Wall clock time and date at job start Mon Mar 30 2020 03:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.46925 * 2 1 4 4 C 1.46497 * 120.00639 * 82.48569 * 3 2 1 5 5 C 1.50703 * 109.47004 * 269.99705 * 4 3 2 6 6 H 1.07995 * 119.99685 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00130 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00263 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00163 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46776 * 270.00120 * 9 7 5 11 11 H 1.48504 * 109.46640 * 29.99770 * 9 7 5 12 12 H 1.48494 * 109.47027 * 149.99884 * 9 7 5 13 13 C 1.34777 * 119.99699 * 262.47876 * 3 2 1 14 14 O 1.21283 * 119.99937 * 174.39254 * 13 3 2 15 15 C 1.50700 * 120.00217 * 354.38764 * 13 3 2 16 16 H 1.08995 * 112.95665 * 338.30504 * 15 13 3 17 17 N 1.47964 * 113.76371 * 206.50582 * 15 13 3 18 18 C 1.47958 * 90.76294 * 220.99726 * 17 15 13 19 19 C 1.53936 * 86.18323 * 24.69000 * 18 17 15 20 20 C 1.53005 * 113.73234 * 221.92330 * 19 18 17 21 21 C 1.52994 * 113.73325 * 90.64173 * 19 18 17 22 22 H 1.08996 * 109.46981 * 183.65339 * 1 2 3 23 23 H 1.09006 * 109.46983 * 303.65068 * 1 2 3 24 24 H 1.09000 * 109.46890 * 63.64539 * 1 2 3 25 25 H 1.08993 * 109.47003 * 239.99816 * 2 1 3 26 26 H 1.09005 * 109.46496 * 119.99615 * 2 1 3 27 27 H 1.08997 * 109.47689 * 149.99658 * 4 3 2 28 28 H 1.08999 * 109.47062 * 29.98979 * 4 3 2 29 29 H 0.97004 * 119.99401 * 0.02562 * 8 7 5 30 30 H 1.00899 * 110.99406 * 333.88704 * 17 15 13 31 31 H 1.09007 * 113.75880 * 270.36838 * 18 17 15 32 32 H 1.09002 * 113.76229 * 139.00772 * 18 17 15 33 33 H 1.08993 * 109.47124 * 158.53552 * 20 19 18 34 34 H 1.09000 * 109.46900 * 278.53618 * 20 19 18 35 35 H 1.08999 * 109.47132 * 38.53603 * 20 19 18 36 36 H 1.08999 * 109.46979 * 323.27005 * 21 19 18 37 37 H 1.08993 * 109.47440 * 83.27173 * 21 19 18 38 38 H 1.09004 * 109.47102 * 203.27263 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1061 2.1272 1.2577 5 6 0.8081 2.8526 1.5031 6 1 -0.0010 2.7667 0.7930 7 6 0.6536 3.6257 2.6342 8 7 1.6387 3.7298 3.4992 9 14 -0.9551 4.5254 2.9380 10 1 -0.8900 5.8764 2.3250 11 1 -2.0729 3.7595 2.3304 12 1 -1.1810 4.6554 4.3999 13 6 2.3870 1.9655 -1.1572 14 8 2.6941 3.1387 -1.1732 15 6 2.4176 1.1612 -2.4312 16 1 2.4960 0.0885 -2.2550 17 7 3.3738 1.6740 -3.4372 18 6 2.3981 1.4241 -4.5211 19 6 1.3149 1.5460 -3.4341 20 6 0.2014 0.5037 -3.5549 21 6 0.7845 2.9692 -3.2503 22 1 -0.3633 -1.0255 0.0655 23 1 -0.3633 0.5695 0.8555 24 1 -0.3633 0.4562 -0.9209 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.9199 2.8496 1.1957 28 1 2.2962 1.4352 2.0781 29 1 2.4742 3.2629 3.3412 30 1 3.5322 2.6629 -3.3143 31 1 2.4722 0.4280 -4.9576 32 1 2.3605 2.2158 -5.2693 33 1 -0.2972 0.3914 -2.5922 34 1 -0.5217 0.8294 -4.3027 35 1 0.6297 -0.4524 -3.8559 36 1 1.6007 3.6804 -3.3774 37 1 0.0111 3.1675 -3.9923 38 1 0.3639 3.0739 -2.2502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710041999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:59 Heat of formation + Delta-G solvation = -31.870629 kcal Electronic energy + Delta-G solvation = -18624.414136 eV Core-core repulsion = 15887.810864 eV Total energy + Delta-G solvation = -2736.603272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15402 -39.51755 -37.13981 -35.12594 -32.64752 -31.51760 -29.75720 -28.48132 -27.44705 -25.11735 -24.46206 -24.21478 -20.94890 -19.29421 -19.12725 -18.44152 -17.32583 -16.63737 -15.89036 -15.66999 -15.51702 -15.25609 -14.91624 -14.63153 -14.28838 -14.09944 -13.81100 -13.59501 -13.41564 -13.29473 -13.04721 -13.01060 -12.57857 -12.43537 -12.29301 -12.04441 -11.97839 -11.79876 -11.42752 -11.16787 -10.62219 -10.57466 -9.60665 -9.49331 -8.68030 -6.42485 1.45717 1.55091 1.57387 1.72494 2.19120 2.51667 3.05093 3.09812 3.23305 3.50112 3.68259 4.04211 4.08444 4.28137 4.33060 4.40946 4.56108 4.62456 4.68021 4.69829 4.76537 4.83754 4.87028 4.92902 4.97509 4.99873 5.03776 5.10337 5.18668 5.33648 5.56539 5.61765 5.82462 6.11395 6.15298 6.45522 6.64696 7.25760 7.38947 8.66415 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028566 B = 0.007569 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.962647 B = 3698.433307 C = 3707.848185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.248 3.752 5 C -0.598 4.598 6 H 0.047 0.953 7 C -0.035 4.035 8 N -0.935 5.935 9 Si 1.117 2.883 10 H -0.283 1.283 11 H -0.266 1.266 12 H -0.276 1.276 13 C 0.502 3.498 14 O -0.588 6.588 15 C 0.026 3.974 16 H 0.145 0.855 17 N -0.651 5.651 18 C 0.036 3.964 19 C -0.105 4.105 20 C -0.142 4.142 21 C -0.128 4.128 22 H 0.093 0.907 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.074 0.926 27 H -0.013 1.013 28 H 0.016 0.984 29 H 0.254 0.746 30 H 0.338 0.662 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -10.888 -15.486 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.326 5.326 4 C 0.126 3.874 5 C -0.637 4.637 6 H 0.066 0.934 7 C -0.233 4.233 8 N -0.573 5.573 9 Si 0.938 3.062 10 H -0.209 1.209 11 H -0.191 1.191 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.469 6.469 15 C -0.087 4.087 16 H 0.162 0.838 17 N -0.281 5.281 18 C -0.093 4.093 19 C -0.107 4.107 20 C -0.199 4.199 21 C -0.185 4.185 22 H 0.112 0.888 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.092 0.908 27 H 0.005 0.995 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.091 -9.879 -14.492 18.010 hybrid contribution 0.473 0.209 -0.226 0.564 sum -3.618 -9.670 -14.718 17.978 Atomic orbital electron populations 1.22268 0.95212 1.02932 1.02039 1.21833 0.95583 0.80909 1.03771 1.48100 1.62522 1.14940 1.07003 1.18854 0.96076 0.90727 0.81706 1.22455 1.00139 1.32085 1.08979 0.93426 1.27280 1.06451 0.96782 0.92744 1.70899 1.05096 1.43279 1.37994 0.82947 0.71181 0.75416 0.76655 1.20919 1.19066 1.20151 1.21103 0.76511 0.87451 0.85870 1.90623 1.51490 1.18417 1.86359 1.23696 0.95210 1.00804 0.88992 0.83773 1.65353 1.36866 1.22843 1.03025 1.23938 0.87440 1.04501 0.93463 1.23325 0.96290 0.96759 0.94310 1.21931 0.97314 0.97991 1.02677 1.21587 1.01135 0.94809 1.00990 0.88844 0.94224 0.92390 0.87462 0.90774 0.99459 0.96604 0.93660 0.84559 0.85554 0.89458 0.92524 0.90741 0.89627 0.93712 0.89711 0.95434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.92 10.03 71.98 0.72 -4.19 16 2 C 0.10 3.13 6.17 86.38 0.53 3.66 16 3 N -0.60 -25.60 2.47 -826.17 -2.04 -27.64 16 4 C 0.25 13.49 4.46 85.63 0.38 13.87 16 5 C -0.60 -34.70 8.34 25.60 0.21 -34.49 16 6 H 0.05 2.76 7.38 -2.91 -0.02 2.74 16 7 C -0.03 -2.06 5.46 84.65 0.46 -1.59 16 8 N -0.94 -58.97 13.65 21.45 0.29 -58.68 16 9 Si 1.12 52.02 29.90 68.60 2.05 54.07 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.50 21.23 6.07 87.66 0.53 21.77 16 14 O -0.59 -30.52 14.29 -3.04 -0.04 -30.56 16 15 C 0.03 0.77 3.64 44.27 0.16 0.93 16 16 H 0.15 3.50 5.80 -2.39 -0.01 3.49 16 17 N -0.65 -18.69 8.48 -504.83 -4.28 -22.97 16 18 C 0.04 0.72 7.99 86.41 0.69 1.41 16 19 C -0.11 -2.55 1.35 -51.53 -0.07 -2.62 16 20 C -0.14 -2.53 9.20 71.98 0.66 -1.87 16 21 C -0.13 -3.85 7.76 71.98 0.56 -3.30 16 22 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.49 6.79 -2.38 -0.02 1.48 16 24 H 0.06 1.66 5.40 -2.39 -0.01 1.65 16 25 H 0.11 2.47 5.43 -2.39 -0.01 2.46 16 26 H 0.07 2.23 8.00 -2.38 -0.02 2.21 16 27 H -0.01 -0.79 7.37 -2.39 -0.02 -0.80 16 28 H 0.02 0.87 7.83 -2.39 -0.02 0.85 16 29 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 30 H 0.34 11.25 7.03 -89.69 -0.63 10.62 16 31 H 0.13 1.86 7.98 -2.38 -0.02 1.84 16 32 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 33 H 0.06 1.16 5.40 -2.39 -0.01 1.15 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.11 7.98 -2.39 -0.02 1.09 16 36 H 0.04 1.48 6.97 -2.39 -0.02 1.47 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.03 1.04 7.37 -2.38 -0.02 1.02 16 Total: -1.00 -74.65 297.08 1.35 -73.30 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.53 Total: 18.91 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.85 Total: -6.43 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -6.03 Total: -109.29 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.04 Total: -30.56 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal Total: -74.65 1.35 -73.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710041999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.432 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds