H 1.08997 * 109.47400 * 60.00370 * 11 9 8 36 36 H 1.09001 * 109.46981 * 184.99988 * 12 9 8 37 37 H 1.09003 * 109.47141 * 305.00527 * 12 9 8 38 38 H 0.97007 * 119.99923 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 6 2.7499 3.4854 -0.7357 7 1 2.2481 4.2389 -1.3428 8 7 4.2070 3.5890 -0.8907 9 6 4.5618 4.0379 -2.2437 10 1 3.8539 3.6236 -2.9614 11 6 4.5129 5.5660 -2.3031 12 6 5.9742 3.5592 -2.5859 13 6 5.9931 2.0536 -2.6478 14 1 5.0883 1.4942 -2.4613 15 6 7.1656 1.3904 -2.9414 16 7 7.1819 0.0765 -2.9959 17 14 8.7307 2.3581 -3.2633 18 1 9.4577 2.5628 -1.9847 19 1 9.5933 1.6042 -4.2081 20 1 8.3851 3.6765 -3.8528 21 6 2.2720 2.0997 -1.1098 22 8 2.1363 1.6946 -2.2449 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.2503 1.8640 1.6428 29 1 1.4942 2.0251 1.9391 30 1 1.3766 4.1124 0.8475 31 1 3.1107 4.1879 1.3048 32 1 4.6025 4.1996 -0.1917 33 1 4.7758 5.8991 -3.3071 34 1 3.5068 5.9070 -2.0593 35 1 5.2209 5.9804 -1.5854 36 1 6.2716 3.9663 -3.5523 37 1 6.6692 3.9001 -1.8185 38 1 8.0068 -0.3902 -3.2029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708985193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:37 Heat of formation + Delta-G solvation = -34.620193 kcal Electronic energy + Delta-G solvation = -18078.562851 eV Core-core repulsion = 15341.840349 eV Total energy + Delta-G solvation = -2736.722502 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.12446 -36.59629 -35.92716 -33.59328 -32.18237 -30.19535 -28.44854 -27.66789 -25.94905 -23.35820 -22.57741 -21.42124 -19.67847 -18.87963 -16.54477 -16.44705 -16.12610 -15.19367 -14.66895 -14.38737 -14.00709 -13.79067 -13.46550 -13.13198 -12.72449 -12.70121 -12.37893 -12.22594 -12.06507 -11.86260 -11.66669 -11.60307 -11.26938 -10.94923 -10.88248 -10.67544 -10.06821 -9.77856 -9.56914 -9.26914 -8.93036 -8.35535 -8.32316 -7.70686 -5.79362 -3.72667 3.08145 3.35118 3.41828 3.48938 3.51771 4.53920 4.62982 4.64548 4.74358 4.99372 5.16883 5.30030 5.42099 5.48209 5.54046 5.56240 5.65084 5.69332 5.78201 5.80689 5.83918 5.90752 5.99918 6.06083 6.24373 6.40987 6.51931 6.85773 6.92280 7.21820 7.31088 7.50609 7.75313 7.94451 8.07368 8.72026 8.84936 9.36997 9.83135 11.35044 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024054 B = 0.007634 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.772021 B = 3667.049049 C = 4353.078061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.113 3.887 5 C -0.136 4.136 6 C 0.056 3.944 7 H 0.071 0.929 8 N -0.643 5.643 9 C 0.094 3.906 10 H 0.079 0.921 11 C -0.181 4.181 12 C -0.002 4.002 13 C -0.484 4.484 14 H 0.079 0.921 15 C 0.059 3.941 16 N -0.909 5.909 17 Si 0.874 3.126 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.269 1.269 21 C 0.537 3.463 22 O -0.517 6.517 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.338 0.662 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.051 0.949 36 H 0.017 0.983 37 H 0.010 0.990 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 7.378 10.679 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.356 5.356 4 C -0.011 4.011 5 C -0.174 4.174 6 C -0.058 4.058 7 H 0.089 0.911 8 N -0.276 5.276 9 C -0.015 4.015 10 H 0.097 0.903 11 C -0.241 4.241 12 C -0.039 4.039 13 C -0.523 4.523 14 H 0.097 0.903 15 C -0.140 4.140 16 N -0.550 5.550 17 Si 0.702 3.298 18 H -0.207 1.207 19 H -0.218 1.218 20 H -0.194 1.194 21 C 0.323 3.677 22 O -0.390 6.390 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.158 0.842 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.029 0.971 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.660 6.259 9.870 16.510 hybrid contribution 0.764 1.284 -0.001 1.494 sum -10.896 7.543 9.870 16.524 Atomic orbital electron populations 1.22156 0.96403 1.01917 1.01979 1.21253 0.93518 0.81742 1.03362 1.48179 1.66769 1.13480 1.07150 1.21901 1.01212 0.90486 0.87484 1.22808 1.02591 0.96535 0.95445 1.22165 0.92286 0.95250 0.96055 0.91142 1.60259 1.05171 1.56670 1.05527 1.21712 1.00713 0.90113 0.88965 0.90255 1.22585 1.00083 0.99211 1.02175 1.19587 0.90855 0.98109 0.95392 1.21089 0.97192 0.89255 1.44751 0.90334 1.25023 0.98484 0.94662 0.95837 1.69934 1.27021 1.06905 1.51170 0.86880 0.84250 0.80533 0.78096 1.20704 1.21770 1.19389 1.20769 0.75336 0.87430 0.84198 1.90709 1.52052 1.75119 1.21162 0.92867 0.92409 0.91725 0.89825 0.90712 0.90863 0.91296 0.90136 0.89104 0.84220 0.92266 0.94009 0.92989 0.96482 0.97127 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.12 1.74 6.66 -4.04 -0.03 1.71 16 3 N -0.62 -9.73 2.94 -172.35 -0.51 -10.24 16 4 C 0.11 1.31 7.34 -3.12 -0.02 1.29 16 5 C -0.14 -1.45 6.84 -25.10 -0.17 -1.63 16 6 C 0.06 0.89 3.01 -67.73 -0.20 0.68 16 7 H 0.07 1.07 7.20 -51.93 -0.37 0.70 16 8 N -0.64 -11.75 5.82 -99.75 -0.58 -12.33 16 9 C 0.09 1.91 2.39 -67.71 -0.16 1.75 16 10 H 0.08 1.83 7.67 -51.93 -0.40 1.43 16 11 C -0.18 -2.86 9.15 37.16 0.34 -2.52 16 12 C 0.00 -0.04 3.72 -27.88 -0.10 -0.15 16 13 C -0.48 -14.55 9.39 -34.44 -0.32 -14.88 16 14 H 0.08 2.66 7.99 -52.49 -0.42 2.24 16 15 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 16 N -0.91 -29.65 13.96 55.43 0.77 -28.88 16 17 Si 0.87 22.68 27.47 -169.99 -4.67 18.01 16 18 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 21 C 0.54 10.42 7.64 -10.77 -0.08 10.34 16 22 O -0.52 -12.53 17.44 5.55 0.10 -12.43 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.41 7.93 -51.93 -0.41 1.00 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.82 7.56 -51.93 -0.39 0.42 16 32 H 0.34 5.21 7.79 -39.29 -0.31 4.90 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.57 7.50 -51.93 -0.39 0.18 16 35 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 37 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 38 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -36.30 310.21 -7.11 -43.41 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.43 Total: 0.99 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.47 Total: -3.21 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.31 Total: -51.45 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.10 Total: -12.43 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.67 Total: 18.01 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.30 -7.11 -43.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708985193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.794 kcal (2) G-P(sol) polarization free energy of solvation -36.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds