Wall clock time and date at job start Mon Mar 30 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47285 * 89.99870 * 8 6 4 10 10 H 1.48503 * 109.47250 * 209.99665 * 8 6 4 11 11 H 1.48499 * 109.47267 * 329.99827 * 8 6 4 12 12 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 13 13 C 1.46909 * 111.00020 * 183.95360 * 12 2 1 14 14 C 1.46899 * 111.00239 * 60.00318 * 12 2 1 15 15 C 1.53000 * 109.47475 * 190.00057 * 14 12 2 16 16 H 1.09000 * 110.43260 * 307.53572 * 15 14 12 17 17 C 1.54625 * 110.48700 * 184.99591 * 15 14 12 18 18 C 1.54480 * 101.76551 * 216.51955 * 17 15 14 19 19 N 1.46758 * 105.47238 * 25.41755 * 18 17 15 20 20 C 1.46498 * 124.35158 * 162.98141 * 19 18 17 21 21 C 1.34426 * 111.30250 * 342.98101 * 19 18 17 22 22 O 1.21277 * 124.94014 * 180.44098 * 21 19 18 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 27 27 H 1.08992 * 109.46818 * 59.99948 * 13 12 2 28 28 H 1.08995 * 109.47231 * 179.97438 * 13 12 2 29 29 H 1.09001 * 109.46905 * 300.00154 * 13 12 2 30 30 H 1.09005 * 109.46652 * 309.99590 * 14 12 2 31 31 H 1.09001 * 109.47189 * 69.99202 * 14 12 2 32 32 H 1.09001 * 110.97078 * 334.63992 * 17 15 14 33 33 H 1.09009 * 110.96681 * 98.36751 * 17 15 14 34 34 H 1.08994 * 110.24625 * 144.42073 * 18 17 15 35 35 H 1.09003 * 110.24891 * 266.32877 * 18 17 15 36 36 H 1.09008 * 109.47006 * 90.00037 * 20 19 18 37 37 H 1.08999 * 109.47589 * 209.99776 * 20 19 18 38 38 H 1.08994 * 109.47395 * 330.00431 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8625 -0.9043 -3.6342 16 1 2.9162 -1.1832 -3.6395 17 6 1.4901 -0.1711 -4.9436 18 6 0.9618 -1.3320 -5.8153 19 7 0.4906 -2.3495 -4.8684 20 6 -0.4041 -3.4548 -5.2202 21 6 0.9856 -2.1370 -3.6368 22 8 0.7621 -2.8326 -2.6688 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.7095 1.1617 3.4844 27 1 3.8029 -1.3531 -0.3068 28 1 3.8208 -1.3117 -2.0859 29 1 3.9186 0.2051 -1.1592 30 1 0.4721 0.1324 -2.3563 31 1 2.0518 0.9346 -2.5280 32 1 0.7109 0.5704 -4.7675 33 1 2.3685 0.2889 -5.3965 34 1 0.1381 -0.9890 -6.4412 35 1 1.7636 -1.7338 -6.4348 36 1 0.1872 -4.3155 -5.5331 37 1 -1.0072 -3.7242 -4.3532 38 1 -1.0580 -3.1474 -6.0362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709561539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:06 Heat of formation + Delta-G solvation = -41.766647 kcal Electronic energy + Delta-G solvation = -18135.561664 eV Core-core repulsion = 15398.529268 eV Total energy + Delta-G solvation = -2737.032396 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38210 -38.63237 -37.23543 -35.15679 -33.64697 -31.15696 -29.62511 -27.83637 -27.34696 -26.08444 -24.25465 -22.28346 -21.36594 -19.97600 -18.40494 -17.79070 -17.29038 -16.91737 -16.15795 -15.83230 -15.60206 -15.13728 -14.66388 -14.52965 -14.17663 -14.01140 -13.54829 -13.33678 -13.23235 -13.06637 -12.95517 -12.81475 -12.68253 -12.34788 -12.28172 -12.08499 -11.98438 -11.75409 -11.42275 -10.87104 -10.52770 -10.48640 -9.56008 -8.76223 -8.11460 -6.22258 1.39059 1.41139 1.52397 1.76892 2.23522 2.42118 3.15682 3.28040 3.63472 3.69078 3.98789 4.23848 4.34102 4.43950 4.51349 4.56726 4.63107 4.70267 4.75638 4.78833 4.85052 4.89320 4.98311 5.01847 5.07560 5.13067 5.25514 5.30816 5.48159 5.72796 5.75257 5.79772 6.23880 6.27117 6.46012 6.81496 6.92708 7.42106 7.46275 8.94845 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038963 B = 0.006009 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.450651 B = 4658.922193 C = 4803.461787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.219 3.781 3 H -0.033 1.033 4 C -0.518 4.518 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.275 1.275 12 N -0.542 5.542 13 C 0.044 3.956 14 C 0.071 3.929 15 C -0.116 4.116 16 H 0.111 0.889 17 C -0.119 4.119 18 C 0.105 3.895 19 N -0.636 5.636 20 C 0.094 3.906 21 C 0.505 3.495 22 O -0.556 6.556 23 H 0.061 0.939 24 H 0.028 0.972 25 H 0.016 0.984 26 H 0.262 0.738 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -1.663 -20.261 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.112 3.888 3 H -0.016 1.016 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.266 5.266 13 C -0.104 4.104 14 C -0.058 4.058 15 C -0.138 4.138 16 H 0.129 0.871 17 C -0.157 4.157 18 C -0.016 4.016 19 N -0.372 5.372 20 C -0.047 4.047 21 C 0.293 3.707 22 O -0.432 6.432 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.429 -2.469 -19.636 19.796 hybrid contribution 0.372 0.354 1.314 1.411 sum 0.801 -2.115 -18.323 18.462 Atomic orbital electron populations 1.21607 0.97916 0.98332 0.99416 1.18991 0.92195 0.90133 0.87446 1.01555 1.21428 1.30937 1.12012 0.91216 0.92885 1.25718 0.95424 0.95860 1.01861 1.70015 1.37845 1.24235 1.24011 0.85518 0.78242 0.78794 0.78840 1.19644 1.20613 1.19983 1.61975 1.10068 1.52660 1.01897 1.22165 0.87964 0.98870 1.01404 1.21958 1.00044 0.94542 0.89251 1.22048 1.00820 0.94279 0.96676 0.87115 1.22729 1.03728 0.97174 0.92044 1.22308 1.00948 0.86972 0.91414 1.48442 1.48748 1.29855 1.10117 1.21600 0.93188 0.88559 1.01358 1.21270 0.80593 0.86520 0.82352 1.90752 1.61647 1.52657 1.38163 0.92013 0.95350 0.96453 0.92909 0.93087 0.90989 0.96887 0.92326 0.94058 0.89679 0.86164 0.87945 0.89087 0.92145 0.93420 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.24 8.76 71.98 0.63 -5.61 16 2 C 0.22 12.11 2.06 44.17 0.09 12.20 16 3 H -0.03 -1.96 8.14 -2.39 -0.02 -1.98 16 4 C -0.52 -30.81 7.93 25.60 0.20 -30.61 16 5 H 0.05 3.20 6.39 -2.91 -0.02 3.18 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -55.47 11.32 21.45 0.24 -55.23 16 8 Si 0.96 46.34 29.54 68.60 2.03 48.36 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 12 N -0.54 -25.47 3.97 -901.47 -3.58 -29.05 16 13 C 0.04 1.85 9.06 127.69 1.16 3.00 16 14 C 0.07 2.62 4.06 86.30 0.35 2.97 16 15 C -0.12 -3.30 2.90 -10.80 -0.03 -3.34 16 16 H 0.11 2.98 6.24 -2.39 -0.01 2.97 16 17 C -0.12 -1.95 6.70 31.65 0.21 -1.74 16 18 C 0.11 1.48 7.35 86.83 0.64 2.12 16 19 N -0.64 -15.34 3.33 -842.92 -2.81 -18.15 16 20 C 0.09 1.88 10.96 127.77 1.40 3.28 16 21 C 0.50 17.43 7.43 87.90 0.65 18.08 16 22 O -0.56 -26.03 16.87 -3.02 -0.05 -26.08 16 23 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 24 H 0.03 1.35 6.20 -2.39 -0.01 1.33 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 27 H 0.05 2.34 6.23 -2.39 -0.01 2.33 16 28 H 0.07 2.49 6.19 -2.39 -0.01 2.48 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 2.33 5.81 -2.38 -0.01 2.32 16 31 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 32 H 0.08 1.39 7.91 -2.39 -0.02 1.38 16 33 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.05 1.20 7.93 -2.39 -0.02 1.18 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -77.10 299.41 2.61 -74.48 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.03 Total: 4.29 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.75 Total: 1.37 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -6.15 Total: -102.43 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -77.10 2.61 -74.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709561539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.718 kcal (2) G-P(sol) polarization free energy of solvation -77.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds