Wall clock time and date at job start Mon Mar 30 2020 03:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 7 7 H 1.09000 * 110.48694 * 143.47575 * 6 5 4 8 8 N 1.46891 * 110.48935 * 265.98727 * 6 5 4 9 9 C 1.46901 * 111.00119 * 204.99769 * 8 6 5 10 10 H 1.08992 * 109.47439 * 324.99982 * 9 8 6 11 11 C 1.53002 * 109.46646 * 85.00383 * 9 8 6 12 12 C 1.53004 * 109.47111 * 204.99942 * 9 8 6 13 13 C 1.50702 * 109.47110 * 65.00386 * 12 9 8 14 14 H 1.07997 * 119.99634 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00007 * 180.02562 * 13 12 9 16 16 N 1.31510 * 119.99814 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99987 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46600 * 90.00365 * 17 15 13 19 19 H 1.48493 * 109.46996 * 210.00173 * 17 15 13 20 20 H 1.48494 * 109.47196 * 330.00512 * 17 15 13 21 21 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 3 2 23 23 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 24 24 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 25 25 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 27 27 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 28 28 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 29 29 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 30 30 H 1.08995 * 110.97082 * 92.66028 * 5 4 3 31 31 H 1.08996 * 110.96783 * 216.38630 * 5 4 3 32 32 H 1.00900 * 110.99842 * 328.95687 * 8 6 5 33 33 H 1.08999 * 109.46396 * 180.02562 * 11 9 8 34 34 H 1.08997 * 109.46879 * 299.99738 * 11 9 8 35 35 H 1.08997 * 109.47400 * 60.00370 * 11 9 8 36 36 H 1.09001 * 109.46981 * 184.99988 * 12 9 8 37 37 H 1.09003 * 109.47141 * 305.00527 * 12 9 8 38 38 H 0.97007 * 119.99923 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 6 2.7499 3.4854 -0.7357 7 1 2.2481 4.2389 -1.3428 8 7 4.2070 3.5890 -0.8907 9 6 4.5618 4.0379 -2.2437 10 1 3.8539 3.6236 -2.9614 11 6 4.5129 5.5660 -2.3031 12 6 5.9742 3.5592 -2.5859 13 6 5.9931 2.0536 -2.6478 14 1 5.0883 1.4942 -2.4613 15 6 7.1656 1.3904 -2.9414 16 7 7.1819 0.0765 -2.9959 17 14 8.7307 2.3581 -3.2633 18 1 9.4577 2.5628 -1.9847 19 1 9.5933 1.6042 -4.2081 20 1 8.3851 3.6765 -3.8528 21 6 2.2720 2.0997 -1.1098 22 8 2.1363 1.6946 -2.2449 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.2503 1.8640 1.6428 29 1 1.4942 2.0251 1.9391 30 1 1.3766 4.1124 0.8475 31 1 3.1107 4.1879 1.3048 32 1 4.6025 4.1996 -0.1917 33 1 4.7758 5.8991 -3.3071 34 1 3.5068 5.9070 -2.0593 35 1 5.2209 5.9804 -1.5854 36 1 6.2716 3.9663 -3.5523 37 1 6.6692 3.9001 -1.8185 38 1 8.0068 -0.3902 -3.2029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708985193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:37 Heat of formation + Delta-G solvation = -62.777019 kcal Electronic energy + Delta-G solvation = -18079.783822 eV Core-core repulsion = 15341.840349 eV Total energy + Delta-G solvation = -2737.943474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43276 -38.13133 -37.37255 -35.12122 -34.13661 -31.66188 -29.81907 -29.24539 -27.22583 -24.75144 -24.25611 -22.58010 -21.37585 -20.20752 -18.78610 -17.79442 -17.45525 -16.55150 -16.37176 -15.71730 -15.63887 -15.19009 -14.74529 -14.61418 -14.28097 -14.05717 -13.99784 -13.66693 -13.37839 -13.30346 -13.07968 -12.76801 -12.53839 -12.36609 -12.17737 -12.03180 -11.79349 -11.68634 -11.45009 -11.17235 -10.82235 -10.67710 -9.62321 -9.10543 -8.16635 -6.16616 1.35579 1.39763 1.50871 1.62486 2.17613 2.42526 3.15625 3.40981 3.46608 3.64256 4.01042 4.11518 4.21672 4.24423 4.32872 4.43683 4.49241 4.55411 4.61458 4.69903 4.84112 4.94188 4.96458 5.00879 5.12575 5.14848 5.18905 5.24431 5.29511 5.52053 5.74220 5.77143 6.18371 6.22815 6.49306 6.75797 6.92944 7.30520 7.43280 9.02110 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024054 B = 0.007634 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.772021 B = 3667.049049 C = 4353.078061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.113 3.887 3 N -0.619 5.619 4 C 0.104 3.896 5 C -0.116 4.116 6 C 0.058 3.942 7 H 0.076 0.924 8 N -0.665 5.665 9 C 0.100 3.900 10 H 0.036 0.964 11 C -0.167 4.167 12 C 0.000 4.000 13 C -0.489 4.489 14 H 0.017 0.983 15 C -0.012 4.012 16 N -0.965 5.965 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.291 1.291 20 H -0.246 1.246 21 C 0.511 3.489 22 O -0.590 6.590 23 H 0.080 0.920 24 H 0.032 0.968 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.357 0.643 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.018 0.982 37 H 0.026 0.974 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.499 10.502 13.298 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 N -0.353 5.353 4 C -0.018 4.018 5 C -0.154 4.154 6 C -0.056 4.056 7 H 0.094 0.906 8 N -0.300 5.300 9 C -0.010 4.010 10 H 0.055 0.945 11 C -0.226 4.226 12 C -0.037 4.037 13 C -0.527 4.527 14 H 0.036 0.964 15 C -0.206 4.206 16 N -0.608 5.608 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.217 1.217 20 H -0.169 1.169 21 C 0.298 3.702 22 O -0.469 6.469 23 H 0.099 0.901 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.179 0.821 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.415 9.414 12.567 19.413 hybrid contribution 0.595 0.157 -0.773 0.988 sum -10.819 9.571 11.794 18.648 Atomic orbital electron populations 1.22036 0.93745 1.03239 1.02012 1.21417 0.95731 0.81288 1.02436 1.48467 1.65071 1.13915 1.07836 1.22275 1.02596 0.90560 0.86366 1.22885 1.05090 0.96280 0.91139 1.22175 0.90557 0.92865 0.99977 0.90617 1.59944 1.07376 1.57746 1.04973 1.21390 0.96845 0.93393 0.89366 0.94529 1.22402 1.02360 0.94773 1.03024 1.19547 0.94269 0.94063 0.95854 1.21298 0.95009 0.92233 1.44194 0.96445 1.26117 1.03131 0.95772 0.95579 1.70144 1.28345 1.09376 1.52904 0.85564 0.78351 0.79393 0.78615 1.18945 1.21733 1.16908 1.21714 0.74894 0.89552 0.84018 1.90649 1.55171 1.76943 1.24100 0.90070 0.94890 0.89847 0.94419 0.87947 0.91335 0.87076 0.86863 0.86335 0.82064 0.92203 0.91537 0.90763 0.96422 0.95532 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.24 71.98 0.74 -2.64 16 2 C 0.11 3.30 6.66 86.38 0.58 3.87 16 3 N -0.62 -19.63 2.94 -817.66 -2.40 -22.03 16 4 C 0.10 2.12 7.34 86.83 0.64 2.76 16 5 C -0.12 -2.04 6.84 31.65 0.22 -1.83 16 6 C 0.06 1.78 3.01 44.91 0.14 1.91 16 7 H 0.08 2.23 7.20 -2.39 -0.02 2.21 16 8 N -0.66 -23.90 5.82 -469.51 -2.73 -26.63 16 9 C 0.10 4.06 2.39 44.92 0.11 4.17 16 10 H 0.04 1.78 7.67 -2.39 -0.02 1.76 16 11 C -0.17 -4.76 9.15 71.98 0.66 -4.11 16 12 C 0.00 0.02 3.72 29.85 0.11 0.13 16 13 C -0.49 -30.68 9.39 25.60 0.24 -30.44 16 14 H 0.02 1.27 7.99 -2.91 -0.02 1.24 16 15 C -0.01 -0.77 5.47 84.65 0.46 -0.31 16 16 N -0.96 -65.78 13.96 21.45 0.30 -65.48 16 17 Si 0.96 47.06 27.47 68.60 1.88 48.94 16 18 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 21 C 0.51 20.89 7.64 87.87 0.67 21.56 16 22 O -0.59 -31.49 17.44 -3.05 -0.05 -31.54 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.42 7.93 -2.39 -0.02 1.40 16 27 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.12 1.50 7.56 -2.39 -0.02 1.48 16 32 H 0.36 10.03 7.79 -89.69 -0.70 9.33 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.59 7.50 -2.39 -0.02 1.57 16 35 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 36 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 37 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 38 H 0.26 16.49 8.31 -92.70 -0.77 15.72 16 Total: -1.00 -88.47 310.21 1.82 -86.65 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.27 Total: 15.02 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.55 Total: -4.93 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.84 Total: -114.14 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.05 Total: -31.54 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.88 Total: 48.94 kcal Total: -88.47 1.82 -86.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708985193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.874 kcal (2) G-P(sol) polarization free energy of solvation -88.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds