Wall clock time and date at job start Mon Mar 30 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47285 * 89.99870 * 8 6 4 10 10 H 1.48503 * 109.47250 * 209.99665 * 8 6 4 11 11 H 1.48499 * 109.47267 * 329.99827 * 8 6 4 12 12 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 13 13 C 1.46909 * 111.00020 * 183.95360 * 12 2 1 14 14 C 1.46899 * 111.00239 * 60.00318 * 12 2 1 15 15 C 1.53000 * 109.47475 * 190.00057 * 14 12 2 16 16 H 1.09000 * 110.43260 * 307.53572 * 15 14 12 17 17 C 1.54625 * 110.48700 * 184.99591 * 15 14 12 18 18 C 1.54480 * 101.76551 * 216.51955 * 17 15 14 19 19 N 1.46758 * 105.47238 * 25.41755 * 18 17 15 20 20 C 1.46498 * 124.35158 * 162.98141 * 19 18 17 21 21 C 1.34426 * 111.30250 * 342.98101 * 19 18 17 22 22 O 1.21277 * 124.94014 * 180.44098 * 21 19 18 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 27 27 H 1.08992 * 109.46818 * 59.99948 * 13 12 2 28 28 H 1.08995 * 109.47231 * 179.97438 * 13 12 2 29 29 H 1.09001 * 109.46905 * 300.00154 * 13 12 2 30 30 H 1.09005 * 109.46652 * 309.99590 * 14 12 2 31 31 H 1.09001 * 109.47189 * 69.99202 * 14 12 2 32 32 H 1.09001 * 110.97078 * 334.63992 * 17 15 14 33 33 H 1.09009 * 110.96681 * 98.36751 * 17 15 14 34 34 H 1.08994 * 110.24625 * 144.42073 * 18 17 15 35 35 H 1.09003 * 110.24891 * 266.32877 * 18 17 15 36 36 H 1.09008 * 109.47006 * 90.00037 * 20 19 18 37 37 H 1.08999 * 109.47589 * 209.99776 * 20 19 18 38 38 H 1.08994 * 109.47395 * 330.00431 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8625 -0.9043 -3.6342 16 1 2.9162 -1.1832 -3.6395 17 6 1.4901 -0.1711 -4.9436 18 6 0.9618 -1.3320 -5.8153 19 7 0.4906 -2.3495 -4.8684 20 6 -0.4041 -3.4548 -5.2202 21 6 0.9856 -2.1370 -3.6368 22 8 0.7621 -2.8326 -2.6688 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.7095 1.1617 3.4844 27 1 3.8029 -1.3531 -0.3068 28 1 3.8208 -1.3117 -2.0859 29 1 3.9186 0.2051 -1.1592 30 1 0.4721 0.1324 -2.3563 31 1 2.0518 0.9346 -2.5280 32 1 0.7109 0.5704 -4.7675 33 1 2.3685 0.2889 -5.3965 34 1 0.1381 -0.9890 -6.4412 35 1 1.7636 -1.7338 -6.4348 36 1 0.1872 -4.3155 -5.5331 37 1 -1.0072 -3.7242 -4.3532 38 1 -1.0580 -3.1474 -6.0362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709561539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:06 Heat of formation + Delta-G solvation = -17.681925 kcal Electronic energy + Delta-G solvation = -18134.517272 eV Core-core repulsion = 15398.529268 eV Total energy + Delta-G solvation = -2735.988004 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.19955 -36.86371 -35.96081 -33.41423 -32.11402 -29.24321 -28.26150 -26.75801 -25.62282 -24.25805 -22.71809 -21.19308 -19.51850 -18.67046 -16.73830 -16.31459 -15.97482 -15.22311 -14.78366 -14.08893 -14.02743 -13.69352 -13.35800 -13.16901 -12.69480 -12.44034 -12.27132 -12.11711 -12.02171 -11.67001 -11.29223 -11.08627 -10.98405 -10.82279 -10.53852 -10.25010 -9.98948 -9.91415 -9.66359 -9.16692 -8.73686 -8.52476 -8.31998 -6.95341 -5.91049 -3.93962 3.06381 3.21360 3.37414 3.43590 3.49757 4.45839 4.55119 4.58025 4.79216 5.07024 5.27776 5.33354 5.39766 5.40793 5.48324 5.60152 5.73085 5.77814 5.83218 5.95777 6.16446 6.28896 6.42120 6.51075 6.71737 6.88321 6.96037 7.19840 7.28573 7.34267 7.63483 7.86046 7.94780 8.35463 8.44908 8.66217 8.74216 9.12822 9.70202 11.16087 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038963 B = 0.006009 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.450651 B = 4658.922193 C = 4803.461787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.214 3.786 3 H -0.005 1.005 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.524 5.524 13 C 0.039 3.961 14 C 0.070 3.930 15 C -0.119 4.119 16 H 0.105 0.895 17 C -0.130 4.130 18 C 0.108 3.892 19 N -0.640 5.640 20 C 0.100 3.900 21 C 0.520 3.480 22 O -0.486 6.486 23 H 0.083 0.917 24 H 0.004 0.996 25 H 0.036 0.964 26 H 0.259 0.741 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.009 0.991 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 -1.870 -17.805 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.109 3.891 3 H 0.013 0.987 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.248 5.248 13 C -0.110 4.110 14 C -0.059 4.059 15 C -0.141 4.141 16 H 0.123 0.877 17 C -0.169 4.169 18 C -0.015 4.015 19 N -0.379 5.379 20 C -0.042 4.042 21 C 0.306 3.694 22 O -0.357 6.357 23 H 0.102 0.898 24 H 0.023 0.977 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.205 -2.694 -17.098 17.310 hybrid contribution 0.596 0.414 0.667 0.986 sum 0.391 -2.280 -16.431 16.593 Atomic orbital electron populations 1.21822 0.97821 0.99812 0.99384 1.19215 0.92308 0.91619 0.86001 0.98718 1.21179 1.30559 1.12017 0.89735 0.91851 1.24928 0.95334 0.95157 0.98971 1.69903 1.37270 1.23247 1.23204 0.86528 0.78317 0.80194 0.82564 1.20895 1.21340 1.19838 1.62074 1.08766 1.52357 1.01620 1.22215 0.89134 0.98666 1.00943 1.21922 1.01147 0.93311 0.89564 1.22077 1.00925 0.95159 0.95951 0.87738 1.22660 1.02165 0.97103 0.94930 1.21960 0.99028 0.88454 0.92083 1.48270 1.49842 1.29071 1.10683 1.21424 0.93003 0.88476 1.01290 1.20772 0.80400 0.86336 0.81844 1.90792 1.58957 1.50332 1.35600 0.89834 0.97695 0.94458 0.93153 0.90670 0.94194 0.97292 0.90665 0.95360 0.89944 0.89512 0.90973 0.91711 0.93242 0.90825 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.76 37.16 0.33 -3.10 16 2 C 0.21 5.73 2.06 -68.87 -0.14 5.59 16 3 H 0.00 -0.14 8.14 -51.93 -0.42 -0.56 16 4 C -0.50 -14.33 7.93 -34.44 -0.27 -14.60 16 5 H 0.06 1.85 6.39 -52.49 -0.34 1.51 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -26.47 11.32 55.43 0.63 -25.84 16 8 Si 0.90 22.25 29.54 -169.99 -5.02 17.22 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.52 -12.10 3.97 -236.28 -0.94 -13.03 16 13 C 0.04 0.81 9.06 60.07 0.54 1.36 16 14 C 0.07 1.31 4.06 -3.82 -0.02 1.30 16 15 C -0.12 -1.81 2.90 -90.63 -0.26 -2.07 16 16 H 0.10 1.54 6.24 -51.93 -0.32 1.22 16 17 C -0.13 -1.34 6.70 -25.10 -0.17 -1.51 16 18 C 0.11 1.02 7.35 -3.13 -0.02 0.99 16 19 N -0.64 -8.49 3.33 -180.30 -0.60 -9.09 16 20 C 0.10 1.09 10.96 59.85 0.66 1.75 16 21 C 0.52 9.13 7.43 -10.86 -0.08 9.05 16 22 O -0.49 -11.02 16.87 5.56 0.09 -10.93 16 23 H 0.08 2.36 6.07 -51.93 -0.32 2.04 16 24 H 0.00 0.10 6.20 -51.93 -0.32 -0.22 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.07 1.69 6.23 -51.93 -0.32 1.36 16 28 H 0.04 0.71 6.19 -51.93 -0.32 0.39 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 1.50 5.81 -51.93 -0.30 1.19 16 31 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 33 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 299.41 15.07 4.51 4.51 Total: -1.00 -33.70 299.41 -6.87 -40.56 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.00 Total: -3.69 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 0.47 Total: 0.29 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.91 Total: -47.97 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.70 -6.87 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709561539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.882 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds