Wall clock time and date at job start Mon Mar 30 2020 03:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47248 * 2 1 4 4 C 1.46772 * 124.34879 * 269.94990 * 3 2 1 5 5 C 1.54831 * 105.49527 * 197.05429 * 4 3 2 6 6 C 1.54627 * 101.60602 * 334.56725 * 5 4 3 7 7 H 1.08991 * 110.48816 * 143.56865 * 6 5 4 8 8 N 1.46906 * 110.48557 * 266.08221 * 6 5 4 9 9 C 1.46899 * 110.99904 * 203.15934 * 8 6 5 10 10 C 1.52996 * 109.46973 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47328 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47457 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00087 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99956 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46845 * 60.00735 * 16 14 12 18 18 H 1.48503 * 109.47399 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47295 * 300.00832 * 16 14 12 20 20 C 1.34421 * 124.35563 * 89.96656 * 3 2 1 21 21 O 1.21277 * 124.94182 * 359.61262 * 20 3 2 22 22 H 1.08995 * 109.47699 * 300.00424 * 1 2 3 23 23 H 1.09000 * 109.46971 * 60.00999 * 1 2 3 24 24 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47699 * 239.99576 * 2 1 3 26 26 H 1.09005 * 109.47295 * 119.99343 * 2 1 3 27 27 H 1.09003 * 110.23884 * 316.03482 * 4 3 2 28 28 H 1.09004 * 110.24583 * 78.03064 * 4 3 2 29 29 H 1.08996 * 111.07757 * 216.48433 * 5 4 3 30 30 H 1.09003 * 111.01227 * 92.61305 * 5 4 3 31 31 H 1.00901 * 110.99468 * 327.11068 * 8 6 5 32 32 H 1.09001 * 109.47354 * 59.99669 * 9 8 6 33 33 H 1.09000 * 109.47162 * 299.99651 * 9 8 6 34 34 H 1.09001 * 109.47372 * 59.99654 * 10 9 8 35 35 H 1.09000 * 109.46870 * 299.99804 * 10 9 8 36 36 H 1.09001 * 109.47194 * 59.99524 * 11 10 9 37 37 H 1.09004 * 109.46724 * 300.00183 * 11 10 9 38 38 H 0.97000 * 119.99806 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2954 2.1616 -1.2118 5 6 3.1779 3.3462 -0.7481 6 6 2.7696 3.4754 0.7377 7 1 3.6309 3.7469 1.3478 8 7 1.6983 4.4688 0.8919 9 6 1.6715 5.0062 2.2588 10 6 0.5451 6.0344 2.3805 11 6 0.5176 6.5947 3.8040 12 6 -0.5914 7.6079 3.9237 13 1 -1.2147 7.8299 3.0700 14 6 -0.8112 8.2509 5.1234 15 7 -0.0527 7.9804 6.1631 16 14 -2.1864 9.5064 5.2720 17 1 -3.4863 8.8546 4.9710 18 1 -2.2130 10.0503 6.6536 19 1 -1.9528 10.6127 4.3093 20 6 2.2706 2.0966 1.1097 21 8 2.1207 1.6948 2.2442 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.8337 1.5523 -1.9378 28 1 1.3651 2.5305 -1.6438 29 1 2.9360 4.2547 -1.2996 30 1 4.2368 3.1049 -0.8420 31 1 1.7921 5.2099 0.2137 32 1 2.6258 5.4841 2.4801 33 1 1.4994 4.1941 2.9652 34 1 -0.4090 5.5561 2.1593 35 1 0.7168 6.8466 1.6741 36 1 1.4718 7.0731 4.0247 37 1 0.3462 5.7827 4.5107 38 1 0.6616 7.3287 6.0858 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708989736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:55 Heat of formation + Delta-G solvation = -77.581665 kcal Electronic energy + Delta-G solvation = -17191.757946 eV Core-core repulsion = 14453.172494 eV Total energy + Delta-G solvation = -2738.585452 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55395 -37.92410 -37.41858 -35.95020 -34.26942 -32.36494 -30.00186 -28.34980 -26.78557 -24.68881 -24.20085 -22.82138 -22.01656 -20.29586 -18.93955 -17.74457 -17.57110 -16.91204 -16.52967 -15.69365 -15.67434 -15.39339 -15.07571 -14.89508 -14.63789 -14.37008 -13.81390 -13.71245 -13.61034 -13.33586 -12.83114 -12.71462 -12.51990 -12.36257 -12.19278 -12.02821 -11.93929 -11.71570 -11.67357 -11.01541 -10.68901 -10.56492 -9.75802 -9.55586 -8.71848 -6.42339 1.43028 1.51661 1.61367 1.80710 2.05541 2.56601 3.12658 3.13935 3.31406 3.51537 3.93420 4.04479 4.08782 4.19572 4.23205 4.29615 4.46092 4.46760 4.52713 4.67767 4.73677 4.79489 4.86405 4.90731 4.94435 5.00259 5.08532 5.24039 5.36351 5.47701 5.63846 5.76123 5.98040 6.06534 6.15459 6.38556 6.53846 7.13640 7.41213 8.68724 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037098 B = 0.004160 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.569844 B = 6729.142169 C = 6908.699537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.613 5.613 4 C 0.104 3.896 5 C -0.119 4.119 6 C 0.046 3.954 7 H 0.071 0.929 8 N -0.668 5.668 9 C 0.073 3.927 10 C -0.082 4.082 11 C 0.007 3.993 12 C -0.619 4.619 13 H 0.054 0.946 14 C -0.043 4.043 15 N -0.939 5.939 16 Si 1.122 2.878 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.514 3.486 21 O -0.588 6.588 22 H 0.020 0.980 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.363 0.637 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.064 0.936 36 H -0.009 1.009 37 H -0.022 1.022 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -13.033 -21.900 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.004 4.004 3 N -0.346 5.346 4 C -0.017 4.017 5 C -0.157 4.157 6 C -0.067 4.067 7 H 0.089 0.911 8 N -0.305 5.305 9 C -0.056 4.056 10 C -0.120 4.120 11 C -0.030 4.030 12 C -0.657 4.657 13 H 0.073 0.927 14 C -0.240 4.240 15 N -0.576 5.576 16 Si 0.942 3.058 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.188 1.188 20 C 0.301 3.699 21 O -0.468 6.468 22 H 0.040 0.960 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.137 0.863 26 H 0.079 0.921 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.185 0.815 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.009 0.991 37 H -0.004 1.004 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.378 -12.782 -20.200 24.502 hybrid contribution 1.517 -0.716 -0.178 1.687 sum 6.895 -13.497 -20.378 25.397 Atomic orbital electron populations 1.22109 0.95840 1.03030 1.01269 1.21520 0.94445 0.80603 1.03870 1.48466 1.64359 1.14231 1.07520 1.22390 1.00441 0.92651 0.86241 1.22960 1.01583 1.00549 0.90618 1.22310 0.93359 0.90371 1.00669 0.91126 1.60116 1.46872 1.18328 1.05136 1.21862 0.97452 0.96254 0.90037 1.21224 0.97350 0.96638 0.96785 1.19158 0.95563 0.94435 0.93881 1.22496 1.18031 1.25462 0.99704 0.92723 1.27605 1.02915 1.01436 0.92004 1.70917 1.19858 1.34189 1.32632 0.82895 0.72555 0.73820 0.76522 1.19469 1.20850 1.18834 1.21357 0.76094 0.88240 0.84225 1.90668 1.55616 1.76586 1.23883 0.96034 0.91303 0.89524 0.86336 0.92139 0.86904 0.90186 0.86369 0.87188 0.81459 0.94909 0.94079 0.93385 0.91708 0.99090 1.00376 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 10.24 71.98 0.74 -2.33 16 2 C 0.12 2.08 6.65 86.38 0.57 2.65 16 3 N -0.61 -13.01 2.93 -817.27 -2.40 -15.40 16 4 C 0.10 1.23 7.36 86.95 0.64 1.87 16 5 C -0.12 -1.41 6.87 31.77 0.22 -1.19 16 6 C 0.05 1.13 3.24 44.91 0.15 1.27 16 7 H 0.07 1.82 7.85 -2.39 -0.02 1.81 16 8 N -0.67 -19.11 6.34 -491.61 -3.12 -22.23 16 9 C 0.07 2.79 5.53 86.30 0.48 3.27 16 10 C -0.08 -3.62 5.41 30.59 0.17 -3.45 16 11 C 0.01 0.41 4.28 29.85 0.13 0.53 16 12 C -0.62 -37.29 9.11 25.60 0.23 -37.05 16 13 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 14 C -0.04 -2.61 5.46 84.65 0.46 -2.14 16 15 N -0.94 -61.26 13.65 21.45 0.29 -60.96 16 16 Si 1.12 51.88 29.90 68.60 2.05 53.93 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 C 0.51 15.90 7.62 87.90 0.67 16.57 16 21 O -0.59 -24.83 17.40 -3.02 -0.05 -24.88 16 22 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.32 7.93 -2.38 -0.02 1.30 16 27 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.12 0.91 7.58 -2.39 -0.02 0.89 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.36 8.12 8.09 -89.69 -0.73 7.39 16 32 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.04 1.85 7.95 -2.39 -0.02 1.83 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 36 H -0.01 -0.54 8.01 -2.39 -0.02 -0.56 16 37 H -0.02 -1.36 8.01 -2.39 -0.02 -1.38 16 38 H 0.25 16.85 7.22 -92.71 -0.67 16.18 16 Total: -1.00 -81.99 315.06 1.62 -80.37 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.40 Total: 9.19 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.45 Total: -20.01 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -5.22 Total: -98.60 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.05 Total: 53.93 kcal Total: -81.99 1.62 -80.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708989736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.784 kcal (2) G-P(sol) polarization free energy of solvation -81.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds