Wall clock time and date at job start Mon Mar 30 2020 03:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.46925 * 2 1 4 4 C 1.46497 * 120.00639 * 82.48569 * 3 2 1 5 5 C 1.50703 * 109.47004 * 269.99705 * 4 3 2 6 6 H 1.07995 * 119.99685 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00130 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00263 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00163 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46776 * 270.00120 * 9 7 5 11 11 H 1.48504 * 109.46640 * 29.99770 * 9 7 5 12 12 H 1.48494 * 109.47027 * 149.99884 * 9 7 5 13 13 C 1.34777 * 119.99699 * 262.47876 * 3 2 1 14 14 O 1.21283 * 119.99937 * 174.39254 * 13 3 2 15 15 C 1.50700 * 120.00217 * 354.38764 * 13 3 2 16 16 H 1.08995 * 112.95665 * 338.30504 * 15 13 3 17 17 N 1.47964 * 113.76371 * 206.50582 * 15 13 3 18 18 C 1.47958 * 90.76294 * 220.99726 * 17 15 13 19 19 C 1.53936 * 86.18323 * 24.69000 * 18 17 15 20 20 C 1.53005 * 113.73234 * 221.92330 * 19 18 17 21 21 C 1.52994 * 113.73325 * 90.64173 * 19 18 17 22 22 H 1.08996 * 109.46981 * 183.65339 * 1 2 3 23 23 H 1.09006 * 109.46983 * 303.65068 * 1 2 3 24 24 H 1.09000 * 109.46890 * 63.64539 * 1 2 3 25 25 H 1.08993 * 109.47003 * 239.99816 * 2 1 3 26 26 H 1.09005 * 109.46496 * 119.99615 * 2 1 3 27 27 H 1.08997 * 109.47689 * 149.99658 * 4 3 2 28 28 H 1.08999 * 109.47062 * 29.98979 * 4 3 2 29 29 H 0.97004 * 119.99401 * 0.02562 * 8 7 5 30 30 H 1.00899 * 110.99406 * 333.88704 * 17 15 13 31 31 H 1.09007 * 113.75880 * 270.36838 * 18 17 15 32 32 H 1.09002 * 113.76229 * 139.00772 * 18 17 15 33 33 H 1.08993 * 109.47124 * 158.53552 * 20 19 18 34 34 H 1.09000 * 109.46900 * 278.53618 * 20 19 18 35 35 H 1.08999 * 109.47132 * 38.53603 * 20 19 18 36 36 H 1.08999 * 109.46979 * 323.27005 * 21 19 18 37 37 H 1.08993 * 109.47440 * 83.27173 * 21 19 18 38 38 H 1.09004 * 109.47102 * 203.27263 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1061 2.1272 1.2577 5 6 0.8081 2.8526 1.5031 6 1 -0.0010 2.7667 0.7930 7 6 0.6536 3.6257 2.6342 8 7 1.6387 3.7298 3.4992 9 14 -0.9551 4.5254 2.9380 10 1 -0.8900 5.8764 2.3250 11 1 -2.0729 3.7595 2.3304 12 1 -1.1810 4.6554 4.3999 13 6 2.3870 1.9655 -1.1572 14 8 2.6941 3.1387 -1.1732 15 6 2.4176 1.1612 -2.4312 16 1 2.4960 0.0885 -2.2550 17 7 3.3738 1.6740 -3.4372 18 6 2.3981 1.4241 -4.5211 19 6 1.3149 1.5460 -3.4341 20 6 0.2014 0.5037 -3.5549 21 6 0.7845 2.9692 -3.2503 22 1 -0.3633 -1.0255 0.0655 23 1 -0.3633 0.5695 0.8555 24 1 -0.3633 0.4562 -0.9209 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.9199 2.8496 1.1957 28 1 2.2962 1.4352 2.0781 29 1 2.4742 3.2629 3.3412 30 1 3.5322 2.6629 -3.3143 31 1 2.4722 0.4280 -4.9576 32 1 2.3605 2.2158 -5.2693 33 1 -0.2972 0.3914 -2.5922 34 1 -0.5217 0.8294 -4.3027 35 1 0.6297 -0.4524 -3.8559 36 1 1.6007 3.6804 -3.3774 37 1 0.0111 3.1675 -3.9923 38 1 0.3639 3.0739 -2.2502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710041999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:59 Heat of formation + Delta-G solvation = -7.900533 kcal Electronic energy + Delta-G solvation = -18623.374715 eV Core-core repulsion = 15887.810864 eV Total energy + Delta-G solvation = -2735.563851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.85388 -37.99268 -35.43019 -32.99828 -31.56898 -29.97697 -28.06473 -27.39721 -25.80023 -23.79704 -22.82150 -22.66174 -19.53875 -18.02332 -17.02513 -16.92795 -15.78211 -15.23204 -14.45491 -14.21374 -13.83870 -13.71040 -13.63628 -13.41836 -12.95897 -12.50756 -12.35153 -12.03417 -11.94537 -11.79895 -11.64114 -11.36848 -11.31580 -10.94547 -10.78308 -10.65357 -10.43598 -10.30434 -10.13515 -9.11280 -8.96122 -8.43512 -8.38148 -7.66054 -6.37760 -4.09362 3.11016 3.41941 3.45471 3.59928 3.78407 4.19815 4.40813 4.52703 4.71203 4.95771 5.11898 5.28897 5.36328 5.37539 5.47386 5.54002 5.64404 5.72873 5.81334 5.84701 5.95851 5.96331 5.96814 6.05585 6.13938 6.21031 6.41056 6.46232 6.78650 6.85072 7.10406 7.35673 7.40625 8.03994 8.26747 8.43435 8.77340 8.96449 9.59703 10.99172 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028566 B = 0.007569 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.962647 B = 3698.433307 C = 3707.848185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 N -0.588 5.588 4 C 0.236 3.764 5 C -0.598 4.598 6 H 0.053 0.947 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 1.071 2.929 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.511 3.489 14 O -0.537 6.537 15 C 0.023 3.977 16 H 0.119 0.881 17 N -0.639 5.639 18 C 0.022 3.978 19 C -0.110 4.110 20 C -0.146 4.146 21 C -0.132 4.132 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.021 0.979 29 H 0.267 0.733 30 H 0.350 0.650 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -8.744 -13.126 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 N -0.319 5.319 4 C 0.117 3.883 5 C -0.637 4.637 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.547 5.547 9 Si 0.900 3.100 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.297 3.703 14 O -0.414 6.414 15 C -0.091 4.091 16 H 0.137 0.863 17 N -0.270 5.270 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.203 4.203 21 C -0.190 4.190 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.543 -7.670 -12.103 14.553 hybrid contribution -0.061 -0.443 -0.910 1.014 sum -2.604 -8.114 -13.013 15.555 Atomic orbital electron populations 1.22346 0.95972 1.01136 1.03737 1.21471 0.94969 0.83492 1.01588 1.48032 1.62179 1.13279 1.08437 1.19339 0.98440 0.91267 0.79291 1.22234 0.99713 1.32343 1.09412 0.92870 1.25773 1.03951 0.96111 0.92744 1.70771 1.04896 1.42106 1.36957 0.83506 0.74226 0.76124 0.76156 1.21438 1.21557 1.20946 1.20105 0.78083 0.87552 0.84569 1.90658 1.49495 1.15846 1.85424 1.23583 0.93170 1.00713 0.91588 0.86312 1.65271 1.35985 1.23754 1.02005 1.23781 0.90214 1.02357 0.94407 1.23352 0.95483 0.97503 0.94781 1.21930 0.98002 0.97749 1.02652 1.21658 1.01164 0.93350 1.02792 0.92827 0.90103 0.92769 0.91446 0.91212 0.95137 0.96129 0.92221 0.83179 0.88580 0.90836 0.91424 0.92321 0.92309 0.91814 0.92416 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.03 37.16 0.37 -2.36 16 2 C 0.11 1.78 6.17 -4.04 -0.02 1.75 16 3 N -0.59 -12.44 2.47 -175.06 -0.43 -12.87 16 4 C 0.24 6.11 4.46 -5.19 -0.02 6.09 16 5 C -0.60 -16.76 8.34 -34.44 -0.29 -17.05 16 6 H 0.05 1.50 7.38 -52.49 -0.39 1.11 16 7 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 8 N -0.91 -27.76 13.65 55.43 0.76 -27.00 16 9 Si 1.07 25.62 29.90 -169.99 -5.08 20.53 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.51 10.63 6.07 -10.99 -0.07 10.56 16 14 O -0.54 -13.24 14.29 5.55 0.08 -13.16 16 15 C 0.02 0.36 3.64 -67.80 -0.25 0.11 16 16 H 0.12 1.68 5.80 -51.93 -0.30 1.38 16 17 N -0.64 -9.76 8.48 -110.92 -0.94 -10.70 16 18 C 0.02 0.27 7.99 -2.77 -0.02 0.25 16 19 C -0.11 -1.48 1.35 -153.57 -0.21 -1.69 16 20 C -0.15 -1.63 9.20 37.16 0.34 -1.29 16 21 C -0.13 -2.04 7.76 37.15 0.29 -1.75 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.55 6.79 -51.93 -0.35 1.20 16 24 H 0.05 0.83 5.40 -51.93 -0.28 0.55 16 25 H 0.07 0.90 5.43 -51.93 -0.28 0.62 16 26 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 27 H 0.03 0.89 7.37 -51.93 -0.38 0.50 16 28 H 0.02 0.54 7.83 -51.93 -0.41 0.13 16 29 H 0.27 8.12 7.22 -40.82 -0.29 7.82 16 30 H 0.35 5.83 7.03 -39.29 -0.28 5.56 16 31 H 0.10 0.99 7.98 -51.93 -0.41 0.57 16 32 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.07 0.82 5.40 -51.93 -0.28 0.54 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.56 7.98 -51.93 -0.41 0.15 16 36 H 0.06 1.04 6.97 -51.93 -0.36 0.68 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.32 7.37 -51.93 -0.38 0.93 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -32.09 297.08 -6.83 -38.92 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.72 Total: 4.74 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 0.03 Total: -4.94 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.62 Total: -50.58 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.09 -6.83 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710041999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.022 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds