Wall clock time and date at job start Mon Mar 30 2020 03:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46915 * 2 1 4 4 C 1.50695 * 109.47438 * 120.00328 * 2 1 3 5 5 H 1.08001 * 119.99867 * 120.00091 * 4 2 1 6 6 C 1.37882 * 119.99979 * 300.00011 * 4 2 1 7 7 N 1.31516 * 119.99721 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99795 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47065 * 90.00198 * 8 6 4 10 10 H 1.48502 * 109.46616 * 210.00036 * 8 6 4 11 11 H 1.48501 * 109.47317 * 329.99581 * 8 6 4 12 12 N 1.46504 * 109.47153 * 240.00836 * 2 1 3 13 13 C 1.34770 * 120.00094 * 84.99696 * 12 2 1 14 14 O 1.21281 * 120.00244 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99761 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47152 * 59.99841 * 15 13 12 17 17 C 1.53005 * 109.47304 * 179.97438 * 15 13 12 18 18 C 1.52997 * 109.47452 * 180.02562 * 17 15 13 19 19 C 1.53002 * 109.46817 * 300.00239 * 18 17 15 20 20 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 21 21 N 1.46901 * 109.46860 * 179.97438 * 19 18 17 22 22 C 1.53000 * 109.47233 * 60.00194 * 19 18 17 23 23 C 1.52997 * 109.47060 * 299.99657 * 22 19 18 24 24 H 1.08995 * 109.47147 * 59.99692 * 1 2 3 25 25 H 1.08992 * 109.46638 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46734 * 299.99758 * 1 2 3 27 27 H 0.96997 * 119.99443 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99455 * 264.99876 * 12 2 1 29 29 H 1.09002 * 109.46935 * 59.99966 * 17 15 13 30 30 H 1.09001 * 109.46812 * 300.00308 * 17 15 13 31 31 H 1.08993 * 109.47194 * 179.97438 * 18 17 15 32 32 H 1.09002 * 109.46695 * 59.99734 * 18 17 15 33 33 H 1.00908 * 110.99847 * 60.00104 * 21 19 18 34 34 H 1.00898 * 110.99877 * 183.95284 * 21 19 18 35 35 H 1.09002 * 109.47398 * 59.99826 * 22 19 18 36 36 H 1.09001 * 109.47194 * 180.02562 * 22 19 18 37 37 H 1.08996 * 109.47853 * 180.02562 * 23 22 19 38 38 H 1.09002 * 109.47153 * 300.00319 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8598 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8027 0.8724 2.6999 10 1 0.9760 1.9948 3.9069 11 1 0.8470 2.1764 1.4921 12 7 2.0184 -0.6904 -1.1963 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4116 15 6 2.6489 -0.7284 -3.5878 16 1 1.9760 -1.5503 -3.8327 17 6 2.6998 0.2546 -4.7592 18 6 3.2087 -0.4668 -6.0087 19 6 4.6112 -1.0177 -5.7439 20 1 5.2842 -0.1960 -5.4994 21 7 5.0996 -1.7109 -6.9435 22 6 4.5602 -2.0009 -4.5727 23 6 4.0514 -1.2795 -3.3231 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9034 -0.5282 4.4374 28 1 2.2491 -1.6317 -1.1528 29 1 3.3725 1.0767 -4.5145 30 1 1.7005 0.6468 -4.9480 31 1 3.2445 0.2335 -6.8432 32 1 2.5356 -1.2886 -6.2531 33 1 5.1423 -1.0826 -7.7319 34 1 5.9972 -2.1392 -6.7734 35 1 3.8872 -2.8227 -4.8171 36 1 5.5596 -2.3930 -4.3837 37 1 4.0155 -1.9796 -2.4885 38 1 4.7244 -0.4576 -3.0786 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710981062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:08 Heat of formation + Delta-G solvation = -61.384036 kcal Electronic energy + Delta-G solvation = -17710.075322 eV Core-core repulsion = 14972.192252 eV Total energy + Delta-G solvation = -2737.883070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79408 -37.84989 -35.00646 -33.62218 -32.34507 -30.85099 -29.95640 -28.12090 -25.17838 -22.99399 -22.70968 -20.86934 -19.80206 -19.38242 -17.30993 -16.06042 -15.71898 -15.44113 -15.31816 -15.22526 -14.42671 -13.92161 -13.75866 -13.29696 -12.90472 -12.66559 -12.25016 -12.19039 -12.05600 -11.71107 -11.63949 -11.20717 -11.17460 -11.06806 -10.79925 -10.49533 -10.18242 -10.07875 -9.67903 -9.21361 -8.98605 -8.90202 -8.74238 -8.10744 -6.20191 -4.22364 3.23768 3.29143 3.35970 3.41010 3.96997 4.28064 4.32735 4.61356 4.70485 5.06670 5.14666 5.16281 5.20551 5.35507 5.40274 5.48653 5.52816 5.77590 5.91807 5.96065 6.00229 6.15870 6.17472 6.31327 6.33136 6.40843 6.44204 6.58544 6.88074 6.94910 7.21198 7.22147 7.33174 7.54944 8.18098 8.56882 8.77445 8.99627 9.41306 10.92066 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047172 B = 0.005304 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.434398 B = 5277.318122 C = 5657.070009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.235 3.765 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.701 5.701 13 C 0.506 3.494 14 O -0.558 6.558 15 C -0.107 4.107 16 H 0.093 0.907 17 C -0.096 4.096 18 C -0.110 4.110 19 C 0.088 3.912 20 H 0.035 0.965 21 N -0.850 5.850 22 C -0.109 4.109 23 C -0.110 4.110 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.267 0.733 28 H 0.394 0.606 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.339 0.661 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.874 -1.915 -17.367 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.291 3.709 14 O -0.438 6.438 15 C -0.128 4.128 16 H 0.111 0.889 17 C -0.135 4.135 18 C -0.148 4.148 19 C -0.023 4.023 20 H 0.053 0.947 21 N -0.379 5.379 22 C -0.147 4.147 23 C -0.148 4.148 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.228 0.772 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.018 -1.534 -17.086 17.418 hybrid contribution 0.294 0.923 0.407 1.051 sum 3.312 -0.611 -16.678 17.015 Atomic orbital electron populations 1.22443 0.99401 1.00790 0.99234 1.19089 0.90091 0.94675 0.83002 0.93490 1.21051 1.33177 1.14368 0.88575 0.90235 1.24835 0.95498 0.96696 0.95533 1.69872 1.45015 1.40118 0.98032 0.86868 0.80541 0.83635 0.77384 1.20322 1.22187 1.18703 1.46208 1.65065 1.13791 1.09851 1.20520 0.78150 0.87402 0.84810 1.90635 1.51563 1.16267 1.85299 1.21352 0.98080 0.99244 0.94162 0.88915 1.21295 1.02344 0.97312 0.92526 1.21560 0.95813 0.99910 0.97534 1.21401 0.96068 0.94723 0.90129 0.94694 1.58749 1.34030 1.38307 1.06810 1.21538 1.01473 0.98152 0.93560 1.21506 0.95012 1.00454 0.97844 0.94602 0.92857 0.93528 0.92319 0.77216 0.91359 0.91069 0.92187 0.91157 0.84898 0.84837 0.90923 0.91997 0.90717 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.96 37.16 0.33 -3.31 16 2 C 0.24 5.68 2.15 -69.08 -0.15 5.53 16 3 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 4 C -0.53 -14.51 9.31 -34.44 -0.32 -14.83 16 5 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 8 Si 0.89 21.98 24.37 -169.99 -4.14 17.84 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 12 N -0.70 -14.00 4.96 -54.93 -0.27 -14.27 16 13 C 0.51 9.55 7.12 -10.99 -0.08 9.47 16 14 O -0.56 -12.66 15.65 5.56 0.09 -12.57 16 15 C -0.11 -1.47 2.52 -91.77 -0.23 -1.70 16 16 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.10 -1.25 4.49 -26.73 -0.12 -1.37 16 18 C -0.11 -1.15 5.50 -26.73 -0.15 -1.29 16 19 C 0.09 0.86 3.25 -67.71 -0.22 0.64 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 21 N -0.85 -7.08 9.25 -4.67 -0.04 -7.12 16 22 C -0.11 -1.11 5.46 -26.73 -0.15 -1.25 16 23 C -0.11 -1.34 5.10 -26.73 -0.14 -1.47 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.39 6.94 7.96 -40.82 -0.32 6.62 16 29 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.07 0.98 8.10 -51.93 -0.42 0.55 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.34 2.37 9.04 -39.29 -0.36 2.01 16 34 H 0.34 2.39 8.99 -39.29 -0.35 2.03 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.90 7.57 -51.93 -0.39 0.51 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 297.24 15.07 4.48 4.48 Total: -1.00 -31.35 297.24 -6.62 -37.97 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.19 Total: 6.96 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.31 Total: -7.49 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.46 Total: -47.17 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.35 -6.62 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710981062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.418 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds